Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments

Molecular Genetics and Genomics

Volumn 287, Issue 10, 2012, Pages 819-835

  Matsuda, Shuichi ^a   Funabiki, Atsushi ^a   Furukawa, Kaoru ^a   Komori, Nozomi ^a   Koike, Masanori ^a   Tokuji, Yoshihiko ^a   Takamure, Itsuro ^b   Kato, Kiyoaki ^a  

^a OBIHIRO UNIVERSITY OF AGRICULTURE AND VETERINARY MEDICINE   (Japan)

^b HOKKAIDO UNIVERSITY   (Japan)

Author keywords

ABC protein; Abiotic stress; Gene expression; Phytohormone; Rcn1 OsABCG5; Rice

Indexed keywords

ABC TRANSPORTER G; ABSCISIC ACID; MANNITOL; PHYTOHORMONE; SODIUM CHLORIDE; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ABIOTIC STRESS; ARTICLE; DATA BASE; EXPRESSED SEQUENCE TAG; GENE CLUSTER; GENE CONTROL; GENE EXPRESSION; GENE STRUCTURE; MONOCOT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT CHROMOSOME; PLANT GENE; PLANT GENOME; PLANT RESPONSE; PLANT ROOT; PRIORITY JOURNAL; PROTEIN FUNCTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RICE; SEEDLING; SHOOT; TEMPERATURE; UPREGULATION;

ATP-BINDING CASSETTE TRANSPORTERS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENOME-WIDE ASSOCIATION STUDY; ORYZA SATIVA; PHYLOGENY; PLANT GROWTH REGULATORS; PLANT PROTEINS; STRESS, PHYSIOLOGICAL;

ARABIDOPSIS; ARABIDOPSIS THALIANA; DICOTYLEDONEAE; LILIOPSIDA;

EID: 84867395248     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-012-0719-3     Document Type: Article

References (52)

