Molecular evolution of HA gene of the influenza A H1N1 pdm09 strain during the consecutive seasons 2009-2011 in Hangzhou, China: Several immune-escape variants without positively selected sites

Journal of Clinical Virology

Volumn 55, Issue 4, 2012, Pages 363-366

  Li, Jun ^a   Shao, Tie Juan ^b   Yu, Xin Fen ^a   Pan, Jin Cao ^a   Pu, Xiao Ying ^a   Wang, Hao Qiu ^a   Kou, Yu ^a  

^a HANGZHOU CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^b ZHEJIANG CHINESE MEDICAL UNIVERSITY   (China)

Author keywords

Antigenic drift; H1N1; Hemagglutinin; Influenza

Indexed keywords

ARTICLE; CHINA; GENE SEQUENCE; GENETIC DISTANCE; HA GENE; HUMAN; IMMUNE EVASION; INFLUENZA VIRUS A H1N1; INFLUENZA VIRUS A H1N1 PDM09; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VIRUS GENE; VIRUS STRAIN;

ANTIGENS, VIRAL; CHINA; CLUSTER ANALYSIS; EVOLUTION, MOLECULAR; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA, HUMAN; MOLECULAR SEQUENCE DATA; MUTATION, MISSENSE; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 84867855918     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2012.08.006     Document Type: Article

References (13)

1. Yang P., Shi W., Tian L., Li S., Zhang L., Huang F., et al. Serological surveillance of 2009 H1N1 influenza in China. Int J Infect Dis 2011, 15:e151-e152.
2. Ledesma J., Pozo F., Reina G., Blasco M., Rodriguez G., Montes M., et al. Genetic diversity of influenza A(H1N1)2009 virus circulating during the season 2010-2011 in Spain. J Clin Virol 2012, 53:16-21.
3. Hoffmann E., Stech J., Guan Y., Webster R.G., Perez D.R. Universal primer set for the full-length amplification of all influenza A viruses. Arch Virol 2001, 146:2275-2289.
4. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739.
5. Munoz E.T., Deem M.W. Epitope analysis for influenza vaccine design. Vaccine 2005, 23:1144-1148.
6. Deem M.W., Pan K. The epitope regions of H1-subtype influenza A, with application to vaccine efficacy. Protein Eng Des Sel 2009, 22:543-546.
7. Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24:1586-1591.
8. Barr I.G., Cui L., Komadina N., Lee R.T., Lin R.T., Deng Y., et al. A new pandemic influenza A(H1N1) genetic variant predominated in the winter 2010 influenza season in Australia, New Zealand and Singapore. Euro Surveill 2010, 15.
9. Maurer-Stroh S., Lee R.T., Eisenhaber F., Cui L., Phuah S.P., Lin R.T. A new common mutation in the hemagglutinin of the 2009 (H1N1) influenza A virus. PLoS Curr 2010, 2:RRN1162.
10. Mak G.C., Leung C.K., Cheng K.C., Wong K.Y., Lim W. Evolution of the haemagglutinin gene of the influenza A (H1N1) 2009 virus isolated in Hong Kong, 2009-2011. Euro Surveill 2011, 16.
11. Wang B., Dwyer D.E., Soedjono M., Shi H., Matlho K., Ratnamohan M., et al. Evidence of the circulation of pandemic influenza (H1N1) 2009 with D222D/G/N/S hemagglutinin polymorphisms during the first wave of the 2009 influenza pandemic. J Clin Virol 2011, 52:304-306.
12. Smith D.J., Lapedes A.S., de Jong J.C., Bestebroer T.M., Rimmelzwaan G.F., Osterhaus A.D., et al. Mapping the antigenic and genetic evolution of influenza virus. Science 2004, 305:371-376.
13. Li J., Shao T.J., Yu X.F., Ye R., Kou Y. Genetic evolution of the novel influenza A (H1N1) virus neuraminidase in Hangzhou, Zhejiang. Chin Prev Med 2011, 12:830-834.