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Volumn 13, Issue 1, 2012, Pages

PAnalyzer: A software tool for protein inference in shotgun proteomics

Author keywords

[No Author keywords available]

Indexed keywords

DATA DEPENDENT; FREE SOFTWARE TOOLS; INFERENCE PROCESS; INPUT FILES; MANUAL INTERVENTION; MULTI-PLATFORM; OUTPUT FORMATS; PEPTIDE IDENTIFICATION; PROTEIN IDENTIFICATION; REAL SAMPLES; SHOTGUN PROTEOMICS; SPECIALIZED SOFTWARE;

EID: 84868261119     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-13-288     Document Type: Article
Times cited : (26)

References (12)
  • 1
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • 10.1038/85686, 11231557
    • Washburn M, Wolters D, Yates III J. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 2001, 19(3):242-247. 10.1038/85686, 11231557.
    • (2001) Nat Biotechnol , vol.19 , Issue.3 , pp. 242-247
    • Washburn, M.1    Wolters, D.2    Yates III, J.3
  • 2
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • 10.1038/nature01511, 12634793
    • Aebersold R, Mann M. Mass spectrometry-based proteomics. Nature 2003, 422(6928):198-207. 10.1038/nature01511, 12634793.
    • (2003) Nature , vol.422 , Issue.6928 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 3
    • 27644555055 scopus 로고    scopus 로고
    • Interpretation of shotgun proteomic data
    • 10.1074/mcp.R500012-MCP200, 16009968
    • Nesvizhskii A, Aebersold R. Interpretation of shotgun proteomic data. Mol Cell Proteomics 2005, 4(10):1419-1440. 10.1074/mcp.R500012-MCP200, 16009968.
    • (2005) Mol Cell Proteomics , vol.4 , Issue.10 , pp. 1419-1440
    • Nesvizhskii, A.1    Aebersold, R.2
  • 5
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • 10.1021/ac0341261, 14632076
    • Nesvizhskii A, Keller A, Kolker E, Aebersold R. A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 2003, 75(17):4646-4658. 10.1021/ac0341261, 14632076.
    • (2003) Anal Chem , vol.75 , Issue.17 , pp. 4646-4658
    • Nesvizhskii, A.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 6
    • 79959930601 scopus 로고    scopus 로고
    • IsoformResolver: A peptide-centric algorithm for protein inference
    • 10.1021/pr200039p, 3167374, 21599010
    • Meyer-Arendt K, Old W, Houel S, Renganathan K, Eichelberger B, Resing K, Ahn N. IsoformResolver: A peptide-centric algorithm for protein inference. J Proteome Res 2011, 10(7):3060-3075. 10.1021/pr200039p, 3167374, 21599010.
    • (2011) J Proteome Res , vol.10 , Issue.7 , pp. 3060-3075
    • Meyer-Arendt, K.1    Old, W.2    Houel, S.3    Renganathan, K.4    Eichelberger, B.5    Resing, K.6    Ahn, N.7
  • 7
    • 70149084269 scopus 로고    scopus 로고
    • Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function
    • 10.1101/gr.089060.108, 2765272, 19546170
    • Grobei M, Qeli E, Brunner E, Rehrauer H, Zhang R, Roschitzki B, Basler K, Ahrens C, Grossniklaus U. Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function. Genome Res 2009, 19(10):1786-1800. 10.1101/gr.089060.108, 2765272, 19546170.
    • (2009) Genome Res , vol.19 , Issue.10 , pp. 1786-1800
    • Grobei, M.1    Qeli, E.2    Brunner, E.3    Rehrauer, H.4    Zhang, R.5    Roschitzki, B.6    Basler, K.7    Ahrens, C.8    Grossniklaus, U.9
  • 8
    • 77954502710 scopus 로고    scopus 로고
    • PeptideClassifier for protein inference and targeted quantitative proteomics
    • 10.1038/nbt0710-647, 20622826
    • Qeli E, Ahrens C. PeptideClassifier for protein inference and targeted quantitative proteomics. Nat Biotechnol 2010, 28(7):647-650. 10.1038/nbt0710-647, 20622826.
    • (2010) Nat Biotechnol , vol.28 , Issue.7 , pp. 647-650
    • Qeli, E.1    Ahrens, C.2
  • 9
    • 31644446949 scopus 로고    scopus 로고
    • Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition
    • Silva J, Gorenstein M, Li G, Vissers J, Geromanos S. Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition. Mol Cell Proteomics 2006, 5(1):144-156.
    • (2006) Mol Cell Proteomics , vol.5 , Issue.1 , pp. 144-156
    • Silva, J.1    Gorenstein, M.2    Li, G.3    Vissers, J.4    Geromanos, S.5
  • 11
    • 63049084861 scopus 로고    scopus 로고
    • The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS
    • 10.1002/pmic.200800562, 19294628
    • Geromanos S, Vissers J, Silva J, Dorschel C, Li G, Gorenstein M, Bateman R, Langridge J. The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS. Proteomics 2009, 9(6):1683-1695. 10.1002/pmic.200800562, 19294628.
    • (2009) Proteomics , vol.9 , Issue.6 , pp. 1683-1695
    • Geromanos, S.1    Vissers, J.2    Silva, J.3    Dorschel, C.4    Li, G.5    Gorenstein, M.6    Bateman, R.7    Langridge, J.8
  • 12
    • 63049138916 scopus 로고    scopus 로고
    • Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures
    • 10.1002/pmic.200800564, 19294629
    • Li G, Vissers J, Silva J, Golick D, Gorenstein M, Geromanos S. Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures. Proteomics 2009, 9(6):1696-1719. 10.1002/pmic.200800564, 19294629.
    • (2009) Proteomics , vol.9 , Issue.6 , pp. 1696-1719
    • Li, G.1    Vissers, J.2    Silva, J.3    Golick, D.4    Gorenstein, M.5    Geromanos, S.6


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