Analysis of the swine tracheobronchial lymph node transcriptomic response to infection with a Chinese highly pathogenic strain of porcine reproductive and respiratory syndrome virus

BMC Veterinary Research

Volumn 8, Issue , 2012, Pages

  Miller, Laura C ^a   Fleming, Damarius ^b   Arbogast, Andrew ^c   Bayles, Darrell O ^a   Guo, Baoqing ^b   Lager, Kelly M ^a   Henningson, Jamie N ^a   Schlink, Sarah N ^a   Yang, Han Chun ^d   Faaberg, Kay S ^a   Kehrli Jr, Marcus E ^a  

^a U S DEPARTMENT OF AGRICULTURE   (United States)

^b IOWA STATE UNIVERSITY   (United States)

^c Iowa State University   (United States)

^d CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTERIVIRUS; PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS; SUIDAE;

RNA; TRANSCRIPTOME;

ANIMAL; ARTERIVIRUS; ARTICLE; CHINA; GENE EXPRESSION REGULATION; GENETICS; IMMUNOLOGY; LYMPH NODE; METABOLISM; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; SWINE; VIROLOGY;

ANIMALS; CHINA; GENE EXPRESSION REGULATION; LYMPH NODES; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS; RNA; SWINE; TRANSCRIPTOME;

EID: 84867898413     PISSN: None     EISSN: 17466148     Source Type: Journal    
DOI: 10.1186/1746-6148-8-208     Document Type: Article

References (38)

