Quantitative trait loci associated with functional stay-green SNU-SG1 in rice

Molecules and Cells

Volumn 24, Issue 1, 2007, Pages 83-94

  Yoo, Soo Cheul ^a   Cho, Sung Hwan ^a   Zhang, Haitao ^a   Paik, Hyo Chung ^a   Lee, Chung Hee ^a   Li, Jinjie ^a   Yoo, Jeong Hoon ^a   Lee, Byun Woo ^a   Koh, Hee Jong ^a   Seo, Hak Soo ^a   Paek, Nam Chon ^a  

^a Seoul National University   (South Korea)

Author keywords

Epistasis; F2 population; Functional stay green; QTL mapping; Recombinant inbred lines; Rice; Selective genotyping; SNU SG1

Indexed keywords

CHLOROPHYLL; DNA MARKER;

ARTICLE; CHLOROPHYLL CONTENT; CHROMOSOME 7; CHROMOSOME 9; CONTROLLED STUDY; CROP IMPROVEMENT; CULTIVAR; GENE LOCUS; GENETIC EPISTASIS; GENETIC LINKAGE; GENETIC VARIABILITY; GENOTYPE; GRAIN YIELD; LINKAGE ANALYSIS; NONHUMAN; PHOTOSYNTHESIS; PLANT BREEDING; QUANTITATIVE TRAIT LOCUS; RICE;

CHLOROPHYLL; CHROMOSOME MAPPING; ORYZA SATIVA; PHOTOSYNTHESIS; PLANT LEAVES; QUANTITATIVE TRAIT LOCI;

EMBRYOPHYTA; JAPONICA;

EID: 35048855476     PISSN: 10168478     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (48)

