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Volumn 30, Issue 6, 2012, Pages 1470-1479

Evaluation of Genetic Diversity of Chilli Landraces from North Eastern India Based on Morphology, SSR Markers and the Pun1 Locus

Author keywords

AT3; Chilli; Genetic diversity; North eastern India; Single nucleotide polymorphism

Indexed keywords

CAPSICUM;

EID: 84868154874     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-012-0466-y     Document Type: Article
Times cited : (42)

References (51)
  • 1
    • 32644436583 scopus 로고    scopus 로고
    • Genetic diversity of Capsicum using random amplified polymorphic DNAs
    • Adetula O (2006) Genetic diversity of Capsicum using random amplified polymorphic DNAs. Afr J Biotech 5: 120-122.
    • (2006) Afr J Biotech , vol.5 , pp. 120-122
    • Adetula, O.1
  • 2
    • 70349487698 scopus 로고    scopus 로고
    • Genetic diversity in some Turkish pepper (Capsicum annuum L.) genotypes revealed by AFLP analyses
    • Aktas H, Abak K, Sensoy S (2009) Genetic diversity in some Turkish pepper (Capsicum annuum L.) genotypes revealed by AFLP analyses. Afr J Biotech 8: 4378-4386.
    • (2009) Afr J Biotech , vol.8 , pp. 4378-4386
    • Aktas, H.1    Abak, K.2    Sensoy, S.3
  • 3
    • 0037898122 scopus 로고    scopus 로고
    • Differential expression of fatty acid synthase genes, Acl, Fat and Kas, in Capsicum fruit
    • Aluru MR, Mazourek M, Landry LG, Curry J, Jahn M, O'Connell MA (2003) Differential expression of fatty acid synthase genes, Acl, Fat and Kas, in Capsicum fruit. J Exp Botany 54: 1655-1664.
    • (2003) J Exp Botany , vol.54 , pp. 1655-1664
    • Aluru, M.R.1    Mazourek, M.2    Landry, L.G.3    Curry, J.4    Jahn, M.5    O'Connell, M.A.6
  • 4
    • 33646798948 scopus 로고    scopus 로고
    • Diversity of horticultural crops in north eastern region
    • Asati BS, Yadav DS (2004) Diversity of horticultural crops in north eastern region. ENVIS Bull Himal Ecol 12: 1-11.
    • (2004) ENVIS Bull Himal Ecol , vol.12 , pp. 1-11
    • Asati, B.S.1    Yadav, D.S.2
  • 6
    • 58249121420 scopus 로고    scopus 로고
    • Capsicum: historical and botanical perspectives
    • A. K. De (Ed.), London: Taylor & Francis
    • Basu SK, De AK (2003) Capsicum: historical and botanical perspectives. In: De AK (ed) The genus Capsicum. Taylor & Francis, London, pp 1-15.
    • (2003) The Genus Capsicum , pp. 1-15
    • Basu, S.K.1    De, A.K.2
  • 7
    • 67651115915 scopus 로고    scopus 로고
    • Genetic variability and traditional practices in Naga king chilli landraces of Nagaland
    • Bhagowati RR, Changkija S (2009) Genetic variability and traditional practices in Naga king chilli landraces of Nagaland. Asian Agri-Hist 13: 171-180.
    • (2009) Asian Agri-Hist , vol.13 , pp. 171-180
    • Bhagowati, R.R.1    Changkija, S.2
  • 8
    • 84868100853 scopus 로고    scopus 로고
    • Kerala: Spice Board Cochin
    • Board S (2004) Spice Statistics. Spice Board Cochin, Kerala, p 281.
    • (2004) Spice Statistics , pp. 281
    • Board, S.1
  • 9
    • 33644676657 scopus 로고    scopus 로고
    • Intra- and interspecific genetic diversity exploration in chilli (Capsicum spp.) using morphological and randomly applied polymorphic DNA markers
    • Borgohain R, Devi J, Samar N (2005) Intra- and interspecific genetic diversity exploration in chilli (Capsicum spp.) using morphological and randomly applied polymorphic DNA markers. Indian J Agri Sci 75: 582-585.
    • (2005) Indian J Agri Sci , vol.75 , pp. 582-585
    • Borgohain, R.1    Devi, J.2    Samar, N.3
  • 10
    • 34047241596 scopus 로고    scopus 로고
    • Bhut Jolokia'-the world's hottest known chile pepper is a putative naturally occurring interspecific hybrid
    • Bosland PW, Baral JB (2007) 'Bhut Jolokia'-the world's hottest known chile pepper is a putative naturally occurring interspecific hybrid. Hort Sci 42: 222-224.
