-
1
-
-
0034610360
-
Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation
-
Mayor U, Johnson CM, Daggett V, Fersht AR (2000) Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation. Proc Natl Acad Sci USA 97(25):13518-13522.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.25
, pp. 13518-13522
-
-
Mayor, U.1
Johnson, C.M.2
Daggett, V.3
Fersht, A.R.4
-
2
-
-
0345255608
-
Unifying features in protein-folding mechanisms
-
Gianni S, et al. (2003) Unifying features in protein-folding mechanisms. Proc Natl Acad Sci USA 100(23):13286-13291.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.23
, pp. 13286-13291
-
-
Gianni, S.1
-
3
-
-
0142185492
-
The denatured state of Engrailed Homeodomain under denaturing and native conditions
-
Mayor U, Grossmann JG, Foster NW, Freund SM, Fersht AR (2003) The denatured state of Engrailed Homeodomain under denaturing and native conditions. J Mol Biol 333 (5):977-991.
-
(2003)
J Mol Biol
, vol.333
, Issue.5
, pp. 977-991
-
-
Mayor, U.1
Grossmann, J.G.2
Foster, N.W.3
Freund, S.M.4
Fersht, A.R.5
-
4
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
Mayor U, et al. (2003) The complete folding pathway of a protein from nanoseconds to microseconds. Nature 421(6925):863-867.
-
(2003)
Nature
, vol.421
, Issue.6925
, pp. 863-867
-
-
Mayor, U.1
-
5
-
-
27144532135
-
Solution structure of a protein denatured state and folding intermediate
-
Religa TL, Markson JS, Mayor U, Freund SM, Fersht AR (2005) Solution structure of a protein denatured state and folding intermediate. Nature 437(7061):1053-1056.
-
(2005)
Nature
, vol.437
, Issue.7061
, pp. 1053-1056
-
-
Religa, T.L.1
Markson, J.S.2
Mayor, U.3
Freund, S.M.4
Fersht, A.R.5
-
6
-
-
46849113841
-
Microscopic reversibility of protein folding in molecular dynamics simulations of the engrailed homeodomain
-
McCully ME, Beck DAC, Daggett V (2008) Microscopic reversibility of protein folding in molecular dynamics simulations of the engrailed homeodomain. Biochemistry 47 (27):7079-7089.
-
(2008)
Biochemistry
, vol.47
, Issue.27
, pp. 7079-7089
-
-
McCully, M.E.1
Beck, D.A.C.2
Daggett, V.3
-
7
-
-
77956567928
-
Refolding the engrailed homeodomain: Structural basis for the accumulation of a folding intermediate
-
McCully ME, Beck DAC, Fersht AR, Daggett V (2010) Refolding the engrailed homeodomain: Structural basis for the accumulation of a folding intermediate. Biophys J 99 (5):1628-1636.
-
(2010)
Biophys J
, vol.99
, Issue.5
, pp. 1628-1636
-
-
McCully, M.E.1
Beck, D.A.C.2
Fersht, A.R.3
Daggett, V.4
-
8
-
-
0014481598
-
Measurement of protein concentration by quantitative electron microscopy
-
Silverman L, Glick D (1969) Measurement of protein concentration by quantitative electron microscopy. J Cell Biol 40(3):773-778.
-
(1969)
J Cell Biol
, vol.40
, Issue.3
, pp. 773-778
-
-
Silverman, L.1
Glick, D.2
-
9
-
-
3843135179
-
Diffusing and colliding: The atomic level folding/unfolding pathway of a small helical protein
-
DeMarco ML, Alonso DOV, Daggett V (2004) Diffusing and colliding: The atomic level folding/unfolding pathway of a small helical protein. J Mol Biol 341(4):1109-1124.
-
(2004)
J Mol Biol
, vol.341
, Issue.4
, pp. 1109-1124
-
-
Demarco, M.L.1
Alonso, D.O.V.2
Daggett, V.3
-
10
-
-
0033516512
-
Analysis methods for comparison of multiple molecular dynamics trajectories: Applications to protein unfolding pathways and denatured ensembles
-
Kazmirski SL, Li A, Daggett V (1999) Analysis methods for comparison of multiple molecular dynamics trajectories: Applications to protein unfolding pathways and denatured ensembles. J Mol Biol 290(1):283-304.
-
(1999)
J Mol Biol
, vol.290
, Issue.1
, pp. 283-304
-
-
Kazmirski, S.L.1
Li, A.2
Daggett, V.3
-
11
-
-
77951685093
-
A comprehensive multidimensional-embedded, one-dimensional reaction coordinate for protein unfolding/folding
-
Toofanny RD, Jonsson AL, Daggett V (2010) A comprehensive multidimensional-embedded, one-dimensional reaction coordinate for protein unfolding/folding. Biophys J 98(11):2671-2681.
