메뉴 건너뛰기




Volumn 14, Issue 43, 2012, Pages 15066-15077

Mesoscale simulations of biomolecular transport through nanofilters with tapered and cylindrical geometries

Author keywords

[No Author keywords available]

Indexed keywords

SERUM ALBUMIN;

EID: 84867731972     PISSN: 14639076     EISSN: None     Source Type: Journal    
DOI: 10.1039/c2cp42577g     Document Type: Article
Times cited : (7)

References (48)
  • 1
    • 84875373853 scopus 로고    scopus 로고
    • 2D versus 3D Freezing of a Lennard-Jones Fluid in a Slit Pore: A molecular Dynamics Study
    • N. Gribova et al., 2D versus 3D Freezing of a Lennard-Jones Fluid in a Slit Pore: A molecular Dynamics Study J. Phys.: Condens. Matter 2009 1 1 11
    • (2009) J. Phys.: Condens. Matter , vol.1 , pp. 1-11
    • Gribova, N.1
  • 2
    • 67649986187 scopus 로고    scopus 로고
    • Direct observation of transitions between surface-dominated and bulk diffusion regimes in nanochannels
    • N. F. Durand et al., Direct observation of transitions between surface-dominated and bulk diffusion regimes in nanochannels Anal. Chem. 2009 81 13 5407 5412
    • (2009) Anal. Chem. , vol.81 , Issue.13 , pp. 5407-5412
    • Durand, N.F.1
  • 3
    • 65949088363 scopus 로고    scopus 로고
    • Modeling the separation of macromolecules: A review of current computer simulation methods
    • G. W. Slater et al., Modeling the separation of macromolecules: A review of current computer simulation methods Electrophoresis 2009 30 5 792 818
    • (2009) Electrophoresis , vol.30 , Issue.5 , pp. 792-818
    • Slater, G.W.1
  • 4
    • 79956063817 scopus 로고    scopus 로고
    • Nano-Biotechnology: Structure and dynamics of nanoscale biosystems
    • B. A. Manjasetty T. R. G. Nair Y. S. Ramaswamy Nano-Biotechnology: Structure and Dynamics of Nanoscale Biosystems J. Res. Ind. 2008 1 1 22 26
    • (2008) J. Res. Ind. , vol.1 , Issue.1 , pp. 22-26
    • Manjasetty, B.A.1    Nair, T.R.G.2    Ramaswamy, Y.S.3
  • 5
    • 0035662355 scopus 로고    scopus 로고
    • Science and technology of nanomaterials: Current status and future prospects
    • C. N. R. Rao A. K. Cheetham Science and technology of nanomaterials: current status and future prospects J. Mater. Chem. 2001 11 12 2887 2894
    • (2001) J. Mater. Chem. , vol.11 , Issue.12 , pp. 2887-2894
    • Rao, C.N.R.1    Cheetham, A.K.2
  • 6
    • 0346037260 scopus 로고    scopus 로고
    • Mesoscopic dynamics of colloids simulated with dissipative particle dynamics and fluid particle model
    • W. Dzwinel D. A. Yuen K. Boryczko Mesoscopic dynamics of colloids simulated with dissipative particle dynamics and fluid particle model J. Mol. Model. 2002 8 1 33 43
    • (2002) J. Mol. Model. , vol.8 , Issue.1 , pp. 33-43
    • Dzwinel, W.1    Yuen, D.A.2    Boryczko, K.3
  • 7
    • 0036897817 scopus 로고    scopus 로고
    • Design of nanostructured biological materials through self-assembly of peptides and proteins
    • S. G. Zhang et al., Design of nanostructured biological materials through self-assembly of peptides and proteins Curr. Opin. Chem. Biol. 2002 6 6 865 871
    • (2002) Curr. Opin. Chem. Biol. , vol.6 , Issue.6 , pp. 865-871
    • Zhang, S.G.1
  • 9
    • 7444241436 scopus 로고    scopus 로고
    • The effect of thickness, pore size and structure of a nanomembrane on the flux and selectivity in reverse osmosis separations: A molecular dynamics study
    • S. Murad L. C. Nitsche The effect of thickness, pore size and structure of a nanomembrane on the flux and selectivity in reverse osmosis separations: a molecular dynamics study Chem. Phys. Lett. 2004 397 1-3 211 215