    • (2007) Hort Sci , vol.42 , pp. 222-224
    • Bosland, P.W.1    Baral, J.B.2
  • 11
    • 0019302053 scopus 로고
    • Construction of a genetic linkage map in man using restriction fragment length polymorphisms
    • Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314-333.
    • (1980) Am J Hum Genet , vol.32 , pp. 314-333
    • Botstein, D.1    White, R.L.2    Skolnick, M.3    Davis, R.W.4
  • 12
    • 0000156374 scopus 로고
    • Phylogenetic analysis: models and estimation procedures
    • Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution 21: 550-570.
    • (1967) Evolution , vol.21 , pp. 550-570
    • Cavalli-Sforza, L.L.1    Edwards, A.W.F.2
  • 13
    • 77957787289 scopus 로고    scopus 로고
    • Solanaceous vegetables
    • Kalyani Publishers, Ludhiana, India
    • Dhaliwal MS (2007) Solanaceous vegetables. In: Handbook of vegetable crops. Kalyani Publishers, Ludhiana, India.
    • (2007) Handbook of vegetable crops
    • Dhaliwal, M.S.1
  • 14
    • 26844488140 scopus 로고    scopus 로고
    • Genetic variability in pepper (Capsicum annuum L.) estimated by morphological data and amplified fragment length polymorphism markers
    • Geleta LF, Labuschagne MT, Viljoen CD (2005) Genetic variability in pepper (Capsicum annuum L.) estimated by morphological data and amplified fragment length polymorphism markers. Biodivers Conserv 14: 2361-2375.
    • (2005) Biodivers Conserv , vol.14 , pp. 2361-2375
    • Geleta, L.F.1    Labuschagne, M.T.2    Viljoen, C.D.3
  • 15
    • 79957818963 scopus 로고    scopus 로고
    • Variability, heritability and genetic advance in chilli (Capsicum spp.)
    • Gogoi D, Gautam BP (2002) Variability, heritability and genetic advance in chilli (Capsicum spp.). Agric Sci Dig 22: 102-104.
    • (2002) Agric Sci Dig , vol.22 , pp. 102-104
    • Gogoi, D.1    Gautam, B.P.2
  • 16
    • 34047193006 scopus 로고    scopus 로고
    • Guinness Book of World Records
    • Guinness Book of World Records (2006) Hottest spice. http://www. guinnessworldrecords. com.
    • (2006) Hottest spice
  • 17
    • 12344323650 scopus 로고    scopus 로고
    • AFLP assessment of genetic diversity of Capsicum genetic resources in Guatemala: home gardens as an option for conservation
    • Guzman FA, Ayala H, Azurdia C, Duque MC, de Vicen MC (2005) AFLP assessment of genetic diversity of Capsicum genetic resources in Guatemala: home gardens as an option for conservation. Crop Sci 45: 363-370.
    • (2005) Crop Sci , vol.45 , pp. 363-370
    • Guzman, F.A.1    Ayala, H.2    Azurdia, C.3    Duque, M.C.4    de Vicen, M.C.5
  • 18
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 20
    • 0242725262 scopus 로고
    • RAPD variation within and among populations of outcrossing buffalograss (Buchloe dactyloides (Nutt.) Engelm)
    • Huff DR, Peakall R, Smouse PE (1993) RAPD variation within and among populations of outcrossing buffalograss (Buchloe dactyloides (Nutt.) Engelm). Theor Appl Genet 86: 927-934.
    • (1993) Theor Appl Genet , vol.86 , pp. 927-934
    • Huff, D.R.1    Peakall, R.2    Smouse, P.E.3
  • 21
    • 60649102230 scopus 로고    scopus 로고
    • Development and utilization of diagnostic DAMD-PCR markers for Capsicum accessions
    • Ince AG, Karaca M, Onus AN (2009) Development and utilization of diagnostic DAMD-PCR markers for Capsicum accessions. Genet Resour Crop Evol 56: 211-221.
