Development of oligonucleotide microarrays onto Si-based surfaces via thioether linkage mediated by UV irradiation

Bioconjugate Chemistry

Volumn 23, Issue 10, 2012, Pages 2121-2128

  Escorihuela, Jorge ^a   Bañuls, María José ^a   Puchades, Rosa ^a   Maquieira, Ángel ^a  

^a UNIVERSITAT POLITÈCNICA DE VALÈNCIA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI; IRRADIATION; MICROARRAYS; PROBES;

COVALENT IMMOBILIZATION; EPOXY; FUNCTIONALIZED; LIGHT RADIATION; MODIFIED OLIGONUCLEOTIDES; OLIGONUCLEOTIDE MICROARRAY; SI-BASED; SILICON SUBSTRATES; THIOETHER LINKAGES; UV IRRADIATION;

OLIGONUCLEOTIDES;

OLIGONUCLEOTIDE; SILICON; SULFIDE;

ARTICLE; CONTROLLED STUDY; CROSS LINKING; DNA HYBRIDIZATION; DNA STRAND; ESCHERICHIA COLI; IMMOBILIZATION; MICROARRAY ANALYSIS; NONHUMAN; QUANTUM YIELD; SINGLE NUCLEOTIDE POLYMORPHISM; ULTRAVIOLET IRRADIATION;

EID: 84867566930     PISSN: 10431802     EISSN: 15204812     Source Type: Journal    
DOI: 10.1021/bc300333a     Document Type: Article

References (42)