1. Adams MD, Kerlavage AR, Fleischmann RD, Fuldner RA, Bult CJ, Lee NH, Kirkness EF, Weinstock KG, Gocayne JD, White O (1995) Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature 377:3-174
2. Alonso-Ramirez A, Rodriguez D, Reyes D, Jimenez JA, Nicolas G, Lopez-Climent M, Gomez-Cadenas A, Nicolas C (2009) Evidence for a role of gibberellins in salicylic acid modulated early plant responses to abiotic stress in Arabidopsis thaliana seeds. Plant Physiol 150:1335-1344
3. Argueso CT, Ferreira FJ, Kieber JJ (2009) Environmental perception avenues: the interaction of cytokinin and environmental response pathways. Plant, Cell Environ 32:1147-1160
4. Ariyaratna M, Takamure I, Kato K (2011) Plant architecture and its responses to high planting density and low fertilizer of reduced culm number mutants in rice (Oryza sativa L.). J Plant Breed Crop Sci 3:114-119
5. Bird DA (2008) The role of ABC transporters in cuticular lipid secretion. Plant Sci 174:563-569
6. Bird D, Beisson F, BrighamA, Shin J, Greer S, Jetter R, Kunst L, WuX, Yephremov A, Samuels L (2007) Characterization of Arabidopsis ABCG11/WBC11, an ATP binding cassette (ABC) transporter that is required for cuticular lipid secretion. Plant J 52:485-498
7. Boyer JS (1982) Plant productivity and environment. Science 218: 443-448
8. Choi H, Jin JY, Choi S, Hwang JU, Kim YY, Suh MC, Lee Y (2011) An ABCG/WBC-type ABC transporter is essential for transport of sporopollenin precursors for exine formation in developing pollen. Plant J 65:181-193
9. Ciais Ph, Reichstein M, Viovy N, Granier A, Ogée J, Allard V, Aubinet M, Buchmann N, Bernhofer Chr, Carrara A, Chevallier F, De Noblet N, Friend AD, Friedlingstein P, Grünwald T, Heinesch B, Keronen P,Knohl A, KrinnerG, LoustauD,Manca G, Matteucci G, Miglietta F, Ourcival JM, Papale D, Pilegaard K,Rambal S, Seufert G, Soussana JF, Sanz MJ, Schulze ED, Vesala T, Valentini R (2005) Europe-wide reduction in primary productivity caused by the heat and drought in 2003. Nature 437:529-533
10. De Hoon MJL, Imoto S, Nolan J, Miyao S (2004) Open source clustering software. Bioinformatics 20:1453-1454
11. Divi UK, Krishna P (2009) Brassinosteroid: a biotechnological target for enhancing crop yield and stress tolerance. New Biotechnol 26:131-136
12. Dou X-Y, Yang K-Z, Zhang Y, Wang W, Liu X-L, Chen L-Q, Zhang X-Q, Ye D (2011) WBC27, an adenosine tri-phosphate-binding cassette protein, controls pollen wall formation and patterning in Arabidopsis. J Int Plant Biol 53:74-88
13. Dreesen TD, Johnson DH, Henikoff S (1988) The brown protein of Drosophila melanogaster is similar to the white protein and to components of active transport complexes. Mol Cell Biol 8:5206-5215
14. Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95:14863-14868
15. Garcia O, Bouige P, Forestier C, Dassa E (2004) Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems. J Mol Biol 343:249-265
16. Higgins CF (1992) ABC transporters: from microorganisms to man. Annu Rev Cell Biol 8:67-113
17. Higgins CF, Linton KJ (2004) The ATP switch model for ABC transporters. Nat Struct Mol Biol 11:918-926
18. Ingram J, Bartels D (1996) The molecular basis of dehydration tolerance in plants. Annu Rev Plant Physiol Plant Mol Biol 47:377-403
19. Jasinski M, Ducos E, Martinoia E, Boutry M (2003) The ATP-binding cassette transporters: structure, function, and gene family comparison between rice and Arabidopsis. Plant Physiol 131: 1169-1177
20. Jones B, Gunneras SA, Petersson SV, Tarkowski P, Graham N, May S, Dolezal K, Sandberg G, Ljung K (2010) Cytokinin regulation of auxin synthesis in Arabidopsis involves a homeostatic feedback loop regulated via auxin and cytokinin signal transduction. Plant Cell 22:2956-2969
21. Kuromori T, Miyaji T, Yabuuchi H, Shimizu H, Sugimoto E, Kamiya A, Moriyama Y, Shinozaki K (2010) ABC transporter AtABCG25 is involved in abscisic acid transport and responses. Proc Natl Acad Sci USA 107:2361-2366
22. Kuromori T, Ito T, Sugimoto E, Shinozaki K (2011a) Arabidopsis mutant of AtABCG26, an ABC transporter gene, is defective in pollen maturation. J Plant Physiol 168:2001-2005
23. Kuromori T, Sugimoto E, Shinozaki K (2011b) Arabidopsis mutants of AtABCG22, an ABC transporter gene, increase water transpiration and drought susceptibility. Plant J 67:885-894
24. Luo B, Xue X-Y, Hu W-L, Wang L-J, Chen X-Y (2007) An ABC transporter gene of Arabidopsis thaliana, AtWBC11, is involved in cuticle development and prevention of organ fusion. Plant Cell Physiol 48:1790-1802