1. Neumann EJ, Kliebenstein JB, Johnson CD, Mabry JW, Bush EJ, Seitzinger AH, Green AL, Zimmerman JJ. Assessment of the economic impact of porcine reproductive and respiratory syndrome on swine production in the United States. J Am Vet Med Assoc 2005, 227(3):385-392. 10.2460/javma.2005.227.385, 16121604.
2. Zimmerman JJ, Yoon KJ, Wills RW, Swenson SL. General overview of PRRSV: a perspective from the United States. Vet Microbiol 1997, 55(1-4):187-196.
3. Done SH, Paton DJ. Porcine reproductive and respiratory syndrome: clinical disease, pathology and immunosuppression. Vet Rec 1995, 136(2):32-35. 10.1136/vr.136.2.32, 7709569.
4. Feng W, Laster SM, Tompkins M, Brown T, Xu JS, Altier C, Gomez W, Benfield D, McCaw MB. In utero infection by porcine reproductive and respiratory syndrome virus is sufficient to increase susceptibility of piglets to challenge by Streptococcus suis type II. J Virol 2001, 75(10):4889-4895. 10.1128/JVI.75.10.4889-4895.2001, 114243, 11312360.
5. Rossow KD, Collins JE, Goyal SM, Nelson EA, Christopher-Hennings J, Benfield DA. Pathogenesis of porcine reproductive and respiratory syndrome virus infection in gnotobiotic pigs. Vet Pathol 1995, 32(4):361-373. 10.1177/030098589503200404, 7483210.
6. Wills RW, Gray JT, Fedorka-Cray PJ, Yoon KJ, Ladely S, Zimmerman JJ. Synergism between porcine reproductive and respiratory syndrome virus (PRRSV) and Salmonella choleraesuis in swine [In Process Citation]. Vet Microbiol 2000, 71(3-4):177-192.
7. Zeman D, Neiger R, Yaeger M, Nelson E, Benfield D, Leslie-Steen P, Thomson J, Miskimins D, Daly R, Minehart M. Laboratory investigation of PRRS virus infection in three swine herds. J Vet Diagn Invest 1993, 5(4):522-528. 10.1177/104063879300500404, 8286449.
8. Mengeling WL, Lager KM. A brief review of procedures and potential problems associated with the diagnosis of porcine reproductive and respiratory syndrome [In Process Citation]. Vet Res 2000, 31(1):61-69.
9. Goldberg TL, Hahn EC, Weigel RM, Scherba G. Genetic, geographical and temporal variation of porcine reproductive and respiratory syndrome virus in Illinois. J Gen Virol 2000, 81(Pt 1):171-179.
10. Goldberg TL, Weigel RM, Hahn EC, Scherba G. Associations between genetics, farm characteristics and clinical disease in field outbreaks of porcine reproductive and respiratory syndrome virus [In Process Citation]. Prev Vet Med 2000, 43(4):293-302. 10.1016/S0167-5877(99)00104-X, 10718497.
11. Halbur PG, Paul PS, Frey ML, Landgraf J, Eernisse K, Meng XJ, Lum MA, Andrews JJ, Rathje JA. Comparison of the pathogenicity of two US porcine reproductive and respiratory syndrome virus isolates with that of the Lelystad virus. Vet Pathol 1995, 32(6):648-660. 10.1177/030098589503200606, 8592800.
12. Halbur PG, Paul PS, Meng XJ, Lum MA, Andrews JJ, Rathje JA. Comparative pathogenicity of nine US porcine reproductive and respiratory syndrome virus (PRRSV) isolates in a five-week-old cesarean- derived, colostrum-deprived pig model. J Vet Diagn Invest 1996, 8(1):11-20. 10.1177/104063879600800103, 9026065.
13. Keffaber KK. Reproductive failure of unknown etiology. Am Assoc Swine Pract News 1989, 1:1-9.
14. Lewis CR, Ait-Ali T, Clapperton M, Archibald AL, Bishop S. Genetic perspectives on host responses to porcine reproductive and respiratory syndrome (PRRS). Viral Immunol 2007, 20(3):343-358. 10.1089/vim.2007.0024, 17931105.
15. Meng XJ. Heterogeneity of porcine reproductive and respiratory syndrome virus: implications for current vaccine efficacy and future vaccine development. Vet Microbiol 2000, 74(4):309-329. 10.1016/S0378-1135(00)00196-6, 10831854.
16. Wensvoort G. Lelystad virus and the porcine epidemic abortion and respiratory syndrome. Vet Res 1993, 24(2):117-124.
17. Tian K, Yu X, Zhao T, Feng Y, Cao Z, Wang C, Hu Y, Chen X, Hu D, Tian X, et al. Emergence of fatal PRRSV variants: unparalleled outbreaks of atypical PRRS in China and molecular dissection of the unique hallmark. PLoS One 2007, 2(6):e526. 10.1371/journal.pone.0000526, 1885284, 17565379.
18. Lv J, Zhang J, Sun Z, Liu W, Yuan S. An infectious cDNA clone of a highly pathogenic porcine reproductive and respiratory syndrome virus variant associated with porcine high fever syndrome. J Gen Virol 2008, 89(Pt 9):2075-2079.
19. Zhou L, Zhang J, Zeng J, Yin S, Li Y, Zheng L, Guo X, Ge X, Yang H. The 30-amino-acid deletion in the Nsp2 of highly pathogenic porcine reproductive and respiratory syndrome virus emerging in China is not related to its virulence. J Virol 2009, 83(10):5156-5167. 10.1128/JVI.02678-08, 2682102, 19244318.
