Metabolic and proteomic adaptation of Lactobacillus rhamnosus strains during growth under cheese-like environmental conditions compared to de Man, Rogosa, and Sharpe medium

Proteomics

Volumn 12, Issue 21, 2012, Pages 3206-3218

  Bove, Claudio Giorgio ^a   De Angelis, Maria ^b   Gatti, Monica ^a   Calasso, Maria ^b   Neviani, Erasmo ^a   Gobbetti, Marco ^b  

^a UNIVERSITY OF PARMA   (Italy)

^b UNIVERSITY OF BARI   (Italy)

Author keywords

Cheese; Lactobacillus rhamnosus; Metabolic and proteomic adaptation; Micro biology

Indexed keywords

ACETIC ACID; EXOPOLYSACCHARIDE; LACTIC ACID;

ACIDIFICATION; ADAPTATION; AMINO ACID SYNTHESIS; ARTICLE; BACTERIAL CELL WALL; BACTERIAL GROWTH; BACTERIAL STRAIN; CARBOHYDRATE METABOLISM; CARBON SOURCE; CHEESE; CHEESE BROTH; CULTURE MEDIUM; ENVIRONMENTAL FACTOR; FERMENTATION; GLYCOLYSIS; LACTOBACILLUS HELVETICUS; LACTOBACILLUS RHAMNOSUS; MAN ROGOSA AND SHARP BROTH; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MICROFILTRATION; MILK; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION REDUCTION REACTION; PASTEURIZATION; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEOMICS; SEQUENCE ANALYSIS;

ANALYSIS OF VARIANCE; CHEESE; CLUSTER ANALYSIS; COLONY COUNT, MICROBIAL; CULTURE MEDIA; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FERMENTATION; FOOD MICROBIOLOGY; KINETICS; LACTOBACILLUS RHAMNOSUS; METABOLIC NETWORKS AND PATHWAYS; METABOLOME; PROTEOME;

LACTOBACILLUS RHAMNOSUS;

EID: 84868087230     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201200157     Document Type: Article

References (37)