1. Dolatabadi, J. E. N., Mashinchian, O., Ayoubi, B., Jamali, A. A., Mobed, A., Losic, D., Omidi, Y., and de la Guardia, M. (2011) Optical and electrochemical DNA nanobiosensors Trends Anal. Chem. 30, 459-472
2. Sassolas, A., Leca-Bouvier, B. D., and Blum, L. J. (2008) DNA biosensors and microarrays Chem. Rev. 108, 109-139 (Pubitemid 351176406)
3. Lu, J., Getz, G., Miska, E. A., Alvarez-Saavedra, E., Lamb, J., Peck, D., Sweet-Cordero, A., Ebert, B. L., Mak, R. H., Ferrando, A. A., Downing, J. R., Jacks, T., Horvitz, H. R., and Golub, T. R. (2005) MicroRNA expression profiles classify human cancers Nature 435, 834-838 (Pubitemid 40839735)
4. Bratu, D. P., Cha, B.-J., Mhlanga, M. M., Kramer, F. R., and Tyagi, S. (2003) Visualizing the distribution and transport of mRNAs in living cells Proc. Natl. Acad. Sci. U.S.A. 100, 13308-13313 (Pubitemid 37444738)
5. Arora, K., Prabhakar, N., Chand, S., and Malhotra, B. D. (2007) Escherichia coli genosensor based on polyaniline Anal. Chem. 79, 6152-6158 (Pubitemid 47282325)
6. van't Veer, L. J., Dai, H. Y., van de Vijver, M. J., He, Y. D. D., Hart, A. A. M., Mao, M., Peterse, H. L., van der Kooy, K., Marton, M. J., Witteveen, A. T., Schreiber, G. J., Kerkhoven, R. M., Roberts, C., Linsley, P. S., Bernards, R., and Friend, S. H. (2002) Gene expression profiling predicts clinical outcome of breast cancer Nature 415, 530-536 (Pubitemid 34130608)
7. Kanan, M. W., Rozenman, M. M., Sakurai, K., Snyder, T. M., and Liu, D. R. (2004) Reaction discovery enabled by DNA-templated synthesis and in vitro selection Nature 431, 545-549 (Pubitemid 39336330)
8. Hopwood, A. J., Hurth, C., Yang, J., Cai, Z., Moran, N., Lee-Edghill, J. G., Nordquist, A., Lenigk, R., Estes, M. D., Haley, J. P., McAlister, C. R., Chen, X., Brooks, C., Smith, S., Elliott, K., Koumi, P., Zenhausern, F., and Tully, G. (2010) Integrated microfluidic system for rapid forensic DNA analysis: sample collection to DNA profile Anal. Chem. 82, 6991-6999
9. Rasooly, A. and Herold, K. E. (2008) Nano and Microsensors for Chemical and Biological Terrorism Surveillance (Tok, J. B. H., Ed.) pp 116-165, Chapter 6, Royal Society of Chemistry, Cambridge.
10. Lovrinovic, M. and Niemeyer, C. M. (2005) DNA microarrays as decoding tools in combinatorial chemistry and chemical biology Angew. Chem., Int. Ed. 44, 3179-3183 (Pubitemid 40778336)
11. Pasquarelli, A. (2008) Biochips: technologies and applications Mater. Sci. Eng., C 28, 495-508 (Pubitemid 351417803)
12. Lenigk, R., Carles, M., Ip, N. Y., and Sucher, N. J. (2001) Surface characterization of a silicon-chip-based DNA microarray Langmuir 17, 2497-2501 (Pubitemid 35330128)
13. Du, Q., Larsson, O., Swerdlow, H., and Liang, Z. (2006) DNA immobilization: silanized nucleic acids and nanoprinting Top. Curr. Chem. 261, 45-61 (Pubitemid 44420787)
14. Krupke, R., Malik, S., Weber, H. B., and Hampe, O. (2002) Patterning and visualizing self-assembled monolayers with low-energy electrons Nano Lett. 2, 1161-1164 (Pubitemid 135706487)
15. Plueddemann, E. P. (1991) Silane Coupling Agents, Springer, New York.
16. Preininger, C., Sauer, U., Dayteg, J., and Pichler, R. (2005) Optimizing processing parameters for signal enhancement of oligonucleotide and protein arrays on ARChip epoxy Bioelectrochemistry 67, 155-162 (Pubitemid 41191211)
17. Böcking, T., Kilian, K. A., Gaus, K., and Gooding, J. J. (2006) Single-step DNA immobilization on antifouling self assembled monolayers covalently bound to silicon (111) Langmuir 22, 3494-3496 (Pubitemid 43672516)
18. Mahajan, S., Sethi, D., Seth, S., Kumar, A., Kumar, P., and Gupta, K. C. (2009) Construction of oligonucleotide microarrays (biochips) via thioether linkage for the detection of bacterial meningitis Bioconjugate Chem. 20, 1703-1710
19. Patnaik, S., Dash, S. K., Sethi, D., Kumar, A., Gupta, K. C., and Kumar, P. (2012) Engineered polymer-supported synthesis of 3′-carboxyalkyl- modified oligonucleotides and their applications in the construction of biochips for diagnosis of the diseases Bioconjugate Chem. 23, 664-670