1. Abdelkhalik, A. F., Shishido, R., Nomura, K., and Ikehashi, H. (2005) QTL-based analysis of leaf senescence in an indica/japonica hybrid in rice (Oryza sativa L.). Theor. Appl. Genet. 110, 1226-1235.
2. Armstead, I., Donnison,, I., Aubry, S., Harper, J., Hortensteiner, S., et al. (2007) Cross-species identification of Mendel's I locus. Science 315, 73.
3. Bolanos, J. and Edmeades, G. O. (1996) The importance of the anthesis-silking interval in breeding for drought tolerance in tropical maize. Field Crop Res. 48, 65-80.
4. Borrell, A. K., Hammer, G. L., and Henzell, R. G. (2000) Does maintaining the green leaf area in sorghum improve yield under drought? II. Dry matter production and yield. Crop Sci. 40, 1037-1048.
5. Cha, K. W., Lee, Y. J., Koh, H. J., Lee, B. M., Nam, Y. W., et al. (2002) Isolation, characterization, and mapping of the stay green mutant in rice. Theor. Appl. Genet. 104, 526-532.
6. Darvasi, A. (1997) The effect of selective genotyping on QTL mapping accuracy. Mamm. Genome. 8, 67-68.
7. Darvasi, A, and Soller, M. (1992) Selective genotyping for determination of linkage between a marker locus and a quantitative trait locus. Theor. Appl. Genet. 85, 353-359.
8. Fang, Z., Bouwkamp, J. C., and Solomos, T. (1998) Chlorophyllase activities and chlorophyll degradation during leaf senescence in the non-yellowing mutant and the wild-type of Phaseolus vulgaris L. J. Exp. Bot. 49, 503-510.
9. Fukushima, E., Arata, Y., Endo, T., Sonnewald, U., and Sato, F. (2001) Improved salt tolerance of transgenic tobacco expressing apoplastic yeast-derived invertase. Plant Cell Phsiol. 42, 245-249.
10. Gao, Y. M., Zhu, J., Song, Y. S., He, C. X., Shi, C. H., et al. (2004) Analysis of digenic epistatic effects and QE interaction effects QTL controlling grain weight in rice. J. Zhejiang Univ. 5, 371-377.
11. Gentinetta, E., Ceppi, D., Lepori, C., Perico, G., Motto, M., et al. (1986) A major gene for delayed senescence in maize. Pattern of photosynthates accumulation and inheritance. Plant Breed. 97, 193-203.
12. Genty, B., Briantais, J. M., and Baker, N. R. (1989) The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence. Biochim. Biophys. Acta 990, 87-92.
13. Harris, K., Subudhi, P., Borrell, A., Jordan, D., Rosenow, D., et al. (2007) Sorghum stay-green QTL individually reduce post-flowering drought-induced leaf senescence. J. Exp. Bot. 58, JXB Advanced Online Access, doi: 10.1093/jxb/er1225.
14. Ishimaru, K., Yano, M., Aoki, N., Ono, K, Hirose, T., et al. (2001) Toward the mapping of physiological and agronomic characters on a rice function map: QTL analysis and comparison between QTLs and expressed sequence tags. Theor. Appl. Genet. 102, 793-800.
15. Jiang, G. H., He, Y. Q., Xu, C. G., Li, X. H., and Zhang, Q. (2004) The genetic basis of stay-green in rice analyzed in a population of doubled haploid lines derived from an indica by japonica cross. Theor. Appl. Genet. 108, 688-698.
16. Kooten, O. V. and Snel, J. F. H. (1990) The use of chlorophyll fluorescence nomenclature in plant stress physiology. Photosynth. Res. 25, 147-150, 1990.
17. Kosambi, D. D. (1994) The estimation of map distances from recombination values. Ann. Eugen. 12, 172-175.
18. Lander, E. S. and Botstein, D. (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121, 185-199.
19. Lander, E. S., Green, P., Abrahamson, J., Barlow, A., Daly, M. J., et al. (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1, 174-181.
20. Larcher, W. (2003) Plants under stress; in Physiological Plant Ecology, Ecophysiology and Stress Physiology of Functional Groups, 4th ed., pp. 345-450, Springer, Berlin.
21. Lee, S. Y., Ahn, J. H., Cha, Y. S., Yun, D. W., Lee, M. C., et al. (2006) Mapping of quantitative trait loci for salt tolerance at the seedling stage in rice. Mol. Cells 21, 192-196.
22. Li, Z., Pinson, S. R., Paterson, A. H., Park, W. D., and Stansel, J. W. (1997) Genetics of hybrid sterility and hybrid breakdown in an intersubspecific rice (Oryza sativa L.) population. Genetics 145, 1139-1148.
23. Lincoln, S. E., Daly, M. J., and Lander, E. S. (1993) Constructing genetic linkage maps with MAPMAKER/EXP version 3.0. A tutorial and reference manual, 3rd ed., Technical Report, Whitehead Institute for Biomedical Research.
