[NiFe]-hydrogenase maturation: Isolation of a HypC-HypD complex carrying diatomic CO and CN- ligands

FEBS Letters

Volumn 586, Issue 21, 2012, Pages 3882-3887

  Soboh, Basem ^a   Stripp, Sven T ^b   Muhr, Enrico ^a   Granich, Claudia ^a   Braussemann, Mario ^a   Herzberg, Martin ^a   Heberle, Joachim ^b   Gary Sawers, R ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^b FREIE UNIVERSITÄT BERLIN   (Germany)

Author keywords

Carbon monoxide; Cyanide; Diatomic ligand; Hydrogenase; Infrared spectroscopy; Iron

Indexed keywords

CARBON DIOXIDE; CARBON MONOXIDE; COBALT; COPPER; CYANIDE; CYSTEINE; ESCHERICHIA COLI PROTEIN; HYPC MATURASE; HYPD MATURASE; IRON SULFUR PROTEIN; NICKEL; NICKEL IRON HYDROGENASE; OXYGEN; SULFIDE; UNCLASSIFIED DRUG; ZINC;

ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; DIATOM; ENZYME ACTIVE SITE; INFRARED SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN PURIFICATION;

AMINO ACIDS; BINDING SITES; CARBON MONOXIDE; CATIONS, DIVALENT; COENZYMES; CYANIDES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HYDROGENASE; IRON; LIGANDS; PLASMIDS; PROTEIN BINDING; PROTEINS; RECOMBINANT PROTEINS; SPECTROPHOTOMETRY, INFRARED;

ESCHERICHIA COLI;

EID: 84868150470     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2012.09.019     Document Type: Article

References (34)

