메뉴 건너뛰기




Volumn 4, Issue 18, 2012, Pages 2195-2197

Realising the potential of metabolomics

Author keywords

Core Information for Metabolomics Reporting; database; metabolic profiling; metabolite assignment; metabolome; metabolomics; metabonomics; phenome; standard

Indexed keywords

ANALYTIC METHOD; CELL TYPE; CHEMICAL ANALYSIS; DATA ANALYSIS; DATA BASE; GAS CHROMATOGRAPHY; INFORMATION SYSTEM; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLITE; METABOLOME; METABOLOMICS; MOLECULE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; ONLINE SYSTEM; REVIEW; SMALL MOLECULE; STANDARD;

EID: 84867350029     PISSN: 17576180     EISSN: 17576199     Source Type: Journal    
DOI: 10.4155/bio.12.209     Document Type: Review
Times cited : (7)

References (29)
  • 1
    • 58149202163 scopus 로고    scopus 로고
    • HMDB: A knowledgebase for the human metabolome
    • Wishart DS, Knox C, Guo AC et al. HMDB: a knowledgebase for the human metabolome. Nucl. Acids Res. 37, D603-D610 (2009).
    • (2009) Nucl. Acids Res. , vol.37
    • Wishart, D.S.1    Knox, C.2    Guo, A.C.3
  • 2
    • 75549092202 scopus 로고    scopus 로고
    • Chemical Entities of Biological Interest: An update
    • de Matos P, Alcántara R, Dekker A et al. Chemical Entities of Biological Interest: an update. Nucl. Acids Res. 38(Suppl. 1), D249-D254 (2010).
    • (2010) Nucl. Acids Res. , vol.38 , Issue.SUPPL. 1
    • De Matos, P.1    Alcántara, R.2    Dekker, A.3
  • 4
    • 84855888813 scopus 로고    scopus 로고
    • Birmingham Metabolite Library: A publicly accessible database of 1-D 1H and 2-D 1H J-resolved NMR spectra of authentic metabolite standards (BML-NMR)
    • Ludwig C, Easton JM, Lodi A et al. Birmingham Metabolite Library: a publicly accessible database of 1-D 1H and 2-D 1H J-resolved NMR spectra of authentic metabolite standards (BML-NMR). Metabolomics 8(1), 8-18 (2012).
    • (2012) Metabolomics , vol.8 , Issue.1 , pp. 8-18
    • Ludwig, C.1    Easton, J.M.2    Lodi, A.3
  • 5
    • 32444432587 scopus 로고    scopus 로고
    • METLIN: A metabolite mass spectral database
    • Smith CA, O'Maille G, Want EJ et al. METLIN: a metabolite mass spectral database. Ther. Drug Monit. 27(6), 747-751 (2005).
    • (2005) Ther. Drug Monit. , vol.27 , Issue.6 , pp. 747-751
    • Smith, C.A.1    O'Maille, G.2    Want, E.J.3
  • 6
    • 53249144283 scopus 로고    scopus 로고
    • PRIMe: A website that assembles tools for metabolomics and transcriptomics
    • Akiyama K, Chikayama E, Yuasa H et al. PRIMe: a website that assembles tools for metabolomics and transcriptomics. In Silico Biol. 8(3-4), 339-345 (2008).
    • (2008) Silico Biol. , vol.8 , Issue.3-4 , pp. 339-345
    • Akiyama, K.1    Chikayama, E.2    Yuasa, H.3
  • 7
    • 84861915827 scopus 로고    scopus 로고
    • XCMS Online: A web-based platform to process untargeted metabolomic data
    • Tautenhahn R, Patti GJ, Rinehart D, Siuzdak G. XCMS Online: a web-based platform to process untargeted metabolomic data. Anal. Chem. 84(11), 5035-5039 (2012).
    • (2012) Anal. Chem. , vol.84 , Issue.11 , pp. 5035-5039
    • Tautenhahn, R.1    Patti, G.J.2    Rinehart, D.3    Siuzdak, G.4
  • 8
    • 34748901177 scopus 로고    scopus 로고
    • Standard reporting requirements for biological samples in metabolomics experiments: Mammalian/in vivo experiments
    • Griffin JL, Nicholls AW, Daykin CA et al. Standard reporting requirements for biological samples in metabolomics experiments: mammalian/in vivo experiments. Metabolomics 3, 179-188 (2007).
    • (2007) Metabolomics , vol.3 , pp. 179-188
    • Griffin, J.L.1    Nicholls, A.W.2    Daykin, C.A.3
  • 9
    • 34748850650 scopus 로고    scopus 로고
    • Standard reporting requirements for biological samples in metabolomics experiments: Microbial and in vitro biology experiments
    • van der Werf MJ, Takors R, Smedsgaard J et al. Standard reporting requirements for biological samples in metabolomics experiments: microbial and in vitro biology experiments. Metabolomics 3, 189-194 (2007).
    • (2007) Metabolomics , vol.3 , pp. 189-194
    • Van Der Werf, M.J.1    Takors, R.2    Smedsgaard, J.3
  • 10
    • 34748846274 scopus 로고    scopus 로고
    • Minimum reporting standards for plant biology context information in metabolomic studies
