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Volumn 882, Issue , 2012, Pages 173-182

Genotyping of single nucleotide polymorphisms by 5′ nuclease allelic discrimination

Author keywords

Fluorescent label; Real time polymerase chain reaction; Reporter dye; Single nucleotide polymorphism; TaqMan chemistry

Indexed keywords

5' NUCLEASE; GENOMIC DNA; NUCLEASE; UNCLASSIFIED DRUG; 5' NUCLEOTIDASE;

EID: 84867373862     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-842-9_10     Document Type: Article
Times cited : (35)

References (30)
  • 1
    • 0030861903 scopus 로고    scopus 로고
    • The use of a genetic map of biallelic markers in linkage studies
    • Kruglyak L (1997) The use of a genetic map of biallelic markers in linkage studies. Nat Genet 17:21-24
    • (1997) Nat Genet , vol.17 , pp. 21-24
    • Kruglyak, L.1
  • 2
    • 0032524383 scopus 로고    scopus 로고
    • Large-scale identi fication, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
    • Wang DG et al (1998) Large-scale identi fication, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280:1077-1082
    • (1998) Science , vol.280 , pp. 1077-1082
    • Wang, D.G.1
  • 3
    • 0033039497 scopus 로고    scopus 로고
    • Prospects for whole-genome linkage disequilibrium mapping of common disease genes
    • Kruglyak L (1999) Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat Genet 22:139-144
    • (1999) Nat Genet , vol.22 , pp. 139-144
    • Kruglyak, L.1
  • 4
    • 0035865322 scopus 로고    scopus 로고
    • A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
    • The International SNP Map Working Group
    • The International SNP Map Working Group (2001) A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409:928-933
    • (2001) Nature , vol.409 , pp. 928-933
  • 5
    • 0035094764 scopus 로고    scopus 로고
    • Variation is the spice of life
    • Kruglyak L, Nickerson DA (2001) Variation is the spice of life. Nat Genet 27:234-236
    • (2001) Nat Genet , vol.27 , pp. 234-236
    • Kruglyak, L.1    Nickerson, D.A.2
  • 6
    • 0035173378 scopus 로고    scopus 로고
    • DbSNP: The NCBI database of genetic variation
    • Sherry ST et al (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29:308-311
    • (2001) Nucleic Acids Res , vol.29 , pp. 308-311
    • Sherry, S.T.1
  • 7
    • 77956331627 scopus 로고    scopus 로고
    • Integrating common and rare genetic variation in diverse human populations
    • International HapMap 3 Consortium et al
    • International HapMap 3 Consortium et al (2010) Integrating common and rare genetic variation in diverse human populations. Nature 467:52-58
    • (2010) Nature , vol.467 , pp. 52-58
  • 8
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium et al
    • 1000 Genomes Project Consortium et al (2010) A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 9
    • 0034789532 scopus 로고    scopus 로고
    • Haplotype tagging for the identi fication of common disease genes
    • Johnson GC et al (2001) Haplotype tagging for the identi fication of common disease genes. Nat Genet 29:233-237
    • (2001) Nat Genet , vol.29 , pp. 233-237
    • Johnson, G.C.1
  • 10
    • 0346373654 scopus 로고    scopus 로고
    • Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
    • Carlson CS et al (2004) Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet 74: 106-120
    • (2004) Am J Hum Genet , vol.74 , pp. 106-120
    • Carlson, C.S.1
  • 11
    • 60549083544 scopus 로고    scopus 로고
    • An open access database of genome-wide association studies
    • Johnson AD, O'Donnell CJ (2009) An open access database of genome-wide association studies. BMC Med Genet 10:6-23