    • (2004) Chem. Phys. Lett. , vol.397 , Issue.13 , pp. 211-215
    • Murad, S.1    Nitsche, L.C.2
  • 10
    • 47849115392 scopus 로고    scopus 로고
    • Coarse grained molecular dynamics simulation of electromechanically-gated DNA modified conical nanopores
    • L. Hofler R. E. Gyurcsanyi Coarse grained molecular dynamics simulation of electromechanically-gated DNA modified conical nanopores Electroanalysis 2008 20 3 301 307
    • (2008) Electroanalysis , vol.20 , Issue.3 , pp. 301-307
    • Hofler, L.1    Gyurcsanyi, R.E.2
  • 11
    • 0000454817 scopus 로고
    • Mechanism of Solute Diffusion through Lipid Bilayer-Membranes by Molecular-Dynamics Simulation
    • D. Bassolinoklimas H. E. Alper T. R. Stouch Mechanism of Solute Diffusion through Lipid Bilayer-Membranes by Molecular-Dynamics Simulation J. Am. Chem. Soc. 1995 117 14 4118 4129
    • (1995) J. Am. Chem. Soc. , vol.117 , Issue.14 , pp. 4118-4129
    • Bassolinoklimas, D.1    Alper, H.E.2    Stouch, T.R.3
  • 12
    • 0030264744 scopus 로고    scopus 로고
    • Permeation process of small molecules across lipid membranes studied by molecular dynamics simulations
    • S. J. Marrink H. J. C. Berendsen Permeation process of small molecules across lipid membranes studied by molecular dynamics simulations J. Phys. Chem. 1996 100 41 16729 16738
    • (1996) J. Phys. Chem. , vol.100 , Issue.41 , pp. 16729-16738
    • Marrink, S.J.1    Berendsen, H.J.C.2
  • 13
    • 0037206208 scopus 로고    scopus 로고
    • Diffusion of gases in PEEKS membranes: Molecular dynamics simulations
    • E. Tocci et al., Diffusion of gases in PEEKS membranes: molecular dynamics simulations J. Membr. Sci. 2002 206 1-2 389 398
    • (2002) J. Membr. Sci. , vol.206 , Issue.12 , pp. 389-398
    • Tocci, E.1
  • 14
    • 42749105233 scopus 로고    scopus 로고
    • Fluctuation-driven molecular transport through an asymmetric membrane channel
    • I. Kosztin K. Schulten Fluctuation-driven molecular transport through an asymmetric membrane channel Phys. Rev. Lett. 2004 93 23 238102
    • (2004) Phys. Rev. Lett. , vol.93 , Issue.23 , pp. 238102
    • Kosztin, I.1    Schulten, K.2
  • 15
    • 65349156366 scopus 로고    scopus 로고
    • Ionic current rectification through silica nanopores
    • E. R. Cruz-Chu A. Aksimentiev K. Schulten Ionic Current Rectification Through Silica Nanopores J. Phys. Chem. C 2009 113 5 1850 1862
    • (2009) J. Phys. Chem. C , vol.113 , Issue.5 , pp. 1850-1862
    • Cruz-Chu, E.R.1    Aksimentiev, A.2    Schulten, K.3
  • 16
    • 70349281564 scopus 로고    scopus 로고
    • Molecular control of ionic conduction in polymer nanopores
    • discussion 81-93
    • E. R. Cruz-Chu et al., Molecular control of ionic conduction in polymer nanopores Faraday Discuss. 2009 143 47 62
    • (2009) Faraday Discuss. , vol.143 , pp. 47-62
    • Cruz-Chu, E.R.1
  • 18
    • 23044484696 scopus 로고    scopus 로고
    • Membrane fractionation of milk: State of the art and challenges
    • G. Brans et al., Membrane fractionation of milk: state of the art and challenges J. Membr. Sci. 2004 243 1-2 263 272
    • (2004) J. Membr. Sci. , vol.243 , Issue.12 , pp. 263-272
    • Brans, G.1
  • 19
    • 19944408971 scopus 로고    scopus 로고
    • Limitations of current proteomics technologies
    • S. Garbis G. Lubec M. Fountoulakis Limitations of current proteomics technologies J. Chromatogr., A 2005 1077 1 1 18