    • (2009) Genet Resour Crop Evol , vol.56 , pp. 211-221
    • Ince, A.G.1    Karaca, M.2    Onus, A.N.3
  • 22
    • 79956110397 scopus 로고    scopus 로고
    • CAPS-microsatellites: use of CAPS method to convert non-polymorphic microsatellites into useful markers
    • Ince AG, Karaca M, Onus AN (2010a) CAPS-microsatellites: use of CAPS method to convert non-polymorphic microsatellites into useful markers. Mol Breed 25: 491-499.
    • (2010) Mol Breed , vol.25 , pp. 491-499
    • Ince, A.G.1    Karaca, M.2    Onus, A.N.3
  • 23
    • 77952877244 scopus 로고    scopus 로고
    • Polymorphic microsatellite markers transferable across Capsicum species
    • Ince AG, Karaca M, Onus AN (2010b) Polymorphic microsatellite markers transferable across Capsicum species. Plant Mol Bio Rep 28: 285-291.
    • (2010) Plant Mol Bio Rep , vol.28 , pp. 285-291
    • Ince, A.G.1    Karaca, M.2    Onus, A.N.3
  • 24
    • 84879411884 scopus 로고    scopus 로고
    • Indian Horticulture Database, New Delhi: Aristo Printing Press
    • Indian Horticulture Database (2011) National Horticulture Board. Aristo Printing Press, New Delhi, pp 6-7.
    • (2011) National Horticulture Board , pp. 6-7
  • 26
    • 77955174748 scopus 로고    scopus 로고
    • Discovery of single nucleotide polymorphism in Capsicum and SNP markers for cultivar identification
    • Jung J, Park SW, Liu WY, Kang BC (2010) Discovery of single nucleotide polymorphism in Capsicum and SNP markers for cultivar identification. Euphytica 175: 91-107.
    • (2010) Euphytica , vol.175 , pp. 91-107
    • Jung, J.1    Park, S.W.2    Liu, W.Y.3    Kang, B.C.4
  • 27
    • 0035084948 scopus 로고    scopus 로고
    • An interspecific (Capsicum annuum × C. chinese) F2 linkage map in pepper using RFLP and AFLP markers
    • Kang BC, Nahm SH, Huh JH, Yoo HS, Yu JW (2001) An interspecific (Capsicum annuum × C. chinese) F2 linkage map in pepper using RFLP and AFLP markers. Theor Appl Genet 102: 531-539.
    • (2001) Theor Appl Genet , vol.102 , pp. 531-539
    • Kang, B.C.1    Nahm, S.H.2    Huh, J.H.3    Yoo, H.S.4    Yu, J.W.5
  • 28
    • 9644283046 scopus 로고    scopus 로고
    • Molecular AFLP analysis of the genotypes of pepper Capsicum annuum cultivars
    • Kochieva EZ, Ryzhova NN (2003) Molecular AFLP analysis of the genotypes of pepper Capsicum annuum cultivars. Russ J Genet 39: 1345-1348.
    • (2003) Russ J Genet , vol.39 , pp. 1345-1348
    • Kochieva, E.Z.1    Ryzhova, N.N.2
  • 29
    • 27244431800 scopus 로고    scopus 로고
    • Use of SSR markers to complement tests of distinctiveness, uniformity, and stability (DUS) of pepper (Capsicum annuum L.) varieties
    • Kwon YS, Lee JM, Yi GB, Yi SI, Kim KM, Soh EH, Bae KM, Park EK, Song IH, Kim BD (2005) Use of SSR markers to complement tests of distinctiveness, uniformity, and stability (DUS) of pepper (Capsicum annuum L.) varieties. Mol Cells 19: 428-435.
    • (2005) Mol Cells , vol.19 , pp. 428-435
    • Kwon, Y.S.1    Lee, J.M.2    Yi, G.B.3    Yi, S.I.4    Kim, K.M.5    Soh, E.H.6    Bae, K.M.7    Park, E.K.8    Song, I.H.9    Kim, B.D.10
  • 30
    • 33644977891 scopus 로고    scopus 로고
    • A gene encoding a putative acyl-transferase involved in pungency of Capsicum
    • Lang Y, Yanagawa S, Sasanuma T, Sasakuma T (2006) A gene encoding a putative acyl-transferase involved in pungency of Capsicum. Breed Sci 56: 55-62.
    • (2006) Breed Sci , vol.56 , pp. 55-62
    • Lang, Y.1    Yanagawa, S.2    Sasanuma, T.3    Sasakuma, T.4
  • 31
    • 1542349036 scopus 로고    scopus 로고
    • Characterization and molecular genetic mapping of microsatellite loci in pepper
    • Lee JM, Nahm SH, Kim YM, Kim BD (2004) Characterization and molecular genetic mapping of microsatellite loci in pepper. Theor Appl Genet 108: 619-627.