25. McFarlane HE, Shin JJ, Bird DA, Samuels AL (2010) Arabidopsis ABCG transporters, which are required for export of diverse cuticular lipids, dimerize in different combinations. Plant Cell 22:3066-3075
26. Mentewab A, Stewart CN Jr (2005) Overexpression of an Arabidopsis thaliana ABC transporter confers kanamycin resistance to transgenic plants. Nat Biotechnol 23:1177-1180
27. Messing SAJ, Gabelli SB, Echeverria I, Vogel JT, Guan JC, Tan BC, Klee HJ, McCarty DR, Amzel LM (2010) Structural insights into maize Viviparous14, a key enzyme in the biosynthesis of the phytohormone abscisic acid. Plant Cell 22:2970-2980
28. Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tabacco tissue cultures. Physiol Plant 15:473-497
29. Oh SJ, Song SI, Kim YS, Jang HJ, Kim SY, Kim M, Kim YK, Nahm BH, Kim JK (2005) Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased tolerance to abiotic stress without stunting growth. Plant Physiol 38:341-351
30. Panikashvili D, Savaldi-Goldstein S, Mandel T, Yifhar T, Franke RB, Höfer R, Schreiber L, Chory J, Aharoni A (2007) The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion. Plant Physiol 145:1345-1360
31. Panikashvili D, Shi JX, Bocobza S, Franke RB, Schreiber L, Aharoni A (2010) The Arabidopsis DSO/ABCG11 transporter affects cutin metabolism in reproductive organs and suberin in roots. Mol Plant 3:563-575
32. Panikashvili D, Shi JX, Schreiber L, Aharoni A (2011) The Arabidopsis ABCG13 transporter is required for flower cuticle secretion and patterning of the petal epidermis. New Phytol 190:113-124
33. Peleg Z, Blumwald E (2011) Hormone balance and abiotic stress tolerance in crop plants. Curr Opin Plant Biol 14:290-295
34. Pighin JA, Zheng H, Balakshin LJ, Goodman IP, Western TL, Jetter R, Kunst L, Samuels AL (2004) Plant cuticular lipid export requires an ABC transporter. Science 22:702-704
35. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
36. Samuels L, Kunst L, Jetter R (2008) Sealing plant surfaces: cuticular wax formation by epidermal cells. Annu Rev Plant Biol 59: 683-707
37. Sanchez-Fernandez R, Davies TG, Coleman JO, Rea PA (2001) The Arabidopsis thaliana ABC protein superfamily: a complete inventory. J Biol Chem 276:30231-30244
38. Santner A, Estelle M (2009) Recent advances and emerging trends in plant hormone signalling. Nature 459:1071-1078
39. Santner A, Estelle M (2010) The ubiquitin-proteasome system regulates plant hormone signaling. Plant J 61:1029-1040
40. Shinozaki K, Yamaguchi-Shinozaki K (2000) Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Curr Opin Plant Biol 3:217-223
41. Sugiyama A, Shitan N, Sato S, Nakamura Y, Tabata S, Yazaki K (2006) Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family. DNA Res 13:205-228
42. Takamure I (1994) Genetic studies on several mutants related to morphological and physiological characters in rice. Mem Fac Agr Hokkaido Univ 19:151-202
43. Takamure I, Kinoshita T (1985) Inheritance and expression of reduced culm number character in rice. Jpn J Breed 35:17-24
44. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
45. Tsuchisaka A, Theologis A (2004) Unique and overlapping expression patterns among the Arabidopsis 1-amino-cyclopropane-1- carboxylate synthase gene family members. Plant Physiol 136: 2982-3000
46. Ureshi A, Matuda S, Ohashi E, Onishi K, Takamure I, Kato K (2012) The rice RCN1/OsABCG5 mutation is associated with root development in response to nutrient shortage. Plant Root (in press)
47. Verrier PJ, Bird D, Burla B, Dassa E, Forestier C, Geisler M, Klein M, Kolukisaoglu U, Lee Y, Martinoia E, Murphy A, Rea PA, Samuels L, Schulz B, Spalding EJ, Yazaki K, Theodoulou FL (2008) Plant ABC proteins: a unified nomenclature and updated inventory. Trends Plant Sci 13:151-159
48. Wang L, Wang Z, Xu Y, Joo S-H, Kim S-K, Xue Z, Xu Z, Wang Z, Chong K (2009) OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice. Plant J 57:498-510
49. Yasuno N, Yasui Y, Takamure I, Kato K (2007) Genetic interaction between 2 tillering genes, reduced culm number1 (rcn1) and tillering dwarf genes d3, in rice. J Hered 98:169-172
50. Yasuno N, Takamure I, Kidou S, Tokuji Y, Ureshi AN, Funabiki A, Ashikaga K, Yamanouchi U, Yano M, Kato K (2009) Rice shoot branching requires an ATP-binding cassette subfamily G protein. New Phytol 182:91-101
51. Zhang Q, Blaylock LA, Harrison MJ (2010) Two Medicago trucatula half-ABC transporters are essential for arbuscule development in arbuscular mycorrhizal symbiosis. Plant Cell 22:1483-1497
52. Zhu JK (2002) Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 53:247-273