    • (2005) J. Chromatogr., A , vol.1077 , Issue.1 , pp. 1-18
    • Garbis, S.1    Lubec, G.2    Fountoulakis, M.3
  • 20
    • 4744342353 scopus 로고    scopus 로고
    • Alternative bioseparation operations: Life beyond packed-bed chromatography
    • T. M. Przybycien N. S. Pujar L. M. Steele Alternative bioseparation operations: life beyond packed-bed chromatography Curr. Opin. Biotechnol. 2004 15 5 469 478
    • (2004) Curr. Opin. Biotechnol. , vol.15 , Issue.5 , pp. 469-478
    • Przybycien, T.M.1    Pujar, N.S.2    Steele, L.M.3
  • 21
    • 75849145266 scopus 로고    scopus 로고
    • Versatile ultrathin nanoporous silicon nitride membranes
    • I. Vlassiouk et al., Versatile ultrathin nanoporous silicon nitride membranes Proc. Natl. Acad. Sci. U. S. A. 2009 106 50 21039 21044
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , Issue.50 , pp. 21039-21044
    • Vlassiouk, I.1
  • 22
    • 67749133717 scopus 로고    scopus 로고
    • Single conical nanopores displaying pH-tunable rectifying characteristics. manipulating ionic transport with zwitterionic polymer brushes
    • B. Yameen et al., Single conical nanopores displaying pH-tunable rectifying characteristics. manipulating ionic transport with zwitterionic polymer brushes J. Am. Chem. Soc. 2009 131 6 2070 2071
    • (2009) J. Am. Chem. Soc. , vol.131 , Issue.6 , pp. 2070-2071
    • Yameen, B.1
  • 23
    • 23144448498 scopus 로고    scopus 로고
    • Fast DNA translocation through a solid-state nanopore
    • A. J. Storm et al., Fast DNA translocation through a solid-state nanopore Nano Lett. 2005 5 7 1193 1197
    • (2005) Nano Lett. , vol.5 , Issue.7 , pp. 1193-1197
    • Storm, A.J.1
  • 24
    • 79051468987 scopus 로고    scopus 로고
    • Driven polymer translocation through nanopores: Slow- vs. -fast dynamics
    • K. Luo et al., Driven polymer translocation through nanopores: Slow- vs. -fast dynamics EPL 2009 88 6 68006
    • (2009) EPL , vol.88 , Issue.6 , pp. 68006
    • Luo, K.1
  • 25
    • 1542276785 scopus 로고    scopus 로고
    • Protein diffusion in charged nanotubes: "on-Off" behavior of molecular transport
    • J. R. Ku P. Stroeve Protein diffusion in charged nanotubes: "On-Off" behavior of molecular transport Langmuir 2004 20 5 2030 2032
    • (2004) Langmuir , vol.20 , Issue.5 , pp. 2030-2032
    • Ku, J.R.1    Stroeve, P.2
  • 26
    • 0035928923 scopus 로고    scopus 로고
    • External control of ion transport in nanoporous membranes with surfaces modified with self-assembled monolayers
    • K. Y. Chun P. Stroeve External control of ion transport in nanoporous membranes with surfaces modified with self-assembled monolayers Langmuir 2001 17 17 5271 5275
    • (2001) Langmuir , vol.17 , Issue.17 , pp. 5271-5275
    • Chun, K.Y.1    Stroeve, P.2
  • 27
    • 77951683887 scopus 로고    scopus 로고
    • Frictional forces between strongly compressed, nonentangled polymer brushes: molecular dynamics simulations and scaling theory
    • A. Galuschko et al., Frictional Forces between Strongly Compressed, Nonentangled Polymer Brushes: Molecular Dynamics Simulations and Scaling Theory Langmuir 2010 26 9 6418 6429
    • (2010) Langmuir , vol.26 , Issue.9 , pp. 6418-6429
    • Galuschko, A.1
  • 28
    • 0027911305 scopus 로고
    • Structure of grafted polymeric brushes in solvents of varying quality - A molecular-dynamics study
    • G. S. Grest M. Murat Structure of grafted polymeric brushes in solvents of varying quality - a molecular-dynamics study Macromolecules 1993 26 12 3108 3117
