Integrated visualization of gene network and ontology applying a hierarchical graph visualization technique

Proceedings of the International Conference on Information Visualisation

Volumn , Issue , 2012, Pages 81-86

  Nakazawa, Rina ^a   Itoh, Takayuki ^a   Sese, Jun ^b   Terada, Aika ^b  

^a OCHANOMIZU UNIVERSITY   (Japan)

^b TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

Edge Bundling; Gene Network; Gene Ontology; Hierarchical Graph

Indexed keywords

EDGE BUNDLING; GENE FUNCTION; GENE NETWORKS; GENE ONTOLOGY; GENE-GENE INTERACTION; HIERARCHICAL GRAPHS; TRADITIONAL TECHNIQUES;

VISUALIZATION;

GENES;

EID: 84867917930     PISSN: 10939547     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IV.2012.24     Document Type: Conference Paper

References (13)

1. The Gene Ontology, http://www.geneontology.org/
2. iRefIndex, http://irefindex.uio.no/wiki/iRefIndex
3. B. Breitkreutz, C. Stark, M. Tyers, Osprey: A Network Visualization System, Genome Biology, 4:R22, 2003.
4. A. Clauset, M. E. J. Newman, C. Moore, Finding Community Structure in Very Large Networks, Physical Review, E70, 066111, 2004.
5. M. C. J. Dokulil, J. Katreniakova, Edge Routing and Bundling for Graphs with Fixed Node Positions, International Conference on Information Visualisation, 475-481, 2011.
6. E. R. Gansner, Y. Hu, S. North, C. Scheidegger, Multilevel Agglomerative Edge Bundling for Visualizing Large Graphs, IEEE Pacific Visualization Symposium, 187-194, 2011.
7. D. Holten, Hierarchical Edge Bundles: Visualization of Adjacency Relations in Hierarchical Data, IEEE Transactions On Visualization And Computer Graphics, 12(5), 741-748, 2006.
8. D. Holten, J. van Wijk, Force-Directed Edge Bundling for Graph Visualization, Computer Graphics Forum, 28(3), 983-990, 2009.
9. T. Itoh, C. Muelder, K. Ma, J. Sese, A Hybrid Space-Filling and Force-Directed Layout Method for Visualizing Multiple-Category Graphs, IEEE Pacific Visualization Symposium, 121-128, 2009.
10. C. Muelder, K.-L. Ma, A Treemap Based Method for Rapid Layout of Large Graphs, IEEE Pacific Visualization Symposium, 231-238, 2008.
11. K. Nishiyama, T. Itoh, Visualization of Hierarchical Gene Network using HeiankyoView, The Journal of Society for Art and Science, 6(3), 106-116, 2007. (in Japanese)
12. S. Zhao, M. J. McGuffin, M. H. Chignell, Elastic Hierarchies: Combining Treemaps and Node-Link Diagrams, IEEE Information Visualization, 57-64, 2005.
13. H. Zhou, X. Yuan, W. Cui, H. Qu, B. Chen. Energy-Based Hierarchical Edge Clustering of Graphs, IEEE Pacific Visualization Symposium, 55-61, 2008.