메뉴 건너뛰기




Volumn 91, Issue 2, 2012, Pages 231-239

Development of a standardized approach for environmental microbiota investigations related to asthma development in children

Author keywords

454 Pyrosequencing; Dust microbiome; Phylogenetic microarray; Standardized sampling

Indexed keywords

RNA 16S;

EID: 84867837819     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2012.08.016     Document Type: Article
Times cited : (8)

References (32)
  • 4
    • 17344377554 scopus 로고    scopus 로고
    • Environmental exposure to endotoxin and other microbial products and the decreased risk of childhood atopy: evaluating developments since April 2002
    • Braun-Fahrlander C. Environmental exposure to endotoxin and other microbial products and the decreased risk of childhood atopy: evaluating developments since April 2002. Curr. Opin. Allergy Clin. Immunol. 2003, 3(5):325-329.
    • (2003) Curr. Opin. Allergy Clin. Immunol. , vol.3 , Issue.5 , pp. 325-329
    • Braun-Fahrlander, C.1
  • 5
    • 33748805463 scopus 로고    scopus 로고
    • Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
    • Brodie E.L., Desantis T.Z., Joyner D.C., Baek S.M., Larsen J.T., Andersen G.L., et al. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl. Environ. Microbiol. 2006, 72(9):6288-6298.
    • (2006) Appl. Environ. Microbiol. , vol.72 , Issue.9 , pp. 6288-6298
    • Brodie, E.L.1    Desantis, T.Z.2    Joyner, D.C.3    Baek, S.M.4    Larsen, J.T.5    Andersen, G.L.6
  • 7
    • 77649241023 scopus 로고    scopus 로고
    • The National Institutes of Allergy and Infectious Diseases networks on asthma in inner-city children: an approach to improved care
    • quiz 538-529
    • Busse W.W. The National Institutes of Allergy and Infectious Diseases networks on asthma in inner-city children: an approach to improved care. J. Allergy Clin. Immunol. 2010, 125(3):529-537. quiz 538-529.
    • (2010) J. Allergy Clin. Immunol. , vol.125 , Issue.3 , pp. 529-537
    • Busse, W.W.1
  • 8
    • 84990021453 scopus 로고    scopus 로고
    • Centers for Disease Control and Prevention
    • Available:, Accessed August 7, 2012
    • Centers for Disease Control and Prevention Asthma in the US Available:, Accessed August 7, 2012. http://www.cdc.gov/vitalsigns/Asthma/.
    • Asthma in the US
  • 9
    • 77955292433 scopus 로고    scopus 로고
    • Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients
    • Cox M.J., Allgaier M., Taylor B., Baek M.S., Huang Y.J., Daly R.A., et al. Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One 2010, 5(6):e11044.
    • (2010) PLoS One , vol.5 , Issue.6
    • Cox, M.J.1    Allgaier, M.2    Taylor, B.3    Baek, M.S.4    Huang, Y.J.5    Daly, R.A.6
  • 11
    • 34248159346 scopus 로고    scopus 로고
    • High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
    • DeSantis T.Z., Brodie E.L., Moberg J.P., Zubieta I.X., Piceno Y.M., Andersen G.L. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb. Ecol. 2007, 53(3):371-383.
    • (2007) Microb. Ecol. , vol.53 , Issue.3 , pp. 371-383
    • DeSantis, T.Z.1    Brodie, E.L.2    Moberg, J.P.3    Zubieta, I.X.4    Piceno, Y.M.5    Andersen, G.L.6
  • 12
    • 2442619495 scopus 로고    scopus 로고
    • Do farming exposures cause or prevent asthma? Results from a study of adult Norwegian farmers
    • Eduard W., Douwes J., Omenaas E., Heederik D. Do farming exposures cause or prevent asthma? Results from a study of adult Norwegian farmers. Thorax 2004, 59(5):381-386.
    • (2004) Thorax , vol.59 , Issue.5 , pp. 381-386
    • Eduard, W.1    Douwes, J.2    Omenaas, E.3    Heederik, D.4
  • 13
    • 56649124715 scopus 로고    scopus 로고
    • The influence of sex, handedness, and washing on the diversity of hand surface bacteria
    • Fierer N., Hamady M., Lauber C.L., Knight R. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc. Natl. Acad. Sci. U. S. A. 2008, 105(46):17994-17999.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , Issue.46 , pp. 17994-17999
    • Fierer, N.1    Hamady, M.2    Lauber, C.L.3    Knight, R.4
  • 14
    • 34250622826 scopus 로고    scopus 로고
    • Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa
    • Flanagan J.L., Brodie E.L., Weng L., Lynch S.V., Garcia O., Brown R., et al. Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa. J. Clin. Microbiol. 2007, 45(6):1954-1962.
    • (2007) J. Clin. Microbiol. , vol.45 , Issue.6 , pp. 1954-1962
    • Flanagan, J.L.1    Brodie, E.L.2    Weng, L.3    Lynch, S.V.4    Garcia, O.5    Brown, R.6
  • 15
    • 77955923362 scopus 로고    scopus 로고
    • Man's best friend? The effect of pet ownership on house dust microbial communities
    • (412 e411-413)
    • Fujimura K.E., Johnson C.C., Ownby D.R., Cox M.J., Brodie E.L., Havstad S.L., et al. Man's best friend? The effect of pet ownership on house dust microbial communities. J. Allergy Clin. Immunol. 2010, 126(2):410-412. (412 e411-413).
    • (2010) J. Allergy Clin. Immunol. , vol.126 , Issue.2 , pp. 410-412