    • (2004) Theor Appl Genet , vol.108 , pp. 619-627
    • Lee, J.M.1    Nahm, S.H.2    Kim, Y.M.3    Kim, B.D.4
  • 32
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
    • (1967) Cancer Res , vol.27 , pp. 209-220
    • Mantel, N.1
  • 33
    • 33748449258 scopus 로고    scopus 로고
    • An SSR-based linkage map of Capsicum annuum
    • Minamiyama Y, Tsuro M, Hirai M (2006) An SSR-based linkage map of Capsicum annuum. Mol Breed 18: 157-169.
    • (2006) Mol Breed , vol.18 , pp. 157-169
    • Minamiyama, Y.1    Tsuro, M.2    Hirai, M.3
  • 34
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acid Res 8: 4321-4325.
    • (1980) Nucleic Acid Res , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 35
    • 0031913117 scopus 로고    scopus 로고
    • Variation in Capsicum annuum revealed by RAPD and AFLP markers
    • Paran I, Aftergoot E, Shifriss C (1998) Variation in Capsicum annuum revealed by RAPD and AFLP markers. Euphytica 99: 167-173.
    • (1998) Euphytica , vol.99 , pp. 167-173
    • Paran, I.1    Aftergoot, E.2    Shifriss, C.3
  • 36
    • 84868120875 scopus 로고    scopus 로고
    • Genetic relation in Capsicum annum [L.] cultivars through microsatellite markers: SSR and ISSR
    • Patel AS, Sasidharan N, Vala AG, Kumar V (2011) Genetic relation in Capsicum annum [L.] cultivars through microsatellite markers: SSR and ISSR. J Plant Breed 2: 67-76.
    • (2011) J Plant Breed , vol.2 , pp. 67-76
    • Patel, A.S.1    Sasidharan, N.2    Vala, A.G.3    Kumar, V.4
  • 37
    • 0002742914 scopus 로고
    • Numerical taxonomic studies on variation and domestication in some species of Capsicum
    • J. G. Hawkes, R. N. Lester, and A. D. Skelding (Eds.), London: Academic
    • Pickersgill B, Heiser CB, McNeill J (1979) Numerical taxonomic studies on variation and domestication in some species of Capsicum. In: Hawkes JG, Lester RN, Skelding AD (eds) The biology and taxonomy of Solanaceae. Linnean Society Symposium 7. Academic, London, pp 678-700.
    • (1979) The Biology and Taxonomy of Solanaceae. Linnean Society Symposium 7 , pp. 678-700
    • Pickersgill, B.1    Heiser, C.B.2    McNeill, J.3
  • 38
    • 33748607736 scopus 로고    scopus 로고
    • Characterization of capsaicin synthase and identification of its gene (csy1) for pungency factor capsaicin in pepper (Capsicum sp.)
    • Prasad BCN, Kumar V, Gururaj HB, Parimalan R, Giridhar P, Ravishankar GA (2006) Characterization of capsaicin synthase and identification of its gene (csy1) for pungency factor capsaicin in pepper (Capsicum sp.). PNAS 103: 13315-13320.
    • (2006) Pnas , vol.103 , pp. 13315-13320
    • Prasad, B.C.N.1    Kumar, V.2    Gururaj, H.B.3    Parimalan, R.4    Giridhar, P.5    Ravishankar, G.A.6
  • 39
    • 0036008761 scopus 로고    scopus 로고
    • Applications of single nucleotide polymorphisms in crop genetics
    • Rafalski A (2002) Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5: 94-100.
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 94-100
    • Rafalski, A.1
  • 40
    • 84868121001 scopus 로고    scopus 로고
    • Molecular markers for Capsicum frutescens varieties cultivated in Borneo
    • Rodrigues KF, Tam HK (2010) Molecular markers for Capsicum frutescens varieties cultivated in Borneo. J Plant Breed Crop Sci 2: 165-167.
    • (2010) J Plant Breed Crop Sci , vol.2 , pp. 165-167
    • Rodrigues, K.F.1    Tam, H.K.2
  • 41
    • 0029310655 scopus 로고
    • Use of RAPD analysis in devising conservation strategies for the rare and endangered Grevillea scapigera (Proteaceae)
    • Rossetto M, Weaver PK, Dixon KW (1995) Use of RAPD analysis in devising conservation strategies for the rare and endangered Grevillea scapigera (Proteaceae). Mol Ecol 4: 321-329.
