메뉴 건너뛰기




Volumn 6, Issue 9-10, 2012, Pages 443-446

A call for a fresh new look at the plasma proteome

Author keywords

Biomarkers; Plasma; Proteomics

Indexed keywords

GLYCOPEPTIDE; PROTEOME; TRYPSIN;

EID: 84868119565     PISSN: 18628346     EISSN: 18628354     Source Type: Journal    
DOI: 10.1002/prca.201200052     Document Type: Article
Times cited : (10)

References (33)
  • 1
    • 23944492134 scopus 로고    scopus 로고
    • Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly available database
    • Omenn, G. S., States, D. J., Adamski, M., Blackwell, T. W. et al., Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly available database. Proteomics 2005, 5, 3226-3245.
    • (2005) Proteomics , vol.5 , pp. 3226-3245
    • Omenn, G.S.1    States, D.J.2    Adamski, M.3    Blackwell, T.W.4
  • 2
    • 33644864034 scopus 로고    scopus 로고
    • Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study
    • States, D. J., Omenn, G. S., Blackwell, T. W., Fermin, D. et al., Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study. Nat. Biotechnol. 2006, 24, 333-338.
    • (2006) Nat. Biotechnol. , vol.24 , pp. 333-338
    • States, D.J.1    Omenn, G.S.2    Blackwell, T.W.3    Fermin, D.4
  • 4
    • 80053640240 scopus 로고    scopus 로고
    • Proteomic analysis of ovarian cancer proximal fluids: validation of elevated peroxiredoxin 1 in patient peripheral circulation
    • Hoskins, E. R., Hood, B. L., Sun, M., Krivak, T. C. et al., Proteomic analysis of ovarian cancer proximal fluids: validation of elevated peroxiredoxin 1 in patient peripheral circulation. PLOS One 2011, 6, e25056.
    • (2011) PLOS One , vol.6
    • Hoskins, E.R.1    Hood, B.L.2    Sun, M.3    Krivak, T.C.4
  • 5
    • 84355167482 scopus 로고    scopus 로고
    • Serum cancer biomarker discovery through analysis of gene expression data sets across multiple tumor and normal tissues
    • Jin, H., Lee, H. C., Park, S. S., Jeong, Y. S. et al., Serum cancer biomarker discovery through analysis of gene expression data sets across multiple tumor and normal tissues. J. Biomed. Inform. 2011, 44, 1076-1085.
    • (2011) J. Biomed. Inform. , vol.44 , pp. 1076-1085
    • Jin, H.1    Lee, H.C.2    Park, S.S.3    Jeong, Y.S.4
  • 6
    • 79956266421 scopus 로고    scopus 로고
    • Proteomic technologies for the identification of disease biomarkers in serum: advances and challenges ahead
    • Ray, S., Reddy, P. J., Jain, R., Gollapalli, K. et al., Proteomic technologies for the identification of disease biomarkers in serum: advances and challenges ahead. Proteomics 2011, 11, 2139-2161.
    • (2011) Proteomics , vol.11 , pp. 2139-2161
    • Ray, S.1    Reddy, P.J.2    Jain, R.3    Gollapalli, K.4
  • 7
    • 79952380990 scopus 로고    scopus 로고
    • Differential proteomic analysis of renal cell carcinoma tissue interstitial fluid
    • Teng, P. N., Hood, B. L., Sun, M., Dhir, R. et al., Differential proteomic analysis of renal cell carcinoma tissue interstitial fluid. J. Proteome Res. 2011, 10, 1333-1342.
    • (2011) J. Proteome Res. , vol.10 , pp. 1333-1342
    • Teng, P.N.1    Hood, B.L.2    Sun, M.3    Dhir, R.4
  • 8
    • 84868126419 scopus 로고    scopus 로고
    • Mass spectrometry-based detection and quantification of plasma glycoproteins using selective reaction monitoring
    • Kim, Y. J., Zaidi-Ainouch, Z., Gallien, S., Domon, B. Mass spectrometry-based detection and quantification of plasma glycoproteins using selective reaction monitoring. Nat. Protoc. 2012, 7, 859-871.