-
(2010)
Biophys J
, vol.98
, Issue.11
, pp. 2671-2681
-
-
Toofanny, R.D.1
Jonsson, A.L.2
Daggett, V.3
-
12
-
-
36549027538
-
A one-dimensional reaction coordinate for identification of transition states from explicit solvent P(fold)-like calculations
-
Beck DAC, Daggett V (2007) A one-dimensional reaction coordinate for identification of transition states from explicit solvent P(fold)-like calculations. Biophys J 93(10): 3382-3391.
-
(2007)
Biophys J
, vol.93
, Issue.10
, pp. 3382-3391
-
-
Beck, D.A.C.1
Daggett, V.2
-
13
-
-
0028143603
-
Characterization of the transition state of protein unfolding by use of molecular dynamics: Chymotrypsin inhibitor 2
-
Li A, Daggett V (1994) Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2. Proc Natl Acad Sci USA 91(22): 10430-10434.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, Issue.22
, pp. 10430-10434
-
-
Li, A.1
Daggett, V.2
-
14
-
-
0029981188
-
Structure of the transition state for folding of a protein derived from experiment and simulation
-
Daggett V, Li A, Itzhaki LS, Otzen DE, Fersht AR (1996) Structure of the transition state for folding of a protein derived from experiment and simulation. J Mol Biol 257(2): 430-440.
-
(1996)
J Mol Biol
, vol.257
, Issue.2
, pp. 430-440
-
-
Daggett, V.1
Li, A.2
Itzhaki, L.S.3
Otzen, D.E.4
Fersht, A.R.5
-
16
-
-
0029633167
-
Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution
-
Levitt M, Hirshberg M, Sharon R, Daggett V (1995) Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution. Comput Phys Commun 91:215-231.
-
(1995)
Comput Phys Commun
, vol.91
, pp. 215-231
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Daggett, V.4
-
17
-
-
0028032397
-
Structural studies of the engrailed homeodomain
-
Clarke ND, Kissinger CR, Desjarlais J, Gilliland GL, Pabo CO (1994) Structural studies of the engrailed homeodomain. Protein Sci 3(10):1779-1787.
-
(1994)
Protein Sci
, vol.3
, Issue.10
, pp. 1779-1787
-
-
Clarke, N.D.1
Kissinger, C.R.2
Desjarlais, J.3
Gilliland, G.L.4
Pabo, C.O.5
-
18
-
-
0036968512
-
Increasing temperature accelerates protein unfolding without changing the pathway of unfolding
-
Day R, Bennion BJ, Ham S, Daggett V (2002) Increasing temperature accelerates protein unfolding without changing the pathway of unfolding. J Mol Biol 322(1): 189-203.
-
(2002)
J Mol Biol
, vol.322
, Issue.1
, pp. 189-203
-
-
Day, R.1
Bennion, B.J.2
Ham, S.3
Daggett, V.4
-
19
-
-
0000125216
-
Calibration and testing of a water model for simulation of the molecular dynamics of proteins and nucleic acids in solution
-
Levitt M, Hirshberg M, Sharon R, Laidig KE, Daggett V (1997) Calibration and testing of a water model for simulation of the molecular dynamics of proteins and nucleic acids in solution. J Phys Chem B 101:5051-5061.
-
(1997)
J Phys Chem B
, vol.101
, pp. 5051-5061
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Laidig, K.E.4
Daggett, V.5
-
20
-
-
0009979659
-
Precise representation of volume properties of water at one atmosphere
-
Kell GS (1967) Precise representation of volume properties of water at one atmosphere. J Chem Eng Data 12:66-69.
-
(1967)
J Chem Eng Data
, vol.12
, pp. 66-69
-
-
Kell, G.S.1
-
22
-
-
12144275299
-
Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides
-
Beck DAC, Armen RS, Daggett V (2005) Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides. Biochemistry 44(2):609-616.
-
(2005)
Biochemistry
, vol.44
, Issue.2
, pp. 609-616
-
-
Beck, D.A.C.1
Armen, R.S.2
Daggett, V.3
-
23
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22(12):2577-2637.
-
(1983)
Biopolymers
, vol.22
, Issue.12
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
25
-
-
41149169500
-
Comparison of multiple crystal structures with NMR data for engrailed homeodomain
-
Religa TL (2008) Comparison of multiple crystal structures with NMR data for engrailed homeodomain. J Biomol NMR 40(3):189-202.
-
(2008)
J Biomol NMR
, vol.40
, Issue.3
, pp. 189-202
-
-
Religa, T.L.1
|