Molecular epidemiology of Chikungunya virus: Mutation in E1 gene region

Journal of Virological Methods

Volumn 185, Issue 2, 2012, Pages 213-220

  Singh, Rishi K ^a   Tiwari, Sarika ^a   Mishra, Virendra K ^a   Tiwari, Ruchi ^a   Dhole, Tapan N ^a  

^a SANJAY GANDHI POSTGRADUATE INSTITUTE OF MEDICAL SCIENCES   (India)

Author keywords

Chikungunya virus; Glycoprotein; Phylogenetic analysis

Indexed keywords

GLYCOPROTEIN E1; IMMUNOGLOBULIN M ANTIBODY;

ADOLESCENT; ADULT; AMINO ACID SEQUENCE; ARTICLE; CELL CULTURE REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; CHIKUNGUNYA; CHIKUNGUNYA ALPHAVIRUS; CHILD; CLINICAL ARTICLE; ENZYME LINKED IMMUNOSORBENT ASSAY; FEMALE; GENE E1; GENE MUTATION; HUMAN; INDIA; INFANT; INTERMETHOD COMPARISON; MALE; MEMBRANE FUSION; MOLECULAR EPIDEMIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRESCHOOL CHILD; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SCHOOL CHILD; VIRUS GENE; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN;

ADOLESCENT; ADULT; ALPHAVIRUS INFECTIONS; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CELL LINE; CHIKUNGUNYA VIRUS; CHILD; CHILD, PRESCHOOL; CYTOPATHOGENIC EFFECT, VIRAL; ENZYME-LINKED IMMUNOSORBENT ASSAY; FEMALE; GENES, VIRAL; GENETIC VARIATION; HUMANS; INDIA; INFANT; MALE; MEMBRANE FUSION PROTEINS; MIDDLE AGED; MOLECULAR SEQUENCE DATA; MUTATION; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; VIRAL ENVELOPE PROTEINS; YOUNG ADULT;

EID: 84867593736     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2012.07.001     Document Type: Article

References (30)