    • Fujimura, K.E.1    Johnson, C.C.2    Ownby, D.R.3    Cox, M.J.4    Brodie, E.L.5    Havstad, S.L.6
  • 16
    • 20044386127 scopus 로고    scopus 로고
    • Inner City Asthma Study: relationships among sensitivity, allergen exposure, and asthma morbidity
    • Gruchalla R.S., Pongracic J., Plaut M., Evans R., Visness C.M., Walter M., et al. Inner City Asthma Study: relationships among sensitivity, allergen exposure, and asthma morbidity. J. Allergy Clin. Immunol. 2005, 115(3):478-485.
    • (2005) J. Allergy Clin. Immunol. , vol.115 , Issue.3 , pp. 478-485
    • Gruchalla, R.S.1    Pongracic, J.2    Plaut, M.3    Evans, R.4    Visness, C.M.5    Walter, M.6
  • 18
    • 81755178947 scopus 로고    scopus 로고
    • Porphyromonas gingivalis sinks teeth into the oral microbiota and periodontal disease
    • Honda K. Porphyromonas gingivalis sinks teeth into the oral microbiota and periodontal disease. Cell Host Microbe 2011, 10(5):423-425.
    • (2011) Cell Host Microbe , vol.10 , Issue.5 , pp. 423-425
    • Honda, K.1
  • 19
    • 79551495183 scopus 로고    scopus 로고
    • Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
    • (e371-373)
    • Huang Y.J., Nelson C.E., Brodie E.L., Desantis T.Z., Baek M.S., Liu J., et al. Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J. Allergy Clin. Immunol. 2011, 127(2):372-381. (e371-373).
    • (2011) J. Allergy Clin. Immunol. , vol.127 , Issue.2 , pp. 372-381
    • Huang, Y.J.1    Nelson, C.E.2    Brodie, E.L.3    Desantis, T.Z.4    Baek, M.S.5    Liu, J.6
  • 20
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber W., von Heydebreck A., Sueltmann H., Poustka A., Vingron M. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 2002, 18:S96-S104.
    • (2002) Bioinformatics , vol.18
    • Huber, W.1    von Heydebreck, A.2    Sueltmann, H.3    Poustka, A.4    Vingron, M.5
  • 21
    • 70350343544 scopus 로고    scopus 로고
    • Induction of intestinal Th17 cells by segmented filamentous bacteria
    • Ivanov I.I., Atarashi K., Manel N., Brodie E.L., Shima T., Karaoz U., et al. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 2009, 139(3):485-498.
    • (2009) Cell , vol.139 , Issue.3 , pp. 485-498
    • Ivanov, I.I.1    Atarashi, K.2    Manel, N.3    Brodie, E.L.4    Shima, T.5    Karaoz, U.6
  • 22
    • 31944437283 scopus 로고    scopus 로고
    • Applying epidemiologic concepts of primary, secondary, and tertiary prevention to the elimination of racial disparities in asthma
    • quiz 241-232
    • Joseph C.L., Williams L.K., Ownby D.R., Saltzgaber J., Johnson C.C. Applying epidemiologic concepts of primary, secondary, and tertiary prevention to the elimination of racial disparities in asthma. J. Allergy Clin. Immunol. 2006, 117(2):233-240. quiz 241-232.
    • (2006) J. Allergy Clin. Immunol. , vol.117 , Issue.2 , pp. 233-240
    • Joseph, C.L.1    Williams, L.K.2    Ownby, D.R.3    Saltzgaber, J.4    Johnson, C.C.5
  • 24
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu W.T., Marsh T.L., Cheng H., Forney L.J. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 1997, 63(11):4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , Issue.11 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 25
    • 0036843687 scopus 로고    scopus 로고
    • Escherichia coli gene expression responsive to levels of the response regulator EvgA
    • Masuda N., Church G.M. Escherichia coli gene expression responsive to levels of the response regulator EvgA. J. Bacteriol. 2002, 184(22):6225-6234.
    • (2002) J. Bacteriol. , vol.184 , Issue.22 , pp. 6225-6234
    • Masuda, N.1    Church, G.M.2
  • 28
    • 84884285374 scopus 로고    scopus 로고
    • R Development Core Team
    • R Foundation for Statistical Computing, Austria: Vienna
    • R Development Core Team R: a Language and Environment for Statistical Computing 2011, R Foundation for Statistical Computing, Austria: Vienna.
    • (2011) R: a Language and Environment for Statistical Computing
  • 29
    • 80054851581 scopus 로고    scopus 로고
    • Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome
    • Saulnier D.M., Riehle K., Mistretta T.A., Diaz M.A., Mandal D., Raza S., et al. Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome. Gastroenterology 2011, 141(5):1782-1791.
    • (2011) Gastroenterology , vol.141 , Issue.5 , pp. 1782-1791
    • Saulnier, D.M.1    Riehle, K.2    Mistretta, T.A.3    Diaz, M.A.4    Mandal, D.5    Raza, S.6
  • 30
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • Turnbaugh P.J., Ley R.E., Mahowald M.A., Magrini V., Mardis E.R., Gordon J.I. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444(7122):1027-1031.
    • (2006) Nature , vol.444 , Issue.7122 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5    Gordon, J.I.6
  • 32
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 2007, 73(16):5261-5267.
    • (2007) Appl. Environ. Microbiol. , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.