메뉴 건너뛰기




Volumn 18, Issue 12, 2012, Pages 2457-2466

Compressed adjacency matrices: Untangling gene regulatory networks

Author keywords

adjacency matrix; gene regulation; Network; scale free

Indexed keywords

ADJACENCY MATRICES; DIRECTED NETWORK; DOMAIN EXPERTS; GENE REGULATORY NETWORKS; INTERACTION TECHNIQUES; NETWORK CHARACTERISTICS; NODE-LINK DIAGRAMS; SCALE-FREE; SCALE-FREE DISTRIBUTIONS; SPARSE NETWORK; STRUCTURAL CHARACTERISTICS; SUBNETWORKS; VISUALIZATION TECHNIQUE;

EID: 84867660739     PISSN: 10772626     EISSN: None     Source Type: Journal    
DOI: 10.1109/TVCG.2012.208     Document Type: Article
Times cited : (51)

References (43)
  • 3
    • 33947607198 scopus 로고    scopus 로고
    • Drawing power law graphs using a local/global decomposition
    • DOI 10.1007/s00453-006-0160-2
    • R. Andersen, F. Chung, and L. Lu. Drawing power law graphs using a local/global decomposition. Algorithmica, 47(4):379-397, 2007. (Pubitemid 46479909)
    • (2007) Algorithmica (New York) , vol.47 , Issue.4 , pp. 379-397
    • Andersen, R.1    Chung, F.2    Lu, L.3
  • 10
    • 33845647173 scopus 로고    scopus 로고
    • IPSEP-COLA: An incremental procedure for separation constraint layout of graphs
    • DOI 10.1109/TVCG.2006.156
    • T. Dwyer, Y. Koren, and K. Marriott. Ipsep-cola: An incremental procedure for separation constraint layout of graphs. IEEE Trans. Visualization and Computer Graphics, 12(5):821-828, 2006. (Pubitemid 44955609)
    • (2006) IEEE Transactions on Visualization and Computer Graphics , vol.12 , Issue.5 , pp. 821-828
    • Dwyer, T.1    Koren, Y.2    Marriott, K.3
  • 11
    • 0001070640 scopus 로고
    • A heuristic for graph drawing
    • P. Eades. A heuristic for graph drawing. Congressus Numerantium, 42:149-160, 1984.
    • (1984) Congressus Numerantium , vol.42 , pp. 149-160
    • Eades, P.1
  • 14
    • 16244398384 scopus 로고    scopus 로고
    • A comparison of the readability of graphs using node-link and matrix-based representations
    • Proceedings - IEEE Symposium on Information Visualization, INFO VIS 2004
    • M. Ghoniem, J.-D. Fekete, and P. Castagliola. A comparison of the readability of graphs using node-link and matrix-based representations. In IEEE Proc. Symposium on Information Visualization, pages 17-24, 2004. (Pubitemid 40449123)
    • (2004) Proceedings - IEEE Symposium on Information Visualization, INFO VIS , pp. 17-24
    • Ghoniem, M.1    Fekete, J.-D.2    Castagliola, P.3
  • 15
  • 16
    • 84255210720 scopus 로고    scopus 로고
    • Visualising errors in animal pedigree genotype data
    • M. Graham, J. Kennedy, T. Paterson, and A. Law. Visualising errors in animal pedigree genotype data. Computer Graphics Forum, 30(3):1011- 1020, 2011.
    • (2011) Computer Graphics Forum , vol.30 , Issue.3 , pp. 1011-1020
    • Graham, M.1    Kennedy, J.2    Paterson, T.3    Law, A.4
  • 20
    • 33845678910 scopus 로고    scopus 로고
    • MatrixExplorer: A Dual-representation system to explore social networks
    • DOI 10.1109/TVCG.2006.160
    • N. Henry and J.-D. Fekete. MatrixExplorer: a dual-representation system to explore social networks. IEEE Trans. Visualization and Computer Graphics, 12(5):677-684, 2006. (Pubitemid 44955591)
    • (2006) IEEE Transactions on Visualization and Computer Graphics , vol.12 , Issue.5 , pp. 677-684