24. Luquez, V., M., Sasal, Y., Medrano, M., Martin, M. I., Mujica, M., et al. (2006) Quantitative trait loci analysis of leaf and plant longevity in Arabidopsis thaliana. J. Exp. Bot. 57, 1363-1372.
25. Mae, T. (1997) Physiological nitrogen efficiency in rice: Nitrogen utilization, photosynthesis, and yield potential. Plant Soil 196, 201-210.
26. Murray, M. G. and Thompson, W. F. (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8, 4321-4325.
27. Nelson, J. C. (1997) QGENE: software for marker-based genomics analysis and breeding. Mol. Breed 3, 239-245.
28. Park, J. H. and Lee, B. W. (2003) Photosynthetic characteristics of rice cultivars with depending on leaf senescence during grain filling. Korean J. Crop Sci. 48, 216-223.
29. Pierce, R. O., Knowles, P. F., and Phillips, D. A. (1984) Inheritance of delayed leaf senescence in soybean. Crop Sci. 24, 515-518.
30. Rampino, P., Spano, G., Pataleo, S., Mita, G., Napier, J. A., et al. (2006) Molecular analysis of a durum wheat 'stay green' mutant: expression pattern of photosynthesis-related genes. J. Cereal Sci. 43, 160-168.
31. Rosenow, D. T., Quisenberry, J. E., Wendt, C. W., and Clark, L. E. (1983) Drought-tolerant sorghum and cotton germplasm. Agric. Water Manage 7, 207-222.
32. Sanchez, A. C., Subudhi, P. K., Rosenow, D. T., and Nguyen, H. T. (2002) Mapping QTLs associated with drought resistance in sorghum (Sorghum bicolor L. Moench). Plant Mol. Biol. 48, 713-726.
33. Schittenhelm, S., Menge-Hartmann, U. and Oldenburg, E. (2004) Photosynthesis, carbohydrate metabolism, and yield of phytochrome-B-overexpressing potatoes under different light regimes. Crop Sci. 44, 131-143.
34. Spano, G., Di Fonzo, N., Perrotta, C., Platani, C., Ronga, G., et al. (2003) Physiological characterization of 'stay green' mutants in durum wheat. J. Exp. Bot. 54, 3415-1420.
35. Tan, Y. F., Xing, Y. Z., Li, J. X., Yu, S. B., Xu, C. G., et al. (2000) Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid. Theor. Appl. Genet. 101, 823-829.
36. Temnykh, S., Declerck, G., Luashova, A., Lipovich, L., Cartinhour, S., et al. (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11, 1441-1452.
37. Temnykh, S., Park, W. D., Ayres, N., Cartihour, S., Hauck, N., et al. (2000) Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 100, 697-712.
38. Teng, S., Qian, Q., Zeng, D., Kunihiro, Y., Fujimoto, K., et al. (2004) QTL analysis of leaf photosynthetic rate and related physiological traits in rice (Oryza sativa L.). Euphytica 135, 1-7.
39. Thomas, H. (1987) Sid: a Mendelian locus controlling thylakoid membrane disassembly in senescing leaves of Festuca pratensis. Theor. Appl. Genet. 99, 92-99.
40. Thomas, H. (1997) Introgression, tagging and expression of a leaf senescence gene in Festalolium. New Phytol. 137, 29-34.
41. Thomas, H. and Howarth, C. J. (2000) Five ways to stay green. J. Exp. Bot. 51, 329-337.
42. Thomas, H. and Stoddart, J. L. (1975) Separation of chlorophyll degradation from other senescence processes in leaves of a mutant genotype of meadow fescue (Festuca pratensis L.). Plant Physiol. 56, 438-441.
43. Walulu, R. S., Rosenow, D. T., Wester, D. B., and Nguyen, H. T. (1994) Inheritance of the stay-green trait in sorghum. Crop Sci. 34, 970-972.
44. Wang, D. L., Zhu, J., Li, Z. K., and Paterson, A. H. (1999) User manual for QTL. Mapper version 1.0. 1-57.
45. Xu, W., Subudhi, P. K., Crasta, O. R., Rosenow, D. T., Mullet J. E., et al. (2000) Molecular mapping of QTLs conferring staygreen in grain sorghum (Sorghum bicolor L. Moench). Genome 43, 461-469.
46. Yamaya, T., Obara, M., Nakajima, H., Sasaki, S., Hayakawa, T., et al. (2002) Genetic manipulation and quantitative-trait loci mapping for nitrogen recycling in rice. J. Exp. Bot. 53, 917-925.
47. Yanagihara, S., McCouch, S. R., Ishikawa, K., Ogi, Y., Maruyama, K., et al. (1995) Molecular analysis of the inheritance of the S-5 locus, conferring wide compatibility in indica/japonica hybrids of rice (Oryza sativa L.). Theor. Appl. Genet. 90, 182-188.
48. Yue, B., Xue, W. Y., Luo, L. J., and Xing, Y. Z. (2006) QTL analysis for flag leaf characteristics and their relationships with yield and yield traits in rice. Yi Chuan Xue Bao 33, 824-832.