메뉴 건너뛰기




Volumn 7, Issue 1, 2012, Pages 70-81

Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov

Author keywords

Genome; Paenibacillus senegalensis

Indexed keywords

ADOLESCENT; ARTICLE; BACTERIUM ISOLATION; GENE SEQUENCE; HUMAN; MALE; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PAENIBACILLUS SENEGALENSIS;

EID: 84868284273     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.3056450     Document Type: Article
Times cited : (67)

References (30)
  • 1
    • 84946721396 scopus 로고    scopus 로고
    • Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov
    • PubMed
    • Lagier JC, Karkouri EK, Nguyen TT, Armougom F, Raoult D, Fournier PE. Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov. Stand Ge-nomic Sci 2012; 6:116-125. PubMed http://dx.doi.org/10.4056/sigs.2415480
    • (2012) Stand Ge-nomic Sci , vol.6 , pp. 116-125
    • Lagier, J.C.1    Karkouri, E.K.2    Nguyen, T.T.3    Armougom, F.4    Raoult, D.5    Fournier, P.E.6
  • 2
    • 76849088617 scopus 로고    scopus 로고
    • Notes on the characterization of pro-karyote strains for taxonomic purposes
    • PubMed
    • Tindall BJ, Rosselló-Móra R, Busse HJ, Ludwig W, Kämpfer P. Notes on the characterization of pro-karyote strains for taxonomic purposes. Int J Syst Evol Microbiol 2010; 60:249-266. PubMed http://dx.doi.org/10.1099/ijs.0.016949-0
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 249-266
    • Tindall, B.J.1    Rosselló-Móra, R.2    Busse, H.J.3    Ludwig, W.4    Kämpfer, P.5
  • 3
    • 33947302827 scopus 로고    scopus 로고
    • Taxonomic parameters revisited: Tarnished gold standards
    • Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol To-day 2006; 33:152-155.
    • (2006) Microbiol To-day , vol.33 , pp. 152-155
    • Stackebrandt, E.1    Ebers, J.2
  • 4
    • 79951682259 scopus 로고    scopus 로고
    • Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbi-ology
    • Pub-Med
    • Welker M, Moore ER. Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbi-ology. Syst Appl Microbiol 2011; 34:2-11. Pub-Med http://dx.doi.org/10.1016/j.syapm.2010.11.013
    • (2011) Syst Appl Microbiol , vol.34 , pp. 2-11
    • Welker, M.1    Moore, E.R.2
  • 5
    • 0027860384 scopus 로고
    • Molecular identifi-cation of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus
    • PubMed
    • Ash C, Priest FG, Collins MD. Molecular identifi-cation of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 1993; 64:253-260. PubMed http://dx.doi.org/10.1007/BF00873085
    • (1993) Paenibacillus. Antonie van Leeuwenhoek , vol.64 , pp. 253-260
    • Ash, C.1    Priest, F.G.2    Collins, M.D.3
  • 6
    • 69549133598 scopus 로고    scopus 로고
    • Ecology and biotechnologi-cal potential of Paenibacillus polymyxa: A minireview
    • Lal S, Tabacchioni S. Ecology and biotechnologi-cal potential of Paenibacillus polymyxa: a minireview. Indian J Microbiol 2009; 49:2-10. http://dx.doi.org/10.1007/s12088-009-0008-y
    • (2009) Indian J Microbiol , vol.49 , pp. 2-10
    • Lal, S.1    Tabacchioni, S.2
  • 7
    • 7544247062 scopus 로고    scopus 로고
    • Ecology of Bacillus and Paenibacillus spp. in Agricultural Systems
    • PubMed
    • McSpadden Gardener BB. Ecology of Bacillus and Paenibacillus spp. in Agricultural Systems. Phytopathology 2004; 94:1252-1258. PubMed http://dx.doi.org/10.1094/PHYTO.2004.94.11.1252
    • (2004) Phytopathology , vol.94 , pp. 1252-1258
    • McSpadden Gardener, B.B.1
  • 8
