A transposable element insertion within ZmGE2 gene is associated with increase in embryo to endosperm ratio in maize

Theoretical and Applied Genetics

Volumn 125, Issue 7, 2012, Pages 1463-1471

  Zhang, Pan ^a   Allen, William B ^b   Nagasawa, Nobuhiro ^c   Ching, Ada S ^c   Heppard, Elmer P ^c   Li, Hui ^a   Hao, Xiaomin ^a   Li, Xiaowei ^a   Yang, Xiaohong ^a   Yan, Jianbing ^d   Nagato, Yasuo ^e   Sakai, Hajime ^c   Shen, Bo ^b   Li, Jiansheng ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b PIONEER HI BRED INTERNATIONAL INC   (United States)

^c DUPONT COMPANY   (United States)

^d HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^e UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AGRONOMY; CHROMOSOMES; GENETIC ENGINEERING;

ASSOCIATION MAPPING; EXPRESSION PATTERNS; GENETIC REGULATION; MAIZE KERNEL COMPOSITION; MOLECULAR BREEDING; TRANSGENIC APPROACHES; TRANSPOSABLE ELEMENTS; UNTRANSLATED REGIONS;

GENE EXPRESSION;

ZEA MAYS;

EID: 84867464496     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-012-1926-3     Document Type: Article

References (36)

1. Adamski NM, Anastasiou E, Eriksson S, O'Neill CM, Lenhard M (2009) Local maternal control of seed size by KLUH/CYP78A5-dependent growth signaling. Proc Natl Acad Sci USA 106: 20115-20120.
2. Anastasiou E, Kenz S, Gerstung M, MacLean D, Timmer J et al (2007) Control of plant organ size by KLUH/CYP78A5-dependent intercellular signaling. Dev Cell 13: 843-856.
3. Bakb S, Beisson F, Bishop G, Hamberger B, Höfer R et al (2011) Cytochromes P450. The Arabidopsis Book 9: e0144. doi: 10. 1199/tab. 0144.
4. Bradbury PJ, Zhang ZW, Kroon DE, Casstevens TM, Ramdoss Y et al (2007) TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23(19): 2633-2635.
5. Cahoon RE, Heppard EP, Nagasawa N and Sakai H (2003) Alteration of embryo/endosperm size during seed development. United States Patent Application Publication No. US2003/0126645 A1.
6. Ching A, Caldwell KS, Jung M, Dolan M, Smith OS et al (2002) SNP frequency, haplotype structure and linkage disequilibrium in elite maize lines. BMC Genet 3: 19.
7. De Rijk P, Wuyts J, De Wachter R (2003) RnaViz 2: an improved representation of RNA secondary structure. Bioinformatics 19: 299-300.
8. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acid Res 32(5): 1792-1797.
9. Felsenstein J (1989) PHYLIP-phylogeny inference package (version 3. 2). Cladistics 5: 164-166.
10. Gao YF, Zhang P, Hao XM, Yan JB, Li JS (2011) A rapid DNA extraction method for large maize populations. Journal of China Agricultural University 16(6): 32-36.
11. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
12. Imaishi H, Matsuo S, Swai E, Ohkawa H (2000) CYP78A1 preferentially expressed in developing inflorescences of Zea mays encoded a cytochrome P450-dependent lauric acid 12-monooxygenase. Biosci Biotechnol Biochem 64: 1696-1701.
13. Ito T, Meyerowitz EM (2000) Overexpression of a gene encoding a cytochrome P450, CYP78A9, induces large and seedless fruit in Arabidopsis. Plant Cell 12: 1541-1550.
14. Kai K, Hashidzume H, Yoshimura K, Suzuki H, Sakurai N et al (2009) Metabolomics for the characterization of cytochromes P450-dependent fatty acid hydroxylation reactions in Arabidopsis. Plant Biotechnol 26: 175-182.
15. s gene controlling the super-giant embryo character in rice (Oryza sativa L.). Theor Appl Genet 93: 257-261.
16. Kohany O, Gentles AJ, Hankus L, Jurka J (2006) Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics 7: 474.
17. Kondou Y, Nakazawa M, Kawashima M, Ichikawa T, Yoshizumi T et al (2008) RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth. Plant Physiol 147: 1924-1935.
18. Lambert RJ (2001) High-oil corn hybrids. In: Hallau AR (ed) Special corn. E. CRC Press Inc, Boca Raton, pp 131-153.
19. Lambert RJ, Alexander DE, Mejaya IJ (2004) Single kernel selection for increased grain oil in maize synthetics and high-oil hybrid development. Plant Breed Rev 24: 153-175.
20. -ΔΔCT method. Methods 25: 402-408.
21. Moose SP, Dudley JW, Rocheford TR (2004) Maize selection passes the century mark: a unique resource for 21st century genomics. Trends Plant Sci 9(7): 358-364.
22. Nelson D (2006) Plant cytochrome P450 s from moss to poplar. Phytochem Rev 5: 193-204.
23. t) in rice (Oryza sativa L.). Genes & Genomics 31: 277-282.
24. Reuter JS, Mathews DH (2010) RNA structure: software for RNA secondary structure prediction and analysis. BMC Bioinformatics 11: 129.
25. Satoh H, Omura T (1981) New endosperm mutations induced by chemical mutagen in rice. Japanese J. Breeding 31: 316-326.
26. Schnable PS, Ware D, Fulton RS, Stein JC, Wei F et al (2009) The B73 maize genome: complexity, diversity and dynamics. Science 326: 1112-1115.
27. Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8: 272-285.
28. Slotkin RK, Freeling M, Lisch D (2005) Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nat Genet 37: 641-644.
29. Song TM, Chen SJ (2004) Long term selection for oil concentration in five maize populations. Maydica 49: 9-14.
30. Tamura K, Peterson D, Peterson N, Stecher G, Nei M et al (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
31. Val DL, Schwartz SH, Kerns MR, Deikman J (2009) Development of a high oil trait for maize. In: Kriz AL, Larkins BA (eds) Molecular genetic approaches to maize improvement. Springer, Berlin, pp 303-323.
32. Wang JW, Schwab R, Czech B, Mica E, Weigel D (2008) Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell 20: 1231-1243.
33. Yang XH, Yan JB, Shah T, Warburton ML, Li Q et al (2010) Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection. Theor Appl Genet 121(3): 417-431.
34. Yang XH, Ma HL, Zhang P, Yan JB, Guo YQ et al (2012) Characterization of QTL for oil content in maize kernel. Theor Appl Genet. doi: 10. 1007/s00122-012-1903-x.
35. Yu JM, Pressoir G, Briggs WH, Bi IV, Yamasaki M et al (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38(2): 203-208.
36. Zheng PZ, Allen WB, Roesler K, Williams ME, Zhang SR et al (2008) A phenylalanine in DGAT is a key determinant of oil content and composition in maize. Nat Genet 40: 367-372.