    • (2012) Nat. Protoc. , vol.7 , pp. 859-871
    • Kim, Y.J.1    Zaidi-Ainouch, Z.2    Gallien, S.3    Domon, B.4
  • 9
    • 80052024809 scopus 로고    scopus 로고
    • Development of quantitative plasma N-glycoproteomics using label-free 2-D LC-MALDI MS and its applicability for biomarker discovery in hepatocellular carcinoma
    • Ishihara, T., Fukuda, I., Morita, A., Takinami, Y. et al., Development of quantitative plasma N-glycoproteomics using label-free 2-D LC-MALDI MS and its applicability for biomarker discovery in hepatocellular carcinoma. J. Proteomics 2011, 74, 2159-2168.
    • (2011) J. Proteomics , vol.74 , pp. 2159-2168
    • Ishihara, T.1    Fukuda, I.2    Morita, A.3    Takinami, Y.4
  • 10
    • 79959270103 scopus 로고    scopus 로고
    • A proteomics platform combining depletion, multi-lectin affinity chromatography (M-LAC), and isoelectric focusing to study the breast cancer proteome
    • Zeng, Z., Hincapie, M., Pitteri, S. J., Hanash, S. et al., A proteomics platform combining depletion, multi-lectin affinity chromatography (M-LAC), and isoelectric focusing to study the breast cancer proteome. Anal. Chem. 2011, 83, 4845-4854.
    • (2011) Anal. Chem. , vol.83 , pp. 4845-4854
    • Zeng, Z.1    Hincapie, M.2    Pitteri, S.J.3    Hanash, S.4
  • 11
    • 0036549767 scopus 로고    scopus 로고
    • Discordant protein and mRNA expression in lung adenocarcinomas
    • Chen, G., Gharib, T. G., Huang, C. C., Taylor, J. et al., Discordant protein and mRNA expression in lung adenocarcinomas. Mol. Cell. Proteomics 2002, 1, 304-313.
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 304-313
    • Chen, G.1    Gharib, T.G.2    Huang, C.C.3    Taylor, J.4
  • 12
    • 0037151120 scopus 로고    scopus 로고
    • Global and specific translational control by rapamycin in T cells uncovered by microarrays and proteomics
    • Grolleau, A., Bowman, J., Pradet-Balade, B., Hanash, S. et al., Global and specific translational control by rapamycin in T cells uncovered by microarrays and proteomics. J. Biol. Chem. 2002, 277, 22175-22184.
    • (2002) J. Biol. Chem. , vol.277 , pp. 22175-22184
    • Grolleau, A.1    Bowman, J.2    Pradet-Balade, B.3    Hanash, S.4
  • 13
    • 84862563464 scopus 로고    scopus 로고
    • Integration of proteomics into systems biology of cancer. Wiley interdisciplinary reviews systems biology and medicine
    • Hanash, S., Schliekelman, M., Zhang, Q., Taguchi, A., Integration of proteomics into systems biology of cancer. Wiley interdisciplinary reviews systems biology and medicine. WIREs Syst. Biol. Med. 2012, 4, 327-337.
    • (2012) WIREs Syst. Biol. Med. , vol.4 , pp. 327-337
    • Hanash, S.1    Schliekelman, M.2    Zhang, Q.3    Taguchi, A.4
  • 14
    • 84862024643 scopus 로고    scopus 로고
    • Advances in human proteomics at high scale with the SOMAscan proteomics platform
    • Gold, L., Walker, J. J., Wilcox, S. K., Williams, S., Advances in human proteomics at high scale with the SOMAscan proteomics platform. Nat. Biotechnol. 2011, 29, 543-549.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 543-549
    • Gold, L.1    Walker, J.J.2    Wilcox, S.K.3    Williams, S.4
  • 15
    • 81855164054 scopus 로고    scopus 로고
    • Antibody array analysis of labelled proteomes: how should we control specificity