    • 5544228332 scopus 로고    scopus 로고
    • Paenibacillus antarcticus sp. nov., a novel psychrotolerant organism from the Antarctic envi-ronment
    • PubMed
    • Montes MJ, Mercade E, Bozal N, Guinea J. Paenibacillus antarcticus sp. nov., a novel psychrotolerant organism from the Antarctic envi-ronment. Int J Syst Evol Microbiol 2004; 54:1521-1526. PubMed http://dx.doi.org/10.1099/ijs.0.63078-0
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1521-1526
    • Montes, M.J.1    Mercade, E.2    Bozal, N.3    Guinea, J.4
  • 10
    • 0141594729 scopus 로고    scopus 로고
    • 2-(2'-Hydroxyphenyl) benzene sulfinate desulfinase from the thermophilic desulfurizing bacterium Paenibacillus sp. strain A11-2: Purification and characterization
    • PubMed
    • Konishi J, Maruhashi K. 2-(2'-Hydroxyphenyl) benzene sulfinate desulfinase from the thermophilic desulfurizing bacterium Paenibacillus sp. strain A11-2: purification and characterization. Appl Microbiol Biotechnol 2003; 62:356-361. PubMed http://dx.doi.org/10.1007/s00253-003-1331-6
    • (2003) Appl Microbiol Biotechnol , vol.62 , pp. 356-361
    • Konishi, J.1    Maruhashi, K.2
  • 12
    • 0031726425 scopus 로고    scopus 로고
    • Cooperative organization of bacterial colonies: From genotype to morphotype
    • PubMed
    • Ben-Jacob E, Cohen I, Gutnick DL. Cooperative organization of bacterial colonies: from genotype to morphotype. Annu Rev Microbiol 1998; 52:779-806. PubMed http://dx.doi.org/10.1146/annurev.micro.52.1.779
    • (1998) Annu Rev Microbiol , vol.52 , pp. 779-806
    • Ben-Jacob, E.1    Cohen, I.2    Gutnick, D.L.3
  • 13
    • 33745004743 scopus 로고    scopus 로고
    • Bacterial Signal Transduction Modules: From Genomics to Biolo-gy
    • Galperin MY, Gomelsky M. Bacterial Signal Transduction Modules: from Genomics to Biolo-gy. ASM News 2005; 71:326-333.
    • (2005) ASM News , vol.71 , pp. 326-333
    • Galperin, M.Y.1    Gomelsky, M.2
  • 14
    • 81855195364 scopus 로고    scopus 로고
    • Malaria morbidity and pyrethroid resistance after the introduction of in-secticide-treated bednets and artemisinin-based combination therapies: A longitudinal study
    • PubMed
    • Trape JF, Tall A, Diagne N, Ndiath O, Ly AB, Faye J, Dieye-Ba F, Roucher C, Bouganali C, Badiane A, et al. Malaria morbidity and pyrethroid resistance after the introduction of in-secticide-treated bednets and artemisinin-based combination therapies: a longitudinal study. Lan-cet Infect Dis 2011; 11:925-932. PubMed http://dx.doi.org/10.1016/S1473-3099(11)70194-3
    • (2011) Lan-cet Infect Dis , vol.11 , pp. 925-932
    • Trape, J.F.1    Tall, A.2    Diagne, N.3    Ndiath, O.4    Ly, A.B.5    Faye, J.6    Dieye-Ba, F.7    Roucher, C.8    Bouganali, C.9    Badiane, A.10
  • 15
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the do-mains Archae, Bacteria, and Eukarya
    • PubMed
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the do-mains Archae, Bacteria, and Eukarya. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed http://dx.doi.org/10.1073/pnas.87.12.4576
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 16
    • 0018839477 scopus 로고
    • Approved list of bac-terial names
    • Skerman VBD, Sneath PHA. Approved list of bac-terial names. Int J Syst Bact 1980; 30:225-420. http://dx.doi.org/10.1099/00207713-30-1-225
    • (1980) Int J Syst Bact , vol.30 , pp. 225-420
    • Skerman, V.B.D.1    Sneath, P.H.A.2
  • 17
    • 0000685441 scopus 로고    scopus 로고