1. Arankalle V.A., Shrivastava S., Cherian S., Gunjikar R.S., Walimbe A.M., Jadhav S.M., Sudeep A.B., Mishra A.C. Genetic divergence of Chikungunya viruses in India (1963-2006) with special reference to the 2005-2006 explosive epidemic. Journal of General Virology 2007, 88:1967-1976.
2. Carey D.E. Chikungunya and dengue: a case of mistaken identity. Journal of the History of Medicine and Allied Sciences 1971, 26:243-262.
3. Diallo M., Thonnon J., Traore-Lamizana M., Fontenille D. Vectors of Chikungunya virus in Senegal: current data and transmission cycles. American Journal of Tropical Medicine and Hygiene 1999, 60:281-286.
4. Johnston R.E., Peters C.J. Alpha viruses associated primarily with fever and polyarthritis. Field Virology 1996, 843-898. Lippincott-Raven Publishers, Philadelphia. B.N. Fields, D.M. Knipe, P.M. Howley (Eds.).
5. Lam S.K., Chua K.B., Hooi P.S., Rahimah M.A., Kumari S., Tharmaratnam M., Chuah S.K., Smith D.W., Sampson I.A. Chikungunya infection - an emerging disease in Malaysia. Southeast Asian Journal of Tropical Medicine and Public Health 2001, 32:447-451.
6. Laras K., Sukri N.C., Larasati R.P., Bangs M.J., Kosim R., Djauzi, Wandra T., Master J., Kosasih H., Hartati S., Beckett C., Sedyaningsih E.R., Beecham H.J., Corwin A.L. Tracking the re-emergence of epidemic Chikungunya virus in Indonesia. Transactions of the Royal Society of Tropical Medicine and Hygiene 2005, 99:128-141.
7. Lescar J., Roussel A., Wien M.W., Navaza J., Fuller S.D., Wengler G., Rey F.A. The Fusion glycoprotein shell of Semliki Forest virus: an icosahedral assembly primed for fusogenic activation at endosomal pH. Cell 2001, 105:137-148.
8. Mishra B., Ratho R.K. Chikungunya re-emergence: possible mechanisms. Lancet 2006, 368:918.
9. Muyembe-Tamfum J.J., Peyrefitte C.N., Yogolelo R., Mathina Basisya E., Koyange D., Pukuta E., Mashako M., Tolou H., Durand J.P. Epidemic of Chikungunya virus in 1999 and 200 in the Democratic Republic of the Congo. Meódecine tropicale: revue du Corps de santeó colonial (Mars) 2003, 63:637-638.
10. Pastorino B., Muyembe-Tamfum J.J., Bessaud M., Tock F., Tolou H., Durand J.P., Peyrefitte C.N. Epidemic resurgence of Chikungunya virus in democratic Republic of the Congo: identification of a new central African strain. Journal of Medical Virology 2004, 74:277-282.
11. Pialoux G., Gauzere B.A., Jaureguiberry S., Strobel M. Chikungunya, an epidemic arbovirosis. Lancet Infectious Diseases 2007, 7:319-327.
12. Pletnev S.V., Zhang W., Mukhopadhyay S., Fisher B.R., Hernandez R., Brown D.T., Baker T.S., Rossmann M.G., Kuhn R.J. Locations of carbohydrate sites on alphavirus glycoproteins show that E1 forms an icosahedral scaffold. Cell 2001, 105:127-136.
13. Porterfield J.H. Antigenic characteristics and classification of Togaviridae. The Togaviruses 1980, 13-46. Academic Press, New York. R.W. Schlesinger (Ed.).
14. Powers A.M., Brault A.C., Tesh R.B., Weaver S.C. Re-emergence of Chikungunya and O'nyong-nyong viruses: evidence for distinct geographical lineages and distant evolutionary relationships. Journal of General Virology 2000, 81:471-479.
15. Powers A.M., Logue C.H. Changing patterns of Chikungunya virus: re-emergence of a zoonotic arbovirus. Journal of General Virology 2007, 88:2363-2377.
16. Ravi V. Re-emergence of Chikungunya virus in India. Indian Journal of Medical Microbiology 2006, 24:83-84.
17. Robinson M.C. An epidemic of virus disease in Southern Province, Tanganyika Territory, in 1952-53. I. Clinical features. Transactions of the Royal Society of Tropical Medicine and Hygiene 1955, 49:28-32.
18. Ross R.W. The Newala epidemic. III. The virus: isolation, pathogenic properties and relationship to the epidemic. Journal of Hygiene 1956, 54:177-191.
19. Santhosh S.R., Dash P.K., Parida M.M., Khan M., Tiwari M., Lakshmana Rao P.V. Comparative full genome analysis revealed E1: A226V shift in 2007 Indian Chikungunya virus isolates. Virus Research 2008, 135:36-41.
20. Sarkar J.K., Chatterjee S.N., Chakravarty S.K. Haemorrhagic fever in Calcutta: Some epidemiological observations. Indian Journal of Medical Research 1964, 52:651-659.
21. Schuffenecker I., Iteman I., Michault A., Murri S., Frangeul L., Vaney M.C., Lavenir R., Pardigon N., Reynes J.M., Pettinelli F., Biscornet L., Diancourt L., Michel S., Duquerroy S., Guigon G., Frenkiel M.P., Brehin A.C., Cubito N., Despres P., Kunst F., Rey F.A., Zeller H., Brisse S. Genome microevolution of Chikungunya viruses causing the Indian Ocean outbreak. PLoS Medicine 2006, 3:e263.
22. Sourisseau M., Schilte C., Casartelli N., Trouillet C., Guivel-Benhassine F., Rudnicka D., Sol-Foulon N., Le Roux K., Prevost M.C., Fsihi H., Frenkiel M.P., Blanchet F., Afonso P.V., Ceccaldi P.E., Ozden S., Gessain A., Schuffenecker I., Verhasselt B., Zamborlini A., Saib A., Rey F.A., Arenzana-Seisdedos F., Despres P., Michault A., Albert M.L., Schwartz O. Characterization of reemerging Chikungunya virus. PLoS Pathogenesis 2007, 3:e89.
23. Staikowsky F., Le Roux K., Schuffenecker I., Laurent P., Grivard P., Develay A., Michault A. Retrospective survey of Chikungunya disease in Reunion Island hospital staff. Epidemiology and Infection 2008, 136:196-206.
24. Strauss J.H., Strauss E.G. The alphaviruses: gene expression, replication, and evolution. Microbiological Reviews 1994, 58:491-562.
25. Thaikruea L., Charearnsook O., Reanphumkarnkit S., Dissomboon P., Phonjan R., Ratchbud S., Kounsang Y., Buranapiyawong D. Chikungunya in Thailand: a re-emerging disease?. Southeast Asian Journal of Tropical Medicine and Public Health 1997, 28:359-364.
26. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22:4673-4680.
27. Tsetsarkin K.A., Vanlandingham D.L., McGee C.E., Higgs S. A single mutation in Chikungunya virus affects vector specificity and epidemic potential. PLoS Pathogenesis 2007, 3:e201.
28. Van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L., Carstens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R. Seventh report of the International Committee on Taxonomy of Viruses. Virus Taxonomy 2000, Academic Press, San Diego. R.B. Wickner (Ed.).
29. Yergolkar P.N., Tandale B.V., Arankalle V.A., Sathe P.S., Sudeep A.B., Gandhe S.S., Gokhle M.D., Jacob G.P., Hundekar S.L., Mishra A.C. Chikungunya outbreaks caused by African genotype, India. Emerging Infectious Diseases 2006, 12:1580-1583.
30. Zheng K., Li J., Zhang Q., Liang M., Li C., Lin M., Huang J., Li H., Xiang D., Wang N., Hong Y., Huang L., Li X., Pan D., Song W., Dai J., Guo B., Li D. Genetic analysis of Chikungunya viruses imported to mainland China in 2008. Virol Journal 2010, 7:8.