    • (2009) BMC Med Genet , vol.10 , pp. 6-23
    • Johnson, A.D.1    O'Donnell, C.J.2
  • 12
    • 0344721480 scopus 로고    scopus 로고
    • Complete sequence and gene map of a human major histocompatibility complex
    • The MHC Sequencing Consortium
    • The MHC Sequencing Consortium (1999) Complete sequence and gene map of a human major histocompatibility complex. Nature 401:921-923
    • (1999) Nature , vol.401 , pp. 921-923
  • 13
    • 0041828234 scopus 로고    scopus 로고
    • An integrated haplotype map of the human major histocompatibility complex
    • Walsh EC et al (2001) An integrated haplotype map of the human major histocompatibility complex. Am J Hum Genet 73:580-590
    • (2001) Am J Hum Genet , vol.73 , pp. 580-590
    • Walsh, E.C.1
  • 14
    • 9444295337 scopus 로고    scopus 로고
    • Gene map of the extended human MHC
    • Horton R et al (2004) Gene map of the extended human MHC. Nat Rev Genet 5:889-899
    • (2004) Nat Rev Genet , vol.5 , pp. 889-899
    • Horton, R.1
  • 15
    • 20144388362 scopus 로고    scopus 로고
    • A high-resolution linkage-disequilibrium map of the human major histocompatibility complex andfirst generation of tag single-nucleotide polymorphisms
    • Miretti MM et al (2005) A high-resolution linkage-disequilibrium map of the human major histocompatibility complex andfirst generation of tag single-nucleotide polymorphisms. Am J Hum Genet 76:634-646
    • (2005) Am J Hum Genet , vol.76 , pp. 634-646
    • Miretti, M.M.1
  • 16
    • 33749137515 scopus 로고    scopus 로고
    • A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC
    • de Bakker PI et al (2006) A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nat Genet 38:1166-1172
    • (2006) Nat Genet , vol.38 , pp. 1166-1172
    • De Bakker, P.I.1
  • 17
    • 77956205618 scopus 로고    scopus 로고
    • A major histocompatibility Class i locus contributes to multiple sclerosis susceptibility independently from HLA-DRB1* 15.01
    • Cree BA et al (2010) A major histocompatibility Class I locus contributes to multiple sclerosis susceptibility independently from HLA-DRB1* 15:01. PLoS One 5:e11296
    • (2010) PLoS One , vol.5
    • Cree, B.A.1
  • 18
    • 67649979852 scopus 로고    scopus 로고
    • Defining multiple common "completely" conserved major histocompatibility complex SNP haplotypes
    • Baschal EE et al (2009) Defining multiple common "completely" conserved major histocompatibility complex SNP haplotypes. Clin Immunol 132:203-214
    • (2009) Clin Immunol , vol.132 , pp. 203-214
    • Baschal, E.E.1
  • 19
    • 73249122274 scopus 로고    scopus 로고
    • Mapping of multiple susceptibility variants within the MHC region for 7 immune-mediated diseases
    • International MHC and Autoimmunity Genetics Network et al.
    • International MHC and Autoimmunity Genetics Network et al (2009) Mapping of multiple susceptibility variants within the MHC region for 7 immune-mediated diseases. Proc Natl Acad Sci USA 106(44):18680-18685
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.44 , pp. 18680-18685
  • 20
    • 58549114021 scopus 로고    scopus 로고
    • Several loci in the HLA class III region are associated with T1D risk after adjusting for DRB1-DQB1
    • Type 1 Diabetes Genetics Consortium
    • Valdes AM, Thomson G, Type 1 Diabetes Genetics Consortium (2009) Several loci in the HLA class III region are associated with T1D risk after adjusting for DRB1-DQB1. Diabetes Obes Metab 11(suppl 1):46-52
    • (2009) Diabetes Obes Metab , vol.11 , Issue.SUPPL. 1 , pp. 46-52
    • Valdes, A.M.1    Thomson, G.2
