A fluorescent molecular switch for room temperature operation based on oligonucleotide hybridization without labeling of probes or targets

Analytica Chimica Acta

Volumn 750, Issue , 2012, Pages 182-190

  Massey, Melissa ^a   Krull, Ulrich J ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Amplicon; Fluorescence; Formamide; Molecular switch; Single nucleotide polymorphism; Thiazole orange

Indexed keywords

AMPLICONS; FORMAMIDES; MOLECULAR SWITCHES; SINGLE NUCLEOTIDE POLYMORPHISMS; THIAZOLE ORANGE;

ADSORPTION; DNA; FLUORESCENCE; OLIGONUCLEOTIDES; OPTICAL FIBERS; POLYMERASE CHAIN REACTION; PROBES; SIGNAL TO NOISE RATIO;

AMIDES;

DOUBLE STRANDED DNA; FORMAMIDE; OLIGONUCLEOTIDE;

AMPLICON; ARTICLE; BINDING AFFINITY; BIOTINYLATION; DENATURATION; DNA STRUCTURE; MICROENVIRONMENT; MOLECULAR DYNAMICS; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; ROOM TEMPERATURE; SIGNAL NOISE RATIO; SINGLE NUCLEOTIDE POLYMORPHISM; STRUCTURE ANALYSIS;

ACTINS; BENZOTHIAZOLES; FLUORESCENT DYES; FORMAMIDES; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDES; POLYMORPHISM, SINGLE NUCLEOTIDE; QUINOLINES; TEMPERATURE;

EID: 84867336625     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2012.05.007     Document Type: Article

References (44)

1. Cosa G., Focsaneanu K.S., McLean J.R.N., Scaiano J.C. Chem. Commun. 2000, 8:689.
2. Cosa G., Focsaneanu K.S., McLean J.R.N., McNamee J.P., Scaiano J.C. Photochem. Photobiol. 2001, 73:585.
3. Fei X.N., Gu Y.C., Lan Y.Q., Shi B. J. Lumin. 2011, 131:2148.
4. Fei X.N., Gu Y.C., Ban Y., Liu Z.J., Zhang B.L. Bioorg. Med. Chem. 2009, 17:585.
5. Tilsner J., Flors C. Chembiochem 2011, 12:1007.
6. Ikeda S., Kubota T., Yuki M., Okamoto A. Angew. Chem. Int. Ed. 2009, 48:6480.
7. Ikeda S., Okamoto A. Chem. Asian J. 2008, 3:958.
8. Ikeda S., Yuki M., Yanagisawa H., Okamoto A. Tetrahedron Lett. 2009, 50:7191.
9. Ikeda S., Kubota T., Kino K., Okamoto A. Bioconjug. Chem. 2008, 19:1719.
10. Kubota T., Ikeda S., Yanagisawa H., Yuki M., Okamoto A. Bioconjug. Chem. 2009, 20:1256.
11. Massey M., Krull U.J. Anal. Bioanal. Chem. 2010, 398:1605.
12. Nasef H., Beni V., O'Sullivan C.K. Anal. Methods 2010, 2:1461.
13. Watterson J.H., Raha S., Kotoris C.C., Wust C.C., Gharabaghi F., Jantzi S.C., Haynes N.K., Gendron N.H., Krull U.J., Mackenzie A.E., Piunno P.A.E. Nucleic Acids Res. 2004, 32:e18.
14. Wong A.K.Y., Marushchak D.O., Gradinaru C.C., Krull U.J. Anal. Chim. Acta 2010, 661:103.
15. Liedl T., Simmel F.C. Anal. Chem. 2007, 79:5212.
16. Qavi A.J., Mysz T.M., Bailey R.C. Anal. Chem. 2011, 83:6827.
17. Fuchs J., Dell'Atti D., Buhot A., Calemczuk R., Mascini M., Livache T. Anal. Biochem. 2010, 397:132.
18. Blake R.D., Delcourt S.G. Nucleic Acids Res. 1996, 24:2095.
19. Russom A., Irimia D., Toner M. Electrophoresis 2009, 30:2536.
20. McConaughy B.L., Laird C.D., McCarthy B.J. Biochemistry 1969, 8:3289.
21. Hutton J.R. Nucleic Acids Res. 1977, 4:3537.
22. Prodhomme S., Demaret J.-P., Vinogradov S., Asseline U., Morin-Allory L., Vigny P. J. Photochem. Photobiol. B 1999, 53:60.
23. Le Pecq J.B., Paoletti C. J. Mol. Biol. 1967, 27:87.
24. Deniss I.S., Morgan A.R. Nucleic Acids Res. 1976, 3:315.
25. Ikebukuro K., Kohiki Y., Sode K. Biosens. Bioelectron. 2002, 17:1075.
26. Algar W.R., Krull U.J. Langmuir 2010, 26:6041.
27. Algar W.R., Krull U.J. Langmuir 2009, 25:633.
28. Wang R.H., Tombelli S., Minunni M., Spiriti M.M., Mascini M. Biosens. Bioelectron. 2004, 20:967.
29. Kerman K., Vestergaard M., Nagatani N., Takamura Y., Tamiya E. Anal. Chem. 2006, 78:2182.
30. Watterson J.H., Piunno P.A.E., Wust C.C., Krull U.J. Langmuir 2000, 16:4984.
31. Kern W., Puotinen D.A. RCA Rev. 1970, 31:187.
32. Hill H.D., Vega R.A., Mirkin C.A. Anal. Chem. 2007, 79:9218.
33. Netzel T.L., Nafisi K., Zhao M., Lenhard J.R., Johnson I. J. Phys. Chem. 1995, 99:17936.
34. Petty J.T., Bordelon J.A., Robertson M.E. J. Phys. Chem. B 2000, 104:7221.
35. Algar W.R., Massey M., Krull U.J. J. Fluoresc. 2006, 16:555.
36. Norden B. Appl. Spectrosc. Rev. 1978, 14:157.
37. Larsson A., Carlsson C., Jonsson M., Albinsson B. J. Am. Chem. Soc. 1994, 116:8459.
38. Ediz V., Lee J.L., Armitage B.A., Yaron D. J. Phys. Chem. A 2008, 112:9692.
39. Matsuoka Y., Norden B. Biopolymers 1982, 21:2433.
40. Silva G.L., Ediz V., Yaron D., Armitage B.A. J. Am. Chem. Soc. 2007, 129:5710.
41. Carlsson C., Larsson A., Jonsson M., Albinsson B., Norden B. J. Phys. Chem. 1994, 98:10313.
42. Algar W.R., Massey M., Krull U.J. TrAC Trends Anal. Chem. 2009, 28:292.
43. Vallée-Bélisle A., Ricci F., Plaxco K.W. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:13802.
44. Vallée-Bélisle A., Ricci F., Plaxco K.W. J. Am. Chem. Soc. 2012, 134:2876.