    • (1993) Macromolecules , vol.26 , Issue.12 , pp. 3108-3117
    • Grest, G.S.1    Murat, M.2
  • 29
    • 0141495389 scopus 로고    scopus 로고
    • Friction between polymer brushes in good solvent conditions: Steady-state sliding versus transient behavior
    • T. Kreer K. Binder M. H. Muser Friction between polymer brushes in good solvent conditions: Steady-state sliding versus transient behavior Langmuir 2003 19 18 7551 7559
    • (2003) Langmuir , vol.19 , Issue.18 , pp. 7551-7559
    • Kreer, T.1    Binder, K.2    Muser, M.H.3
  • 30
    • 34548204923 scopus 로고    scopus 로고
    • Comparison of dissipative particle dynamics and Langevin thermostats for out-of-equilibrium simulations of polymeric systems
    • C. Pastorino et al., Comparison of dissipative particle dynamics and Langevin thermostats for out-of-equilibrium simulations of polymeric systems Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 2007 76 2 026706
    • (2007) Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. , vol.76 , Issue.2 , pp. 026706
    • Pastorino, C.1
  • 31
    • 36849103820 scopus 로고
    • Role of repulsive forces in determining equilibrium structure of simple liquids
    • J. D. Weeks D. Chandler H. C. Andersen Role of Repulsive Forces in Determining Equilibrium Structure of Simple Liquids J. Chem. Phys. 1971 54 12 5237 5247
    • (1971) J. Chem. Phys. , vol.54 , Issue.12 , pp. 5237-5247
    • Weeks, J.D.1    Chandler, D.2    Andersen, H.C.3
  • 32
    • 33846467115 scopus 로고    scopus 로고
    • Effect of water-wall interaction potential on the properties of nanoconfined water
    • P. Kumar et al., Effect of water-wall interaction potential on the properties of nanoconfined water Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 2007 75 1 Pt 1 011202
    • (2007) Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. , vol.75 , Issue.1 PART 1 , pp. 011202
    • Kumar, P.1
  • 33
    • 54749094671 scopus 로고    scopus 로고
    • The flow of colloids and polymers in channels simulated using non-equilibrium molecular dynamics
    • I. Snook P. Daivis T. Kairn The flow of colloids and polymers in channels simulated using non-equilibrium molecular dynamics J. Phys.: Condens. Matter 2008 20 40 404211
    • (2008) J. Phys.: Condens. Matter , vol.20 , Issue.40 , pp. 404211
    • Snook, I.1    Daivis, P.2    Kairn, T.3
  • 35
    • 0003705747 scopus 로고    scopus 로고
    • Cambridge University Press, Cambridge, UK, New York, NY, 2nd edn, xiii
    • D. C. Rapaport, The art of molecular dynamics simulation, Cambridge University Press, Cambridge, UK, New York, NY, 2nd edn, 2004, vol. xiii, p. 549
    • (2004) The Art of Molecular Dynamics Simulation , pp. 549
    • Rapaport, D.C.1
  • 36
    • 75649125647 scopus 로고    scopus 로고
    • Single molecule imaging of protein molecules in nanopores
    • C. B. Ma E. S. Yeung Single Molecule Imaging of Protein Molecules in Nanopores Anal. Chem. 2010 82 2 478 482
    • (2010) Anal. Chem. , vol.82 , Issue.2 , pp. 478-482
    • Ma, C.B.1    Yeung, E.S.2
  • 38
    • 0001569292 scopus 로고
    • Cutoff errors in the ewald summation formulas for point-charge systems
    • J. Kolafa J. W. Perram Cutoff Errors in the Ewald Summation Formulas for Point-Charge Systems Mol. Simul. 1992 9 5 351 368
    • (1992) Mol. Simul. , vol.9 , Issue.5 , pp. 351-368
    • Kolafa, J.1    Perram, J.W.2
  • 39
    • 57849117424 scopus 로고    scopus 로고
    • (PM)-M-3 algorithm for dipolar interactions