20. Guo B, Lager KM, Henningson JN, Miller LC, Schlink SN, Kappes MA, Kehrli ME, Brockmeier SL, Nicholson TL, Yang H-C, et al. Experimental infection of united states swine with a chinese highly pathogenic strain of porcine reproductive and respiratory syndrome virus. Virology 2012, http://dx.doi.org/10.1016/j.virol.2012.09.013.
21. Robertson G, Schein J, Chiu R, Corbett R, Field M, Jackman SD, Mungall K, Lee S, Okada HM, Qian JQ, et al. De novo assembly and analysis of RNA-seq data. Nat Methods 2010, 7(11):909-912. 10.1038/nmeth.1517, 20935650.
22. Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 2010, 28(5):511-515. 10.1038/nbt.1621, 3146043, 20436464.
23. Seal RL, Gordon SM, Lush MJ, Wright MW, Bruford EA. Genenames.org: the HGNC resources in 2011. Nucleic Acids Res 2011, 39(Database issue):D514-519. 3013772, 20929869.
24. Dai MH, Xia T, Chen XD, Gan L, Feng SQ, Qiu H, Peng Y, Yang ZQ. Cloning and characterization of porcine resistin gene. Domest Anim Endocrinol 2006, 30(2):88-97. 10.1016/j.domaniend.2005.06.003, 16023825.
25. Chen H, Lunney JK, Cheng L, Li X, Cao J, Zhu M, Zhao S. Porcine S100A8 and S100A9: molecular characterizations and crucial functions in response to Haemophilus parasuis infection. Dev Comp Immunol 2011, 35(4):490-500. 10.1016/j.dci.2010.11.017, 21185856.
26. Yang W, Block ER. Effect of hypoxia and reoxygenation on the formation and release of reactive oxygen species by porcine pulmonary artery endothelial cells. J Cell Physiol 1995, 164(2):414-423. 10.1002/jcp.1041640222, 7622587.
27. Suzuki A, Yamada R, Yamamoto K. Citrullination by peptidylarginine deiminase in rheumatoid arthritis. Ann N Y Acad Sci 2007, 1108:323-339. 10.1196/annals.1422.034, 17893996.
28. Cases S, Smith SJ, Zheng YW, Myers HM, Lear SR, Sande E, Novak S, Collins C, Welch CB, Lusis AJ, et al. Identification of a gene encoding an acyl CoA:diacylglycerol acyltransferase, a key enzyme in triacylglycerol synthesis. Proc Natl Acad Sci USA 1998, 95(22):13018-13023. 10.1073/pnas.95.22.13018, 23692, 9789033.
29. Xiao S, Mo D, Wang Q, Jia J, Qin L, Yu X, Niu Y, Zhao X, Liu X, Chen Y. Aberrant host immune response induced by highly virulent PRRSV identified by digital gene expression tag profiling. BMC Genomics 2010, 11:544. 10.1186/1471-2164-11-544, 3091693, 20929578.
30. Lager KM, Faaberg KS, Guo B, Brockmeier SL, Henningson JN, Schlink SN, Miller LC, Kappes MA, Kehrli ME, Loving CL, et al. HP-PRRSV challenge of 4 and 10-week-old pigs. 5th PRRSpective Symposium: 2011; Bangkok, Thailand 2011, Germany: Boehringer Ingelheim Animal Health GmbH.
31. Miller LC, Neill JD, Harhay GP, Lager KM, Laegreid WW, Kehrli ME. In-depth global analysis of transcript abundance levels in porcine alveolar macrophages following infection with porcine reproductive and respiratory syndrome virus. Adv Virol 2010, 2010:864181. 3275998, 22331987.
32. Zhou P, Zhai S, Zhou X, Lin P, Jiang T, Hu X, Jiang Y, Wu B, Zhang Q, Xu X, et al. Molecular characterization of transcriptome-wide interactions between highly pathogenic porcine reproductive and respiratory syndrome virus and porcine alveolar macrophages in vivo. Int J Biol Sci 2011, 7(7):947-959. 3157269, 21850204.
33. Lemke CD, Haynes JS, Spaete R, Adolphson D, Vorwald A, Lager K, Butler JE. Lymphoid hyperplasia resulting in immune dysregulation is caused by porcine reproductive and respiratory syndrome virus infection in neonatal pigs. J Immunol 2004, 172(3):1916-1925.
34. Wesley RD, Lager KM, Kehrli ME. Infection with Porcine reproductive and respiratory syndrome virus stimulates an early gamma interferon response in the serum of pigs. Can J Vet Res 2006, 70(3):176-182. 1477926, 16850939.
35. Opriessnig T, Yu S, Gallup JM, Evans RB, Fenaux M, Pallares F, Thacker EL, Brockus CW, Ackermann MR, Thomas P, et al. Effect of vaccination with selective bacterins on conventional pigs infected with type 2 porcine circovirus. Vet Pathol 2003, 40(5):521-529. 10.1354/vp.40-5-521, 12949409.
36. Faaberg KS, Kehrli ME, Lager KM, Guo B, Han J. In vivo growth of porcine reproductive and respiratory syndrome virus engineered nsp2 deletion mutants. Virus Res 2010, 154(1-2):77-85.
37. Brockmeier SL, Loving CL, Nicholson TL, Palmer MV. Coinfection of pigs with porcine respiratory coronavirus and Bordetella bronchiseptica. Vet Microbiol 2008, 128(1-2):36-47.
38. Costa V, Angelini C, De Feis I, Ciccodicola A. Uncovering the complexity of transcriptomes with RNA-Seq. J Biomed Biotechnol 2010, 2010:853916. 2896904, 20625424.