DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem

Plant, Cell and Environment

Volumn 35, Issue 11, 2012, Pages 2031-2044

  Sato Izawa, Kanna ^a   Nakaba, Satoshi ^a   Tamura, Katsunori ^b   Yamagishi, Yusuke ^a   Nakano, Yoshimi ^a   Nishikubo, Nobuyuki ^a,e   Kawai, Shinya ^a   Kajita, Shinya ^a   Ashikari, Motoyuki ^c   Funada, Ryo ^a   Katayama, Yoshihiro ^d   Kitano, Hidemi ^c  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

^b NATIONAL AGRICULTURAL RESEARCH CENTER FOR KYUSHU OKINAWA REGION   (Japan)

^c NAGOYA UNIVERSITY   (Japan)

^d NIHON UNIVERSITY   (Japan)

^e Forestry Research Institute   (Japan)

Author keywords

Actin organization; Cell wall pectins; Dwarf 50; Oriented cell division

Indexed keywords

ACTIN; INOSITOL 1,4,5 TRISPHOSPHATE 5 PHOSPHATASE; INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE; PECTIN; PHOSPHATASE; VEGETABLE PROTEIN;

CYTOGENETICS; CYTOLOGY; ENZYME ACTIVITY; GENOME; PHENOTYPE; RICE;

AMINO ACID SEQUENCE; ARTICLE; CELL DIVISION; CELL SHAPE; CELL WALL; CHROMOSOME MAP; ENZYMOLOGY; GENETICS; GROWTH, DEVELOPMENT AND AGING; MERISTEM; METABOLISM; MICROTUBULE; MOLECULAR CLONING; MOLECULAR GENETICS; MUTATION; PHYLOGENY; PHYSIOLOGY; RICE; SEQUENCE ALIGNMENT; ULTRASTRUCTURE;

ACTINS; AMINO ACID SEQUENCE; CELL DIVISION; CELL SHAPE; CELL WALL; CHROMOSOME MAPPING; CLONING, MOLECULAR; MERISTEM; MICROTUBULES; MOLECULAR SEQUENCE DATA; MUTATION; ORYZA SATIVA; PECTINS; PHOSPHORIC MONOESTER HYDROLASES; PHYLOGENY; PLANT PROTEINS; SEQUENCE ALIGNMENT;

EUKARYOTA; ORYZA SATIVA;

EID: 84867337288     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/j.1365-3040.2012.02534.x     Document Type: Article

References (54)