    • J. J. Cerda et al., (PM)-M-3 algorithm for dipolar interactions J. Chem. Phys. 2008 129 23 1 56
    • (2008) J. Chem. Phys. , vol.129 , Issue.23 , pp. 1-56
    • Cerda, J.J.1
  • 40
    • 22244433235 scopus 로고    scopus 로고
    • How to mesh up Ewald sums. I. A theoretical and numerical comparison of various particle mesh routines
    • M. Deserno C. Holm How to mesh up Ewald sums. I. A theoretical and numerical comparison of various particle mesh routines J. Chem. Phys. 1998 109 18 7678 7693
    • (1998) J. Chem. Phys. , vol.109 , Issue.18 , pp. 7678-7693
    • Deserno, M.1    Holm, C.2
  • 41
    • 0000091410 scopus 로고    scopus 로고
    • How to mesh up Ewald sums. II. An accurate error estimate for the particle-particle-particle-mesh algorithm
    • M. Deserno C. Holm How to mesh up Ewald sums. II. An accurate error estimate for the particle-particle-particle-mesh algorithm J. Chem. Phys. 1998 109 18 7694 7701
    • (1998) J. Chem. Phys. , vol.109 , Issue.18 , pp. 7694-7701
    • Deserno, M.1    Holm, C.2
  • 42
    • 33645981294 scopus 로고    scopus 로고
    • ESPResSo - An extensible simulation package for research on soft matter systems
    • H. J. Limbach et al., ESPResSo - an extensible simulation package for research on soft matter systems Comput. Phys. Commun. 2006 174 9 704 727
    • (2006) Comput. Phys. Commun. , vol.174 , Issue.9 , pp. 704-727
    • Limbach, H.J.1
  • 43
    • 84956259119 scopus 로고
    • Statistical-Mechanics of Dissipative Particle Dynamics
    • P. Espanol P. Warren Statistical-Mechanics of Dissipative Particle Dynamics Europhys. Lett. 1995 30 4 191 196
    • (1995) Europhys. Lett. , vol.30 , Issue.4 , pp. 191-196
    • Espanol, P.1    Warren, P.2
  • 44
    • 0346304855 scopus 로고    scopus 로고
    • Dissipative particle dynamics: A useful thermostat for equilibrium and nonequilibrium molecular dynamics simulations
    • 046702
    • T. Soddemann B. Dunweg K. Kremer Dissipative particle dynamics: A useful thermostat for equilibrium and nonequilibrium molecular dynamics simulations Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 2003 68 046702 1 8
    • (2003) Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. , vol.68 , pp. 1-8
    • Soddemann, T.1    Dunweg, B.2    Kremer, K.3
  • 46
    • 78649323399 scopus 로고    scopus 로고
    • Comparison of fouling characteristics in different pore-sized submerged ceramic membrane bioreactors
    • L. Jin S. L. Ong H. Y. Ng Comparison of fouling characteristics in different pore-sized submerged ceramic membrane bioreactors Water Res. 2010 44 20 5907 5918
    • (2010) Water Res. , vol.44 , Issue.20 , pp. 5907-5918
    • Jin, L.1    Ong, S.L.2    Ng, H.Y.3
  • 47
    • 0037062804 scopus 로고    scopus 로고
    • Protein transport in nanoporous membranes modified with self-assembled monolayers of functionalized thiols
    • K. Y. Chun P. Stroeve Protein transport in nanoporous membranes modified with self-assembled monolayers of functionalized thiols Langmuir 2002 18 12 4653 4658
    • (2002) Langmuir , vol.18 , Issue.12 , pp. 4653-4658
    • Chun, K.Y.1    Stroeve, P.2
  • 48
    • 68949181593 scopus 로고    scopus 로고
    • Thin alumina nanoporous membranes for similar size biomolecule separation
    • H. U. Osmanbeyoglu T. B. Hur H. K. Kim Thin alumina nanoporous membranes for similar size biomolecule separation J. Membr. Sci. 2009 343 1-2 1 6
    • (2009) J. Membr. Sci. , vol.343 , Issue.12 , pp. 1-6
    • Osmanbeyoglu, H.U.1    Hur, T.B.2    Kim, H.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.