    • Henry, N.1    Fekete, J.-D.2
  • 23
    • 33845640864 scopus 로고    scopus 로고
    • Hierarchical edge bundles: Visualization of adjacency relations in hierarchical data
    • DOI 10.1109/TVCG.2006.147
    • D. Holten. Hierarchical edge bundles: Visualization of adjacency relations in hierarchical data. IEEE Trans. Visualization and Computer Graphics, 12(5):741-748, 2006. (Pubitemid 44955599)
    • (2006) IEEE Transactions on Visualization and Computer Graphics , vol.12 , Issue.5 , pp. 741-748
    • Holten, D.1
  • 25
    • 80855140990 scopus 로고    scopus 로고
    • Developing and evaluating quilts for the depiction of large layered graphs
    • Juhee Bae and B. Watson. Developing and evaluating quilts for the depiction of large layered graphs. IEEE Trans. Visualization and Computer Graphics, 17(12):2268-2275, 2011.
    • (2011) IEEE Trans. Visualization and Computer Graphics , vol.17 , Issue.12 , pp. 2268-2275
    • Bae, J.1    Watson, B.2
  • 26
    • 39449097889 scopus 로고    scopus 로고
    • Techniques for clustering gene expression data
    • DOI 10.1016/j.compbiomed.2007.11.001, PII S0010482507001801
    • G. Kerr, H. Ruskin, M. Crane, and P. Doolan. Techniques for clustering gene expression data. Computers in Biology and Medicine, 38(3):283- 293, 2008. (Pubitemid 351273199)
    • (2008) Computers in Biology and Medicine , vol.38 , Issue.3 , pp. 283-293
    • Kerr, G.1    Ruskin, H.J.2    Crane, M.3    Doolan, P.4
  • 30
    • 0347126296 scopus 로고    scopus 로고
    • DBTBS: Database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
    • Y. Makita, M. Nakao, N. Ogasawara, and K. Nakai. DBTBS: Database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Research, 32(suppl 1):D75-D77, 2004. (Pubitemid 38081607)
    • (2004) Nucleic Acids Research , vol.32 , Issue.DATABASE ISS.
    • Makita, Y.1    Nakao, M.2    Ogasawara, N.3    Nakai, K.4
  • 32
    • 0015397231 scopus 로고
    • Problem decomposition and data reorganization by a clustering technique
    • W. McCormick, P. Schweitzer, and T. White. Problem decomposition and data reorganization by a clustering technique. Operations Research, 20(5):993-1009, 1972.
    • (1972) Operations Research , vol.20 , Issue.5 , pp. 993-1009
    • McCormick, W.1    Schweitzer, P.2    White, T.3
  • 38
  • 39
    • 84867660594 scopus 로고    scopus 로고
    • ImPrEd: An improved force-directed algorithm that prevents nodes from crossing edges
    • P. Simonetto, D. Archambault, D. Auber, and R. Bourqui. ImPrEd: An improved force-directed algorithm that prevents nodes from crossing edges. Computer Graphics Forum, 30(3):1071-1080, 2011.
    • (2011) Computer Graphics Forum , vol.30 , Issue.3 , pp. 1071-1080
    • Simonetto, P.1    Archambault, D.2    Auber, D.3    Bourqui, R.4
  • 43
    • 54749094011 scopus 로고    scopus 로고
    • Visualizing genome expression and regulatory network dynamics in genomic and metabolic context
    • M. Westenberg, S. van Hijum, O. Kuipers, and J. Roerdink. Visualizing genome expression and regulatory network dynamics in genomic and metabolic context. Computer Graphics Forum, 27(3):887-894, 2008.
    • (2008) Computer Graphics Forum , vol.27 , Issue.3 , pp. 887-894
    • Westenberg, M.1    Van Hijum, S.2    Kuipers, O.3    Roerdink, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.