1. P.M. Vignais, B. Billoud, and J. Meyer Classification and phylogeny of hydrogenases, FEMS Microbiol. Rev. 25 2001 455 501
2. 2 storage Ann. Rev. Biochem. 79 2010 507 536
3. A. Volbeda, M.H. Charon, C. Piras, E.C. Hatchikian, M. Frey, and J.C. Fontecilla-Camps Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas Nature 373 1995 580 587
4. 2 J. Biol. Chem. 274 1999 3331 3337
5. A. Böck, P.W. King, M. Blokesch, and M.C. Posewitz Maturation of hydrogenases Adv. Microbiol. Physiol. 51 2006 1 71
6. L. Forzi, and R.G. Sawers Maturation of [NiFe]-hydrogenases in Escherichia coli Biometals 20 2007 567 578
7. S. Reissmann, E. Hochleitner, H. Wang, A. Paschos, F. Lottspeich, R.S. Glass, and A. Böck Taming of a poison: biosynthesis of the NiFe-hydrogenase cyanide ligands Science 299 2003 1067 1070
8. A. Paschos, A. Bauer, A. Zimmermann, E. Zehelein, and A. Böck HypF, a carbamoyl phosphate-converting enzyme involved in [NiFe] hydrogenase maturation J. Biol. Chem. 277 2002 49945 49951
9. A. Jacobi, R. Rossmann, and A. Böck The hyp operon gene products are required for the maturation of catalytically active hydrogenase isoenzymes in Escherichia coli Arch. Microbiol. 158 1992 444 451
10. W. Roseboom, M. Blokesch, A. Böck, and S.P. Albracht The biosynthetic routes for carbon monoxide and cyanide in the Ni-Fe active site of hydrogenases are different FEBS Lett. 579 2005 469 472
11. L. Forzi, P. Hellwig, R.K. Thauer, and R.G. Sawers The CO and CN ligands to the Fe atom in [NiFe]-hydrogenase-2 of Escherichia coli have different metabolic origins FEBS Lett. 581 2007 3317 3321
12. -, but not of the intrinsic CO in the active site of the regulatory [NiFe]-hydrogenase from Ralstonia eutropha FEBS Lett. 581 2007 3322 3326
13. S. Petkun, R. Shi, Y. Li, A. Asinas, C. Munger, L. Zhang, M. Waclawek, B. Soboh, R.G. Sawers, and M. Cygler Structure of hydrogenase maturation protein HypF with reaction intermediates shows two active sites Structure 19 2011 1773 1783
14. Y. Shomura, and Y. Higuchi Structural basis for the reaction mechanism of S-carbamoylation of HypE by HypF in the maturation of [NiFe]-hydrogenases J. Biol. Chem. 287 2012 28409 28419
15. M. Blokesch, S.P.J. Albracht, B.F. Matzanke, N.M. Drapal, A. Jacobi, and A. Böck The complex between hydrogenase-maturation proteins HypC and HypD is an intermediate in the supply of cyanide to the active site iron of [NiFe]-hydrogenases J. Mol. Biol. 344 2004 155 167
16. S. Watanabe, R. Matsumi, T. Arai, H. Atomi, T. Imanaka, and K. Miki Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD and HypE: insights into cyanation reaction by thiol redox signaling Mol. Cell 27 2007 29 40
17. M. Blokesch, and A. Böck Properties of the [NiFe]-hydrogenase maturation protein HypD FEBS Lett. 580 2006 4065 4068
18. N. Drapal, and A. Böck Interaction of the hydrogenase accessory protein HypC with HycE, the large subunit of Escherichia coli hydrogenase 3 during enzyme maturation Biochemistry 37 1998 2941 2948
19. M. Ludwig, T. Schubert, I. Zebger, N. Wisitruansakul, M. Saggu, A. Strack, O. Lenz, P. Hildebrandt, and B. Friedrich Concerted action of two novel auxiliary proteins in assembly of the active site in a membrane-bound [NiFe]-hydrogenase J. Biol. Chem. 284 2009 2159 2168
20. M. Blokesch, and A. Böck Maturation of [NiFe]-hydrogenases in Escherichia coli: the HypC cycle J. Mol. Biol. 324 2002 287 296
21. M.J. Casadaban Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu J. Mol. Biol. 104 1976 541 555
22. F.W. Studier, and B.A. Moffatt Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes J. Mol. Biol. 189 1986 113 130
23. J. Sambrook, and D.W. Russell Molecular Cloning: A Laboratory Manual 2001 Cold Spring Harbor Laboratory Press Plainview, NY
24. Y.A. Begg, J.N. Whyte, and B.A. Haddock The identification of mutants of Escherichia coli deficient in formate dehydrogenase and nitrate reductase activities using dye indicator plates FEMS Microbiol. Lett. 2 1977 47 50
25. C. Pinske, S. Krüger, B. Soboh, C. Ihling, M. Kuhns, M. Braussemann, M. Jaroschinsky, C. Sauer, F. Sargent, A. Sinz, and R.G. Sawers Efficient electron transfer from hydrogen to benzyl viologen by the [NiFe]-hydrogenases of Escherichia coli is dependent on the coexpression of the Iron-sulfur cluster-containing small subunit Arch. Microbiol. 193 2011 893 903
26. U.K. Laemmli Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 1970 680 685
27. O.H. Lowry, N.J. Rosebrough, A.L. Farr, and R.J. Randall Protein measurement with the Folin phenol reagent J. Biol. Chem. 193 1951 265 275
28. B. Soboh, M. Kuhns, M. Braussemann, M. Waclawek, E. Muhr, A.J. Pierik, and R.G. Sawers Evidence for an oxygen-sensitive iron-sulfur cluster in an immature large subunit species of Escherichia coli [NiFe]-hydrogenase 2 Biochem. Biophys. Res. Commun. 424 2012 158 163
29. W.W. Fish Rapid colorimetric micromethod for the quantitation of complexed, iron in biological samples Methods Enzymol. 158 1988 357 364
30. J.D. Cline Spectrophotometric determination of hydrogen sulfide in natural waters Limnol. Oceanogr. 14 1969 454 458
31. T.M. van der Spek, A.F. Arendsen, R.P. Happe, S. Yun, K.A. Bagley, D.J. Stufkens, W.R. Hagen, and S.P. Albracht Similarities in the architecture of the active sites of Ni-hydrogenases and Fe-hydrogenases detected by means of infrared spectroscopy Eur. J. Biochem. 237 1996 629 634
32. M. Falk Infrared spectrum of carbon dioxide in aqueous solution Vib. Spectrosc. 4 1992 105 108
33. I. Czech, A. Silakov, W. Lubitz, and T. Happe The [FeFe]-hydrogenase maturase HydF from Clostridium acetobutylicum contains a CO and CN-ligated iron cofactor FEBS Lett. 584 2010 638 642
34. B. Soboh, S. Krüger, M. Kuhns, C. Pinske, A. Lehmann, and R.G. Sawers Development of a cell-free system reveals an oxygen-labile step in the maturation of [NiFe]-hydrogenase 2 of Escherichia coli FEBS Lett. 584 2010 4109 4114