    • Holm, A., Wu, W., Lund-Johansen, F., Antibody array analysis of labelled proteomes: how should we control specificity? Nat. Biotechnol. 2011, 29, 578-585.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 578-585
    • Holm, A.1    Wu, W.2    Lund-Johansen, F.3
  • 16
    • 84860854049 scopus 로고    scopus 로고
    • Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics
    • Shi, T., Su, D., Liu, T., Tang, K. et al., Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics. Proteomics 2012, 12, 1074-1092.
    • (2012) Proteomics , vol.12 , pp. 1074-1092
    • Shi, T.1    Su, D.2    Liu, T.3    Tang, K.4
  • 18
    • 34948876373 scopus 로고    scopus 로고
    • Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes
    • Faca, V., Pitteri, S. J., Newcomb, L., Glukhova, V. et al., Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes. J. Proteome Res. 2007, 6, 3558-3565.
    • (2007) J. Proteome Res. , vol.6 , pp. 3558-3565
    • Faca, V.1    Pitteri, S.J.2    Newcomb, L.3    Glukhova, V.4
  • 19
    • 79951518985 scopus 로고    scopus 로고
    • Mining the plasma proteome for disease applications across seven logs of protein abundance
    • Zhang, Q., Faca, V., Hanash, S., Mining the plasma proteome for disease applications across seven logs of protein abundance. J. Proteome Res. 2011, 10, 46-50.
    • (2011) J. Proteome Res. , vol.10 , pp. 46-50
    • Zhang, Q.1    Faca, V.2    Hanash, S.3
  • 20
    • 84863393526 scopus 로고    scopus 로고
    • Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC-MS/MS and versatile peptide fragmentation modes
    • Michalski, A., Damoc, E., Lange, O., Denisov, E. et al., Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC-MS/MS and versatile peptide fragmentation modes. Mol. Cell Proteomics 2012, 11, O111.013698.
    • (2012) Mol. Cell Proteomics , vol.11
    • Michalski, A.1    Damoc, E.2    Lange, O.3    Denisov, E.4
  • 21
    • 79959499115 scopus 로고    scopus 로고
    • A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas
    • Farrah, T., Deutsch, E. W., Omenn, G. S., Campbell, D. S. et al., A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas. Mol. Cell Proteomics 2011, 10, M110 006353.
    • (2011) Mol. Cell Proteomics , vol.10
    • Farrah, T.1    Deutsch, E.W.2    Omenn, G.S.3    Campbell, D.S.4
  • 22
    • 77955265991 scopus 로고    scopus 로고
    • Postmenopausal estrogen and progestin effects on the serum proteome
    • Pitteri, S. J., Hanash, S. M., Aragaki, A., Amon, L. M. et al., Postmenopausal estrogen and progestin effects on the serum proteome. Genome Med. 2009, 1, 121.
    • (2009) Genome Med. , vol.1 , pp. 121
    • Pitteri, S.J.1    Hanash, S.M.2    Aragaki, A.3    Amon, L.M.4
  • 23
    • 78651305024 scopus 로고    scopus 로고
    • Novel proteins associated with risk for coronary heart disease or stroke among postmenopausal women identified by in-depth plasma proteome profiling
    • Prentice, R. L., Paczesny, S., Aragaki, A., Amon, L. M. et al., Novel proteins associated with risk for coronary heart disease or stroke among postmenopausal women identified by in-depth plasma proteome profiling. Genome Med. 2010, 2, 48.
    • (2010) Genome Med. , vol.2 , pp. 48
    • Prentice, R.L.1    Paczesny, S.2    Aragaki, A.3    Amon, L.M.4
  • 24
    • 79952403640 scopus 로고    scopus 로고
    • Integrated mass spectrometry-based analysis of plasma glycoproteins and their glycan modifications