    • Fiehn O, Sumner LW, Rhee SY et al. Minimum reporting standards for plant biology context information in metabolomic studies. Metabolomics 3, 195-201 (2007).
    • (2007) Metabolomics , vol.3 , pp. 195-201
    • Fiehn, O.1    Sumner, L.W.2    Rhee, S.Y.3
  • 11
    • 34748869539 scopus 로고    scopus 로고
    • Standard reporting requirements for biological samples in metabolomics experiments: Environmental context
    • Morrison N, Bearden D, Bundy JG et al. Standard reporting requirements for biological samples in metabolomics experiments: environmental context. Metabolomics 3, 203-210 (2007).
    • (2007) Metabolomics , vol.3 , pp. 203-210
    • Morrison, N.1    Bearden, D.2    Bundy, J.G.3
  • 12
    • 34748888866 scopus 로고    scopus 로고
    • Proposed minimum reporting standards for chemical analysis Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI)
    • Sumner LW, Amberg A, Barrett D et al. Proposed minimum reporting standards for chemical analysis Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI). Metabolomics 3, 211-221 (2007).
    • (2007) Metabolomics , vol.3 , pp. 211-221
    • Sumner, L.W.1    Amberg, A.2    Barrett, D.3
  • 13
    • 34748839546 scopus 로고    scopus 로고
    • Proposed minimum reporting standards for data analysis in metabolomics
    • Goodacre R, Broadhurst D, Smilde AK et al. Proposed minimum reporting standards for data analysis in metabolomics. Metabolomics 3, 231-241 (2007).
    • (2007) Metabolomics , vol.3 , pp. 231-241
    • Goodacre, R.1    Broadhurst, D.2    Smilde, A.K.3
  • 14
    • 34748845094 scopus 로고    scopus 로고
    • Metabolomics standards initiative: Ontology working group work in progress
    • Sansone S, Schober D, Atherton HJ et al. Metabolomics standards initiative: ontology working group work in progress. Metabolomics 3, 249-256 (2007).
    • (2007) Metabolomics , vol.3 , pp. 249-256
    • Sansone, S.1    Schober, D.2    Atherton, H.J.3
  • 15
    • 34748891078 scopus 로고    scopus 로고
    • A roadmap for the establishment of standard data exchange structures for metabolomics
    • Hardy NW, Taylor CF. A roadmap for the establishment of standard data exchange structures for metabolomics. Metabolomics 3, 243-248 (2007).
    • (2007) Metabolomics , vol.3 , pp. 243-248
    • Hardy, N.W.1    Taylor, C.F.2
  • 17
    • 39149126712 scopus 로고    scopus 로고
    • Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts
    • Beckonert O, Keun HC, Ebbels TM et al. Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts. Nat. Protoc. 2(11), 2692-2703 (2007).
    • (2007) Nat. Protoc. , vol.2 , Issue.11 , pp. 2692-2703
    • Beckonert, O.1    Keun, H.C.2    Ebbels, T.M.3
  • 18
    • 79959913950 scopus 로고    scopus 로고
    • Human Serum Metabolome (HUSERMET) Consortium. Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
    • Dunn WB, Broadhurst D, Begley P et al. Human Serum Metabolome (HUSERMET) Consortium. Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nat. Protoc. 6(7), 1060-1083 (2011).
    • (2011) Nat. Protoc. , vol.6 , Issue.7 , pp. 1060-1083
    • Dunn, W.B.1    Broadhurst, D.2    Begley, P.3
  • 19
    • 84872888451 scopus 로고    scopus 로고
    • Human Metabolome Database. www.hmdb.ca
  • 22
    • 84872879361 scopus 로고    scopus 로고
    • Biological Magnetic Resonance Data Bank. www.bmrb.wisc.edu
  • 23
    • 84872881297 scopus 로고    scopus 로고
    • Birmingham Metabolite Library. www.bml-nmr.org
  • 24
    • 84872890987 scopus 로고    scopus 로고
    • METLIN: Metabolite and Tandem MS database. http://metlin.scripps.edu
  • 25
    • 84872890916 scopus 로고    scopus 로고
    • Platform for Riken Metaoblomics. http://prime.psc.riken.jp
  • 26
    • 84872884814 scopus 로고    scopus 로고
    • The MetaboLights Project. www.ebi.ac.uk/metabolights
  • 27
    • 84872886635 scopus 로고    scopus 로고
    • XCMS Online. https://xcmsonline.scripps.edu
  • 28
    • 84872890518 scopus 로고    scopus 로고
    • ChemSpider - the free chemical database. www.chempsider.com
  • 29
    • 84872882027 scopus 로고    scopus 로고
    • MRC-NIHR Phenome Centre. www.mediacentre.dh.gov. uk/2012/08/01/a- phenomenal-legacy-for-london-2012


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.