    • Taxonomic outline of the Archae and Bacteria
    • In: Garrity GM, Boone DR, Castenholz RW (eds), Springer-Verlag, New York
    • Garrity GM, Holt J. Taxonomic outline of the Archae and Bacteria. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of System-atic Bacteriology. Springer-Verlag, New York, 2001, p.155-166.
    • (2001) Bergey's Manual of System-atic Bacteriology , pp. 155-166
    • Garrity, G.M.1    Holt, J.2
  • 18
    • 84865212442 scopus 로고
    • In: Hauduroy P, Ehringer G, Guillot G, Magrou J, Prevot AR, Rosset, Urbain A (eds). Paris, Masson
    • Prevot AR. Dictionnaire des bactéries pathogens. In: Hauduroy P, Ehringer G, Guillot G, Magrou J, Prevot AR, Rosset, Urbain A (eds). Paris, Masson, 1953, p.1-692.
    • (1953) Dictionnaire des bactéries pathogens , pp. 1-692
    • Prevot, A.R.1
  • 21
    • 67651108596 scopus 로고    scopus 로고
    • Ongoing revo-lution in bacteriology: Routine identification of bacteria by matrix-assisted laser desorption ioni-zation time-of-flight mass spectrometry
    • PubMed
    • Seng P, Drancourt M, Gouriet F, La Scola B, Fournier PE, Rolain JM, Raoult D. Ongoing revo-lution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ioni-zation time-of-flight mass spectrometry. Clin In-fect Dis 2009; 49:543-551. PubMed http://dx.doi.org/10.1086/600885
    • (2009) Clin In-fect Dis , vol.49 , pp. 543-551
    • Seng, P.1    Drancourt, M.2    Gouriet, F.3    la Scola, B.4    Fournier, P.E.5    Rolain, J.M.6    Raoult, D.7
  • 22
    • 84879010009 scopus 로고    scopus 로고
    • Prodigal
    • Prodigal. http://prodigal.ornl.gov
  • 24
    • 0030854739 scopus 로고    scopus 로고
    • t-RNAscan-SE: A program for imroved detection of transfer RNA gene in ge-nomic sequence
    • PubMed
    • Lowe TM, Eddy SR. t-RNAscan-SE: a program for imroved detection of transfer RNA gene in ge-nomic sequence. Nucleic Acids Res 1997; 25:955-964. PubMed
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 26
    • 3042521098 scopus 로고    scopus 로고
    • Improved prediction of signal peptides: SignalP 3.0
    • PubMed
    • Bendtsen JD, Nielsen H, von Heijne G, Brunak S. Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 2004; 340:783-795. PubMed http://dx.doi.org/10.1016/j.jmb.2004.05.028
    • (2004) J Mol Biol , vol.340 , pp. 783-795
    • Bendtsen, J.D.1    Nielsen, H.2    von Heijne, G.3    Brunak, S.4
  • 27
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • PubMed
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001; 305:567-580. PubMed http://dx.doi.org/10.1006/jmbi.2000.4315
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.4
  • 29
    • 58049208278 scopus 로고    scopus 로고
    • DNAPlotter: Circular and linear interac-tive genome visualization
    • PubMed
    • Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J. DNAPlotter: circular and linear interac-tive genome visualization. Bioinformatics 2009; 25:119-120. PubMed http://dx.doi.org/10.1093/bioinformatics/btn578
    • (2009) Bioinformatics , vol.25 , pp. 119-120
    • Carver, T.1    Thomson, N.2    Bleasby, A.3    Berriman, M.4    Parkhill, J.5
  • 30
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    • PubMed
    • Darling AC, Mau B, Blattner FR, Perna NT. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 2004; 14:1394-1403. PubMed http://dx.doi.org/10.1101/gr.2289704
    • (2004) Genome Res , vol.14 , pp. 1394-1403
    • Darling, A.C.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.