    • Wang, H., Wong, C. H., Chin, A., Taguchi, A. et al., Integrated mass spectrometry-based analysis of plasma glycoproteins and their glycan modifications. Nat. Protoc. 2011, 6, 253-269.
    • (2011) Nat. Protoc. , vol.6 , pp. 253-269
    • Wang, H.1    Wong, C.H.2    Chin, A.3    Taguchi, A.4
  • 25
    • 33644875983 scopus 로고    scopus 로고
    • PRIDE: a public repository of protein and peptide identifications for the proteomics community
    • Jones, P., Cote, R. G., Martens, L., Quinn, A. F. et al., PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res. 2006, 34, D659-D63.
    • (2006) Nucleic Acids Res. , vol.34
    • Jones, P.1    Cote, R.G.2    Martens, L.3    Quinn, A.F.4
  • 27
    • 33749137280 scopus 로고    scopus 로고
    • UniPep-a database for human N-linked glycosites: a resource for biomarker discovery
    • Zhang, H., Loriaux, P., Eng, J., Campbell, D. et al., UniPep-a database for human N-linked glycosites: a resource for biomarker discovery. Genome Biol. 2006, 7, R73.
    • (2006) Genome Biol. , vol.7
    • Zhang, H.1    Loriaux, P.2    Eng, J.3    Campbell, D.4
  • 28
    • 11144320641 scopus 로고    scopus 로고
    • Open source system for analyzing, validating, and storing protein identification data
    • Craig, R., Cortens, J. P., Beavis, R. C., Open source system for analyzing, validating, and storing protein identification data. J. Proteome Res. 2004, 3, 1234-1242.
    • (2004) J. Proteome Res. , vol.3 , pp. 1234-1242
    • Craig, R.1    Cortens, J.P.2    Beavis, R.C.3
  • 29
    • 38949210266 scopus 로고    scopus 로고
    • Human proteinpedia enables sharing of human protein data
    • Mathivanan, S., Ahmed, M., Ahn, N. G., Alexandre, H. et al., Human proteinpedia enables sharing of human protein data. Nat. Biotechnol. 2008, 26, 164-167.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 164-167
    • Mathivanan, S.1    Ahmed, M.2    Ahn, N.G.3    Alexandre, H.4
  • 30
    • 70449089865 scopus 로고    scopus 로고
    • Matrix-insensitive protein assays push the limits of biosensors in medicine
    • Gaster, R. S., Hall, D. A., Nielsen, C. H., Osterfeld, S. J. et al., Matrix-insensitive protein assays push the limits of biosensors in medicine. Nat. Med. 2009, 15, 1327-1332.
    • (2009) Nat. Med. , vol.15 , pp. 1327-1332
    • Gaster, R.S.1    Hall, D.A.2    Nielsen, C.H.3    Osterfeld, S.J.4
  • 31
    • 33846946793 scopus 로고    scopus 로고
    • Antibody array profiling reveals serum TSP-1 as a marker to distinguish benign from malignant prostatic disease
    • Shafer, M. W., Mangold, L., Partin, A. W., Haab, B. B., Antibody array profiling reveals serum TSP-1 as a marker to distinguish benign from malignant prostatic disease. Prostate 2007, 67, 255-267.
    • (2007) Prostate , vol.67 , pp. 255-267
    • Shafer, M.W.1    Mangold, L.2    Partin, A.W.3    Haab, B.B.4
  • 32
  • 33
    • 60349125650 scopus 로고    scopus 로고
    • Functionalizable surface platform with reduced nonspecific protein adsorption from full blood plasma-material selection and protein immobilization optimization
    • Vaisocherova, H., Zhang, Z., Yang, W., Cao, Z. et al., Functionalizable surface platform with reduced nonspecific protein adsorption from full blood plasma-material selection and protein immobilization optimization. Biosens. Bioelectron. 2009, 24, 1924-1930.
    • (2009) Biosens. Bioelectron. , vol.24 , pp. 1924-1930
    • Vaisocherova, H.1    Zhang, Z.2    Yang, W.3    Cao, Z.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.