    • (1995) Mol Ecol , vol.4 , pp. 321-329
    • Rossetto, M.1    Weaver, P.K.2    Dixon, K.W.3
  • 42
    • 77249126887 scopus 로고    scopus 로고
    • DNA profiling of Capsicum landraces of Manipur
    • Sanatombi K, Sen-Mandi S, Sharma GJ (2010) DNA profiling of Capsicum landraces of Manipur. Sci Hortic 124: 405-408.
    • (2010) Sci Hortic , vol.124 , pp. 405-408
    • Sanatombi, K.1    Sen-Mandi, S.2    Sharma, G.J.3
  • 43
    • 24044465859 scopus 로고    scopus 로고
    • Classification of pepper (Capsicum annum L.) accessions by RAPD analysis
    • Sitthiwong K, Matsui T, Sukprakarn S, Okuda N, Kosugi Y (2005) Classification of pepper (Capsicum annum L.) accessions by RAPD analysis. Biotechnology 4: 305-309.
    • (2005) Biotechnology , vol.4 , pp. 305-309
    • Sitthiwong, K.1    Matsui, T.2    Sukprakarn, S.3    Okuda, N.4    Kosugi, Y.5
  • 47
    • 0038041497 scopus 로고    scopus 로고
    • Molecular characterization by AFLPs of Capsicum germplasm from the Amazon Department in Colombia
    • Toquica SP, Rodriguez F, Martinez E, Duque MC, Tohme J (2003) Molecular characterization by AFLPs of Capsicum germplasm from the Amazon Department in Colombia. Genet Resour Crop Evol 50: 639-647.
    • (2003) Genet Resour Crop Evol , vol.50 , pp. 639-647
    • Toquica, S.P.1    Rodriguez, F.2    Martinez, E.3    Duque, M.C.4    Tohme, J.5
  • 48
    • 84861011907 scopus 로고    scopus 로고
    • Τhe role of a gibberellin 20-oxidase gene in fruit development in pepper (Capsicum annuum)
    • doi: 10. 1007/s11105-011-0364-8
    • Tsaballa A, Pasentsis K, Tsaftaris AS (2011a) Τhe role of a gibberellin 20-oxidase gene in fruit development in pepper (Capsicum annuum). Plant Mol Biol Rep. doi: 10. 1007/s11105-011-0364-8.
    • (2011) Plant Mol Biol Rep
    • Tsaballa, A.1    Pasentsis, K.2    Tsaftaris, A.S.3
  • 49
    • 79952519388 scopus 로고    scopus 로고
    • Multiple evidence for the role of an ovate-like gene in determining fruit shape in pepper
    • Tsaballa A, Pasentsis K, Darzentas N, Tsaftaris A (2011b) Multiple evidence for the role of an ovate-like gene in determining fruit shape in pepper. BMC Plant Biol 11: 46.
    • (2011) BMC Plant Biol , vol.11 , pp. 46
    • Tsaballa, A.1    Pasentsis, K.2    Darzentas, N.3    Tsaftaris, A.4
  • 50
    • 33751207081 scopus 로고    scopus 로고
    • Exploitation of pepper EST-SSRs and an SSR-based linkage map
    • Yi G, Lee JM, Lee S, Choi D, Kim BD (2006) Exploitation of pepper EST-SSRs and an SSR-based linkage map. Theor Appl Genet 114: 113-130.
    • (2006) Theor Appl Genet , vol.114 , pp. 113-130
    • Yi, G.1    Lee, J.M.2    Lee, S.3    Choi, D.4    Kim, B.D.5
  • 51
    • 77952876028 scopus 로고    scopus 로고
    • Functional domain marker (FDM): an in silico demonstration in Solanaceae using simple sequence repeats (SSRs)
    • Yu JK, Paik H, Choi JP, Han J-H, Choe JK, Hur CG (2010) Functional domain marker (FDM): an in silico demonstration in Solanaceae using simple sequence repeats (SSRs). Plant Mol Biol Rep 28: 352-356.
    • (2010) Plant Mol Biol Rep , vol.28 , pp. 352-356
    • Yu, J.K.1    Paik, H.2    Choi, J.P.3    Han, J.-H.4    Choe, J.K.5    Hur, C.G.6


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