1. Abe H., Funada R., Imaizumi H., Ohtani J. & Fukuzawa K. (1995a) Dynamic changes in the arrangement of cortical microtubules in conifer tracheids during differentiation. Planta 197, 418-421.
2. Abe H., Funada R., Ohtani J. & Fukuzawa K. (1995b) Changes in the arrangement of microtubules and microfibrils in differentiating conifer tracheids during the expansion of cells. Annals of Botany 75, 305-310.
3. Ashikari M., Sasaki A., Ueguchi-Tanaka M., etal. (2002) Loss-of-function of a rice gibberellin biosynthetic gene, GA20 oxidase (GA20ox-2), led to the rice 'Green Revolution. Breeding Science 52, 143-150.
4. Baluška F., Jasik J., Edelmann H.G., Salajová T. & Volkmann D. (2001) Latrunculin B-induced plant dwarfism: plant cell elongation is F-actin dependent. Developmental Biology 231, 113-124.
5. Baluška F., Hlavacka A., Šmaj J., Palme K., Robinson D.G., Matoh T., McCurdy D.W., Menzel D. & Volkmann D. (2002) F-actin-dependent endocytosis of cell wall pectins in meristematic root cells. Insights from brefeldin A-induced compartments. Plant Physiology 130, 422-431.
6. Baluška F., Liners F., Hlavačka A., Schlicht M., Van Cutsem P., McCurdy D.W. & Menzel D. (2005) Cell wall pectins and xyloglucans are internalized into dividing root cells and accumulate within cell plates during cytokinesis. Protoplasma 225, 141-155.
7. Berdy S.E., Kudla J., Gruissem W. & Gillaspy G.E. (2001) Molecular characterization of At5PTase1, an inositol phosphatase capable of terminating inositol trisphosphate signaling. Plant Physiology 126, 801-810.
8. Caffall K.H. & Mohnen D. (2009) The structure, function, and biosynthesis of plant cell wall pectic polysaccharides. Carbohydrate Research 344, 1879-1900.
9. Dhonukshe P., Baluška F., Schlicht M., Hlavacka A., Šamaj J., Friml J. & Gadella T.W. Jr (2006) Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis. Developmetal Cell 10, 137-150.
10. Dixon R.A. & Palva N.L. (1995) Stress-induced phenylpropanoid metabolism. The Plant Cell 7, 1085-1097.
11. Ercetin M.E. & Gillaspy G.E. (2002) Molecular characterization of an Arabidopsis gene encoding a phospholipid-specific inositol polyphosphate 5-phosphatase. Plant Physiology 135, 938-946.
12. Ercetin M.E., Ananieva E.A., Safaee N.M., Trobinejad J., Robinon J.Y. & Gillaspy G.E. (2008) A phosphatidylinositol phosphate-specific myo-inositol polyphosphate 5-phosphatase required for seedling growth. Plant Molecular Biology 67, 375-388.
13. Fujioka S. & Yokota T. (2003) Biosynthesis and metabolism of brassinosteroids. Annual Review of Plant Biology 54, 137-164.
14. Funada R. (2002) Immunolocalisation and visualization of the cytoskeleton in gymnosperms using confocal laser scanning microscopy (CLSM). In Wood Formation in Trees: Cell and Molecular Biology Techniques (ed. N. Chaffey ), pp. 143-157. Taylor and Francis, London.
15. Geisler D.A., Sampathkumar A., Mutwil M. & Persson S. (2008) Laying down the bricks: logistic aspects of cell wall biosynthesis. Current Opinion in Plant Biology 11, 647-652.
16. Gunesekera B., Torabinejad J., Robinson J. & Gillaspy G.E. (2007) Inositol polyphosphate 5-phosphatases 1 and 2 are required for regulating seedling growth. Plant Physiology 143, 1408-1417.
17. Hiei Y., Ohta S., Komari T. & Kumashiro T. (1994) Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. The Plant Journal 6, 271-282.
18. Hong Z., Ueguchi-Tanaka M., Shimizu-Sato S., et al. (2002) Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem. The Plant Journal 32, 495-508.
19. Hong Z., Ueguchi-Tanaka M., Umemura K., Uozu S., Fujioka S., Takatsuto S., Yoshida S., Ashikari M., Kitano H. & Matsuoka M. (2003) A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450. The Plant Cell 15, 2900-2910.
20. Hong Z., Ueguchi-Tanaka M., Fujioka S., Takatsuto S., Yoshida S., Hasezawa Y., Ashikari M., Kitano H. & Matsuoka M. (2005) The rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone. The Plant Cell 17, 2243-2254.
21. Itoh H., Tatsumi T., Sakamoto T., Otomo K., Toyomatsu T., Kitano H., Ashikari M., Ichihara S. & Matsuoka M. (2004) A rice semi-dwarf gene, Tan-Ginbouzu (D35), encodes the giberellin biosynthesis enzyme, ent-kaurene oxidase. Plant Molecular Biology 54, 533-547.
22. Iwai H., Masaoka N., Ishii T. & Satoh S. (2002) A pectin glucuronyltransferase gene is essential for intercellular attachment in the plant meristem. Proceedings of the National Academy of Sciences of the United States of America 99, 16319-16324.
23. Iwai H., Hokura A., Oishi M., Chida H., Ishii T., Sakai S. & Satoh S. (2006) The gene responsible for borate cross-linking of pectin rhamnogalacturonan-II is required for plant reproductive tissue development and fertilization. Proceedings of the National Academy of Sciences of the United States of America 103, 16592-16579.
24. Kitano H. & Futsuhara Y. (1981) Character expression of induced dwarf mutant in rice I. Effects of temperature on culm elongation in the dwarf mutant line, Fukei No.71. Japan Journal of Breeding 31, 9-18.
25. Kitano H. & Futsuhara Y. (1982) Character expression of induced dwarf mutant in rice II. Morphological and histological observations on the effects of temperature on culm elongation in the dwarf mutant line, Fukei No.71. Japan Journal of Breeding 32, 146-154.
