TRIP Database 2.0: A Manually Curated Information Hub for Accessing TRP Channel Interaction Network

PLoS ONE

Volumn 7, Issue 10, 2012, Pages

  Shin, Young Cheul ^a   Shin, Soo Yong ^b   Chun, Jung Nyeo ^a,c   Cho, Hyeon Sung ^a,d   Lim, Jin Muk ^c   Kim, Hong Gee ^c   So, Insuk ^a,c   Kwon, Dongseop ^e   Jeon, Ju Hong ^a,c  

^a Seoul National University College of Medicine   (South Korea)

^b University of Ulsan College of Medicine   (South Korea)

^c Seoul National University   (South Korea)

^d Electronics and Telecommunications Research Institute (ETRI)   (South Korea)

^e Myong Ji University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSIENT RECEPTOR POTENTIAL CHANNEL;

ACCESS TO INFORMATION; ARTICLE; COMPUTER INTERFACE; INFORMATION DISSEMINATION; INFORMATION RETRIEVAL; LEARNING; ONLINE SYSTEM; PROTEIN DATABASE; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION;

COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; INFORMATION DISSEMINATION; INTERNET; PROTEIN INTERACTION MAPS; SOFTWARE; TRANSIENT RECEPTOR POTENTIAL CHANNELS; USER-COMPUTER INTERFACE;

EID: 84867414333     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0047165     Document Type: Article

References (22)

1. Ramsey IS, Delling M, Clapham DE, (2006) An introduction to TRP channels. Annu Rev Physiol 68: 619-647.
2. Nilius B, Owsianik G, (2011) The transient receptor potential family of ion channels. Genome Biol 12: 218.
3. Montell C, (2005) The TRP superfamily of cation channels. Sci STKE 2005: re3.
4. Venkatachalam K, Montell C, (2007) TRP channels. Annu Rev Biochem 76: 387-417.
5. Wu LJ, Sweet TB, Clapham DE, (2010) International Union of Basic and Clinical Pharmacology. LXXVI. Current progress in the mammalian TRP ion channel family. Pharmacol Rev 62: 381-404.
6. Nilius B, Owsianik G, Voets T, Peters JA, (2007) Transient receptor potential cation channels in disease. Physiol Rev 87: 165-217.
7. Nilius B, (2007) TRP channels in disease. Biochim Biophys Acta 1772: 805-812.
8. Nilius B, Owsianik G, (2010) Transient receptor potential channelopathies. Pflugers Arch 460: 437-450.
9. Desai BN, Clapham DE, (2005) TRP channels and mice deficient in TRP channels. Pflugers Arch 451: 11-18.
10. Freichel M, Flockerzi V, (2007) Biological functions of TRPs unravelled by spontaneous mutations and transgenic animals. Biochem Soc Trans 35: 120-123.
11. Moran MM, McAlexander MA, Biro T, Szallasi A, (2011) Transient receptor potential channels as therapeutic targets. Nat Rev Drug Discov 10: 601-620.
12. van de Graaf SF, Hoenderop JG, Bindels RJ, (2006) Regulation of TRPV5 and TRPV6 by associated proteins. Am J Physiol Renal Physiol 290: F1295-1302.
13. Kiselyov K, Shin DM, Kim JY, Yuan JP, Muallem S (2007) TRPC channels: interacting proteins. Handb Exp Pharmacol: 559-574.
14. Barabasi AL, Gulbahce N, Loscalzo J, (2011) Network medicine: a network-based approach to human disease. Nat Rev Genet 12: 56-68.
15. Vidal M, Cusick ME, Barabasi AL, (2011) Interactome networks and human disease. Cell 144: 986-998.
16. Shin YC, Shin SY, So I, Kwon D, Jeon JH, (2011) TRIP Database: a manually curated database of protein-protein interactions for mammalian TRP channels. Nucleic Acids Res 39: D356-361.
17. Goto N, Prins P, Nakao M, Bonnal R, Aerts J, et al. (2010) BioRuby: bioinformatics software for the Ruby programming language. Bioinformatics 26: 2617-2619.
18. Barabasi AL, Oltvai ZN, (2004) Network biology: understanding the cell's functional organization. Nat Rev Genet 5: 101-113.
19. Hopkins AL, (2008) Network pharmacology: the next paradigm in drug discovery. Nat Chem Biol 4: 682-690.
20. Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T, (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27: 431-432.
21. Kim S, Kwon D, Shin SY, Wilbur WJ, (2012) PIE the search: searching PubMed literature for protein interaction information. Bioinformatics 28: 597-598.
22. Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, et al. (2011) PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods 8: 528-529.