  • 21
    • 10344227722 scopus 로고    scopus 로고
    • An update of the HLA genomic region, locus information and disease associations: 2004
    • Shiina T, Inoko H, Kulski JK (2004) An update of the HLA genomic region, locus information and disease associations: 2004. Tissue Antigens 64:631-649
    • (2004) Tissue Antigens , vol.64 , pp. 631-649
    • Shiina, T.1    Inoko, H.2    Kulski, J.K.3
  • 22
    • 0022372670 scopus 로고
    • Enzymatic ampli fication of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
    • Saiki RK et al (1985) Enzymatic ampli fication of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230:1350-1354
    • (1985) Science , vol.230 , pp. 1350-1354
    • Saiki, R.K.1
  • 23
    • 0023461268 scopus 로고
    • Speci ficsynthesis of DNA in vitro via a polymerase-catalyzed chain reaction
    • Mullis KB, Faloona FA (1987) Speci ficsynthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol 155:335-350
    • (1987) Methods Enzymol , vol.155 , pp. 335-350
    • Mullis, K.B.1    Faloona, F.A.2
  • 24
    • 15744381713 scopus 로고
    • Kinetic PCR analysis: Real-time monitoring of DNA ampli fication reactions
    • Higuchi R et al (1993) Kinetic PCR analysis: real-time monitoring of DNA ampli fication reactions. Biotechnology (NY) 11: 1026-1030
    • (1993) Biotechnology (NY) , vol.11 , pp. 1026-1030
    • Higuchi, R.1
  • 25
    • 0032091098 scopus 로고    scopus 로고
    • Quanti fication of low-copy transcripts by continuous SYBR Green i monitoring during ampli fication
    • 960; 962
    • Morrison TB, Weis JJ, Wittwer CT (1998) Quanti fication of low-copy transcripts by continuous SYBR Green I monitoring during ampli fication. Biotechniques 24:954-958; 960; 962
    • (1998) Biotechniques , vol.24 , pp. 954-958
    • Morrison, T.B.1    Weis, J.J.2    Wittwer, C.T.3
  • 26
    • 0031969531 scopus 로고    scopus 로고
    • Molecular beacon sequence analysis for detecting drug resistance in Mycobacterium tuberculosis
    • Piatek AS et al (1998) Molecular beacon sequence analysis for detecting drug resistance in Mycobacterium tuberculosis . Nat Biotechnol 16:359-363
    • (1998) Nat Biotechnol , vol.16 , pp. 359-363
    • Piatek, A.S.1
  • 27
    • 0345129990 scopus 로고    scopus 로고
    • Multiplex detection of single-nucleotide variations using molecular beacons
    • Marras SA, Kramer FR, Tyagi S (1999) Multiplex detection of single-nucleotide variations using molecular beacons. Genet Anal 14:151-156
    • (1999) Genet Anal , vol.14 , pp. 151-156
    • Marras, S.A.1    Kramer, F.R.2    Tyagi, S.3
  • 28
    • 0035713577 scopus 로고    scopus 로고
    • Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR
    • Mhlanga MM, Malmberg L (2001) Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR. Methods 25:463-471
    • (2001) Methods , vol.25 , pp. 463-471
    • Mhlanga, M.M.1    Malmberg, L.2
  • 29
    • 0025861818 scopus 로고
    • Detection of speci ficpolymerase chain reaction product by utilizing the 5 ¢ -3 ¢ exonuclease activity of Thermus aquaticus DNA polymerase
    • Holland PM et al (1991) Detection of speci ficpolymerase chain reaction product by utilizing the 5 ¢ -3 ¢ exonuclease activity of Thermus aquaticus DNA polymerase. Proc Natl Acad Sci USA 88:7276-7280
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 7276-7280
    • Holland, P.M.1
  • 30
    • 0029957181 scopus 로고    scopus 로고
    • Real time quantitative PCR
    • Heid CA et al (1996) Real time quantitative PCR. Genome Res 6:986-994
    • (1996) Genome Res , vol.6 , pp. 986-994
    • Heid, C.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.