26. Kovar D.R., Drobak B.K., Collings D.A. & Staiger C.J. (2001) The characterization of ligand-specific maize (Zea mays) profilin mutants. Biochemical Journal 358, 49-57.
27. Majerus P.W., Kisseleva M.V. & Norris F.A. (1999) The role of phosphatases in inositol signaling reactions. The Journal of Biological Chemistry 274, 10669-10672.
28. Mathur J., Mathur N., Kernebeck B. & Hülskamp M. (2003) Mutations in actin-related proteins 2 and 3 affect cell shape development in Arabidopsis. The Plant Cell 15, 1632-1645.
29. Mohnen D. (2008) Pectin structure and biosynthesis. Current Opinion in Plant Biology 11, 266-277.
30. Murai M., Shinbashi N., Kasutani A., Hirose S., Takamure I. & Kinoshita T. (1990) Identification of dwarf genes in rice lines, Yukara dwarf and Fukei 71, and its response to environmental factors. Japan Journal of Breeding 40, 33-45.
31. Nakaba S., Sano Y., Kubo T. & Funada R. (2006) The positional distribution of cell death of ray parenchyma in a conifer, Abies sachalinensis. Plant Cell Reports 25, 1143-1148.
32. Nakaba S., Yoshimoto J., Kubo T. & Funada R. (2008) Morphological changes in the cytoskeleton, nuclei, and vacuoles during cell death of short-lived ray tracheids in the conifer Pinus densiflora. Journal of Wood Science 54, 509-514.
33. Nakamura A., Fujioka S., Sunohara H., etal. (2006) The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice. Plant Physiology 140, 580-590.
34. Nishikubo N., Araki T., Kajita S., Kuroda K., Kitano H. & Katayama Y. (2000) Specific accumulation of polysaccharide-linked hydroxycinnamoyl esters in the cell walls of irregularly shaped and collapsed internode parenchyma cells of the dwarf rice mutant Fukei 71. Plant & Cell Physiology 41, 776-784.
35. Paolo G.D. & Camilli P.D. (2006) Phosphoinositides in cell regulation and membrane dynamics. Nature 443, 651-657.
36. Saitou N. & Nei M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology & Evolution 4, 406-425.
37. Sakamoto T., Miura K., Itoh H., etal. (2004) An overview of gibberellin metabolism enzyme genes and their related mutants in rice. Plant Physiology 134, 1642-1653.
38. Šamaj J., Baluška F., Voigt B., Schlicht M., Volkmann D. & Menzel D. (2004) Endocytosis, actin cytoskeleton, and signaling. Plant Physiology 135, 1150-1161.
39. Sapre A.B. (1969) Delafield's hematoxylin-Fast green mixture for bulk staining of plant materials. Cellular and Molecular Life Sciences 25, 226.
40. Sasaki A., Ashikari M., Ueguchi-Tanaka M., etal. (2002) A mutant gibberellin-synthesis gene in rice. Nature 416, 701-702.
41. Sato K., Ashikari M., Tamura K., Mase K., Kitano H., Matsuoka M. & Katayama Y. (2002) High resolution map of DWARF 50 (D50) in rice. Rice Genetics Newsletter 19, 31-33.
42. Sato Y., Sentoku N., Miura Y., Hirochika H., Kitano H. & Matsuoka M. (1999) Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants. The EMBO Journal 18, 992-1002.
43. Sunohara H., Miura K., Wu X., Saeda T., Mizuno S., Ashikari M., Matsuoka M. & Kitano H. (2006) Effects of Ssi1 gene controlling dm-type internode elongation pattern on lodging resistance and panicle characters in rice. Breeding Science 56, 261-268.
44. Sunohara H., Kawai T., Shimizu-Sato S., Sato Y., Sato K. & Kitano H. (2009) A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice. Genes & Genetic Systems 84, 209-218.
45. Takenawa T. & Itoh T. (2001) Phosphoinositides, key molecules for regulation of actin cytoskeletal organization and membrane traffic from plasma membrane. Biochimica et Biophysica Acta 1533, 190-206.
46. Tamura K., Dudley J., Nei M. & Kumar S. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology & Evolution 24, 1596-1599.
47. Tanabe S., Ashikari M., Fujioka S., etal. (2005) A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length. The Plant Cell 17, 776-790.
48. Verhertbruggen Y., Marcus S.E., Haeger A., Ordaz-Ortiz J.J. & Knox J.P. (2009) An extended set of monoclonal antibodies to pectic homogalacturonan. Carbohydrate Research 344, 1858-1862.
49. Wu X., Saeda T., Takeda K. & Kitano H. (2000) Dominant gene, Ssi1 expresses semidwarfism by inhibiting the second internode elongation in rice. Breeding Science 50, 17-22.
50. Xue H.W., Chen X. & Mei Y. (2009) Function and regulation of phospholipid signalling in plants. Biochemical Journal 421, 145-156.
51. Yamamuro C., Ihara Y., Wu X., Noguchi T., Fujioka S., Takatsubo S., Ashikari M., Kitano H. & Matsuoka M. (2000) Loss of function of rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint. The Plant Cell 12, 1591-1605.
52. Zhang G.F. & Staehelin L.A. (1992) Immunocytochemical analysis of high-pressure frozen- and freeze-substituted sycamore maple suspension culture cells. Plant Physiology 99, 1070-1083.
53. Zhong R. & Ye Z.H. (2004) Molecular and biochemical characterization of three WD-repeat-domain containing inositol polyphosphate 5-phosphatases in Arabidopsis thaliana. Plant & Cell Physiology 45, 1720-1728.
54. Zhong R., Burk D.H., Morrison W.H. 3rd & Ye Z.H. (2004) FRAGILE FIBER3, an Arabidopsis gene encoding a type II inositol polyphosphate 5-phosphatase, is required for secondary wall synthesis and actin organization in fiber cells. The Plant Cell 16, 3242-3259.