20. Rothemund, P. W. K. (2006) Folding DNA to create nanoscale shapes and patterns Nature 440, 297-302
21. Hoyle, C. E., Loweb, A. B., and Bowman, C. N. (2010) Thiol-click chemistry: a multifaceted toolbox for small molecule and polymer synthesis Chem. Soc. Rev. 39, 1355-1387
22. Escorihuela, J., Bañuls, M. J., Puchades, R., and Maquieira, A. (2012) DNA microarrays on silicon surfaces through thiol-ene chemistry Chem. Commun. 48, 2116-2118
23. Mira, D., Llorente, R., Morais, S., Puchades, R., Maquieira, A., and Marti, J. (2004) High throughput screening of surface-enhanced fluorescence on industrial standard digital recording media Proc. SPIE 5617, 364-373 (Pubitemid 40565817)
24. Hermanson, G. T. (1996) Bioconjugate Techniques, Academic Press, San Diego, CA.
25. Tajc, S. G., Tolbert, B. S., Basavappa, R., and Miller, B. L. (2004) Direct determination of thiol pKa by isothermal titration microcalorimetry J. Am. Chem. Soc. 126, 10508-10509 (Pubitemid 39129131)
26. Del Campo, A. and Bruce, I. J. (2005) Immobilisation of DNA on Chips I (Wittmann, C., Ed) pp 86-88, Vol. 260, Springer-Verlag, Berlin.
27. Solomun, T., Mix, R., and Sturm, H. (2010) Immobilization of silanized DNA on glass: influence of the silane tether on the DNA hybridization ACS Appl. Mater. Interfaces 2, 2171-2174
28. Chrisey, L. A., Lee, G. U., and O'Ferrall, E. C. (1996) Covalent attachment of synthetic DNA to self-assembled monolayer films Nucleic Acids Res. 24, 3031-3039 (Pubitemid 26289596)
29. Lee, G. U., Chrisey, L. A., O'Ferrall, C. E., Pilloff, D. E., Turner, N. H., and Colton, R. J. (1996) Chemically- specific probes for the atomic force microscope Isr. J. Chem. 36, 81-87 (Pubitemid 126337581)
30. Lamture, J. B., Beattie, K. L., Burke, B. E., Eggers, M. D., Ehrlich, D. J., Fowler, R., Hollis, M. A., Kosicki, B. B., Reich, R. K., and Smith, S. R. (1994) Direct detection of nucleic acid hybridization on the surface of a charge coupled device Nucleic Acids Res. 22, 2121-2125 (Pubitemid 24192914)
31. Vong, T. H., Maat, J., ter van Beek, T. A., van Lagen, B., Giesbers, M., van Hest, J. C. M., and Zuilhof, H. (2009) Site-specific immobilization of DNA in glass microchannels via photolithography Langmuir 25, 13952-13958
32. Ham, H. O., Liu, Z., Lau, K. H. A., and Messersmith, P. B. (2011) Facile DNA immobilization on surfaces through a catecholamine polymer Angew. Chem., Int. Ed. 50, 732-736
33. Caipa Campos, M. A., Paulusse, J. M. J., and Zuilhof, H. (2010) Functional monolayers on oxide-free silicon surfaces via thiol-ene click chemistry Chem. Commun. 46, 5512-5214
34. Wong, A. K Y. and Krull, U. J. (2005) Surface characterization of 3-glycidoxypropyltrimethoxysilane films on silicon-based substrates Anal. Bioanal. Chem. 383, 187-200 (Pubitemid 41442910)
35. Tinland, B., Pluen, A., Sturm, J., and Weill, G. (1997) Persistence length of single-stranded DNA Macromolecules 30, 5763-5765 (Pubitemid 127592220)
36. Pirrung, M. C. (2002) How to make a DNA chip Angew. Chem., Int. Ed. 41, 1276-1289 (Pubitemid 34437410)
37. Twyman, R. M. (2004) SNP discovery and typing technologies for pharmacogenomics Curr. Top. Med. Chem. 4, 1421-1429
38. Syvanen, A. C. (2001) Accessing genetic variation: genotyping single nucleotide polymorphisms Nat. Rev. Genet. 2, 930-942
39. Shchepinov, M. S., Case-Green, S. C., and Southern, E. M. (1997) Steric factors influencing hybridisation of nucleic acids to oligonucleotides arrays Nucleic Acids Res. 25, 1155-1161 (Pubitemid 27303206)
40. Lao, A. I. K., Su, X., and Aung, K. M. M. (2009) SPR study of DNA hybridization with DNA and PNA probes under stringent conditions Biosens. Bioelectron. 24, 1717-1722
41. Morais, S., Marco-Molés, R., Puchades, R., and Maquieira, A. (2011) Oxygen plasma treated interactive polycarbonate DNA microarraying platform Bioconjugate Chem. 22, 2573-2580
42. Clarke, S. C. (2001) Diarrhoeagenic Escherichia coli -an emerging problem? Diagn. Microbiol. Infect. Dis. 41, 93-98 (Pubitemid 34031874)