1. Gobbetti, M., De Angelis, M., Di Cagno, R., Rizzello, C. G., in: Weimer, B. (Ed.), Improving the Flavour of Cheese, Woodhead Publishing, USA 2007, pp. 121-156.
2. Peterson, S. D., Marshall, R. T., Non-starter lactobacilli in Cheddar cheese: a review. J. Dairy Sci. 1990, 73, 1395-1410.
3. Gagnaire, V., Piota, M., Camiera, B., Vissers, J. P. C. et al., Survey of bacterial proteins released in cheese: a proteomic approach. Int. J. Food Microbiol. 2004, 94, 185-201.
4. Gatti M., De Dea Lindner, J., De Lorentiis, A., Bottari, B. et al., Dynamics of whole and lysed bacterial cells during Parmigiano Reggiano cheese production and ripening. Appl. Environ. Microbiol. 2008, 74, 6161-6167.
5. Bernardeau, M., Vernoux, J. P., Henri-Dubernet, S., Guéguen, M., Safety assessment of dairy microorganisms: the Lactobacillus genus. Int. J. Food Microbiol. 2008, 126, 278-285.
6. De Dea Lindner, J., Bernini, V., De Lorentiis, A., Pecorari, A. et al., Parmigiano Reggiano cheese: evolution of cultivable and total lactic microflora and peptidase activities during manufacture and ripening. Dairy Sci. Technol. 2008, 88, 511-523.
7. Koskenniemi, K., Koponen, J., Kankainen, M., Savijoki, K. et al., Proteome analysis of Lactobacillus rhamnosus GG using 2D DIGE and mass spectrometry shows differential protein production in laboratory and industrial-type growth media. Proteome Res. 2009, 8, 4993-5007.
8. Koskenniemi, K., Laakso, K., Koponen, J., Kankainen, M. et al., Proteomics and transcriptomics characterization of bile stress response in probiotic Lactobacillus rhamnosus GG. Mol. Cell. Proteomics 2011, 10, M110.002741.
9. Vancanneut, M., Huys, G., Lefebvre, K., Vankerckhoven, V. et al., Intraspecific genotypic characterization of Lactobacillus rhamnosus strains intended for probiotic use and isolates of human origin. Appl. Environ. Microbiol. 2006, 72, 5376-5383.
10. Goh, Y., Klaenhammer, T. R., Genomic features of Lactobacillus species. Front. Biosci. 2009, 14, 1362-1386.
11. Morita, H., Toh, H., Oshima, K., Murakami, M., Taylor, T. D. et al., Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103. J. Bacterol. 2009, 191, 7630-7631.
12. Cai, H., Thompson, R., Budinich, M. F., Broadbent, J. R. et al., Genome sequence and comparative genome analysis of Lactobacillus casei: insights into their niche-associated evolution. Gen. Biol. Evol. 2009, 9, 239-257.
13. Succi, M., Tremonte, P., Reale, A., Sorrentino, E. et al., Bile salt and acid tolerance of Lactobacillus rhamnosus strains isolated from Parmigiano Reggiano cheese. FEMS Microbiol. Lett. 2005, 244, 129-137.
14. Savijoki, K., Lietzn, N., Kankainen, M., Alatossava, T. et al., Comparative proteome cataloging of Lactobacillus rhamnosus strains GG and Lc705. J. Proteome Res. 2011, 10, 3460-3473.
15. De Angelis, M., Gobbetti, M., Environmental stress responses in Lactobacillus: a review. Proteomics 2004, 4, 106-122.
16. Neviani, E., De Dea Lindner, J., Bernini, V., Gatti, M., Recovery and differentiation of long ripened cheese microflora through a new cheese-based cultural medium. Food Microbiol. 2009, 26, 240-245.
17. Bove, C. G., De Dea Lindner, J., Lazzi, C., Gatti, M. et al., Evaluation of genetic polymorphism among Lactobacillus rhamnosus non-starter Parmigiano Reggiano cheese strains. Int. J. Food Microbiol. 2011, 144, 569-572.
18. De Angelis, M., Di Cagno, R., Gallo, G., Curci, M. et al., Molecular and functional characterization of Lactobacillus sanfranciscensis strains isolated from sourdoughs. Int. J. Food Microbiol. 2007, 114, 69-82.
19. Siragusa, S., Fontana, C., Cappa, F., Caputo, L. et al., Disruption of the gene encoding glutamate dehydrogenase affects growth, amino acids catabolism and survival of Lactobacillus plantarum UC1001. Int. Dairy J. 2011, 21, 59-68.
20. De Angelis, M., Bini, L., Pallini, V., Cocconcelli, P. S. et al., The acid stress response in Lactobacillus sanfranciscensis CB1. Microbiology 2001, 147, 1863-1873.
21. Bradford, M., A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72, 248-254.
22. Görg, A., Postel, W., Gunther, S., The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 1988, 9, 531-546.
23. Hochstrasser, D. F., Harrington, M. G., Hochstrasser, A. C., Miller, M. J. et al., Methods for increasing the resolution of two dimensional protein electrophoresis. Anal. Biochem. 1988, 173, 424-435.
24. Shevchenko, A., Wilm, M., Vorm, O., Mann, M., Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 1993, 68, 850-858.
25. Bini, L., Magi, B., Marzocchi, B., Arcuri, F. et al., Protein expression profiles in human breast ductal carcinoma and histologically normal tissue. Electrophoresis 1997, 18, 2832-2841.
26. Jacobsen, S., Grove, H., Jensen, K. N., Sorensen, H. A. et al., Multivariate analysis of 2-DE protein patterns: practical approaches. Electrophoresis 2007, 28, 1289-1299.
27. Meunier, B., Dumas, E., Piec, I., Bechet, D. et al., Assessment of hierarchical clustering methodologies for proteomic data mining. J. Proteome Res. 2007, 6, 358-366.
28. Shevchenko, A., Tomas, H., Vorm, O., Havlis, J. et al., In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat. Protoc. 2006, 1, 2856-2860.
29. Schürenberg, M., Luebbert, C., Eickhoff, H., Kalkum, M. et al., Prestructured MALDI-MS sample supports. Anal. Chem. 2000, 72, 3436-3442.
30. Suckau, D., Resemann, A., Schuerenberg, M., Hufnagel, P. et al., A novel MALDI LIFT-TOF/TOF mass spectrometer for proteomics. Anal. Bioanal. Chem. 2003, 376, 952-965.
31. De Angelis, M., Cassone, A., Rizzello, C. G., Gagliardi, F. et al., Mechanism of degradation of immunogenic gluten epitopes from Triticum turgidum L. var. durum by sourdough lactobacilli and fungal proteases. Appl. Environ. Microbiol. 2010, 76, 508-518.
32. Bessman, M. J., Frick, D. N., O'Handley, S. F., The MutT proteins or 'Nudix' hydrolases, a family of versatile, widely distributed, 'housecleaning' enzymes. J. Biol. Chem. 1996, 271, 25059-25062.
33. Allen, K. N., Dunaway-Mariano, D. Phosphoryl group transfer: evolution of a catalytic scaffold. Trends Biochem. Sci. 2004, 29, 495-503.
34. Jyoti, B. D., Suresh, A. K., Venkatesh, K. V., Diacetyl production and growth of Lactobacillus rhamnosus on multiple substrates. World J. Microbiol. Biotechnol. 2003, 19, 509-514.
35. Chandra, G., Chater, K., F., Bornemann, S., Unexpected and widespread connections between bacterial glycogen and trehalose metabolism. Microbiology 2011, 157, 1565-1572.
36. Seibold, G. M., Hagmann, C. T., Schietzel, M., Emer, D. et al., The transcriptional regulators RamA and RamB are involved in the regulation of glycogen synthesis in Corynebacterium glutamicum. Microbiology 2010, 156, 1256-1263.
37. Ganesan, B., Weimer, B. C., in: Weimer, B. C. (Ed.), Improving the Flavour of Cheese, Woodhead Publishing, USA 2007, pp. 70-101.