Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology

European Journal of Plant Pathology

Volumn 134, Issue 3, 2012, Pages 561-597

  Gutiérrez Gutiérrez, Carlos ^a   Cantalapiedra Navarrete, Carolina ^a   Decraemer, Wilfrida ^b,c   Vovlas, Nicola ^d   Prior, Tom ^e   Rius, Juan E Palomares ^a   Castillo, Pablo ^a  

^a INSTITUTO DE AGRICULTURA SOSTENIBLE   (Spain)

^b ROYAL BELGIAN INSTITUTE OF NATURAL SCIENCES   (Belgium)

^c GHENT UNIVERSITY   (Belgium)

^d INSTITUTE FOR SUSTAINABLE PLANT PROTECTION   (Italy)

^e FOOD AND ENVIRONMENT RESEARCH AGENCY   (United Kingdom)

Author keywords

Bayesian inference; Cryptic species; Cytochrome c oxidase subunit 1 (COI); Dagger nematodes; Maximum likelihood; New geographic record; rDNA; Virus vector

Indexed keywords

CRYPSIS; MAXIMUM LIKELIHOOD ANALYSIS; MITOCHONDRIAL DNA; MOLECULAR ANALYSIS; MORPHOLOGY; MORPHOMETRY; NEMATODE; NEW SPECIES; PATHOGEN; PHYLOGENETICS; PHYLOGENY; PROTEIN; RECONSTRUCTION; TAXONOMY; VIRUS;

ITALY; SPAIN;

LONGIDORIDAE; NEMATODA; XIPHINEMA; XIPHINEMA AMERICANUM; XIPHINEMA PACHTAICUM; XIPHINEMA RIVESI; XIPHINEMA SANTOS;

EID: 84867141890     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-012-0039-9     Document Type: Article

References (80)

1. Auger, J., Leal, G., Magunacelaya, J. C., & Esterio, M. (2009). Xiphinema rivesi from Chile transmits tomato ringspot virus to cucumber. Plant Disease, 93, 971.
2. Barsi, L. (1989). The longidoridae (Nematoda: dorylaimida) in Yugoslavia. I. Nemtologia Mediterranea, 17, 97-108.
3. Barsi, L., & De Luca, F. (2008). Morphological and molecular characterisation of two putative Xiphinema americanum-group species, X. parasimile and X. simile (Nematoda: Dorylaimida) from Serbia. Nematology, 10, 15-25.
4. Barsi, L., & Lamberti, F. (2002). Morphometrics of three putative species of the Xiphinema americanum group (Nematoda: Dorylaimida) from the territory of the former Yugoslavia. Nematologia Mediterranea, 30, 59-72.
5. Bello, A., Robertson, L., Díez-Rojo, M. A., & Arias, M. (2005). A re-evaluation of the geographical distribution of quarantine nematodes reported in Spain. Nematologia Mediterranea, 33, 209-216.
6. Brown, D. J. F., & Halbrendt, J. M. (1992). The virus vector potential of Xiphinema americanum and related species. Journal of Nematology, 24, 584.
7. Castillo, P., Vovlas, N., Subbotin, S., & Troccoli, A. (2003). A new root-knot nematode, Meloidogyne baetica n. sp. (Nematoda: Heteroderidae), parasitizing wild olive in Southern Spain. Phytopathology, 93, 1093-1102.
8. Chen, D. Y., Fang, H., Yen, J. H., Cheng, Y. H., & Tsay, T. T. (2005). Differentiation of the Xiphinema americanum-group nematodes X. brevicollum, X. incognitum, X. diffusum and X. oxycaudatum in Taiwan by morphometrics and nuclear ribosomal DNA sequences. Nematology, 7, 713-725.
9. Cobb, N. A. (1913). New nematode genera found inhabiting fresh water and non-brackish soils. Journal of the Washington Academy of Science, 3, 432-444.
10. Coolen, W. A. (1979). Methods for extraction of Meloidogyne spp. and other nematodes from roots and soil. In F. Lamberti & C. E. Taylor (Eds.), Root-knot nematodes (Meloidogyne species). Systematics, biology and control (pp. 317-329). New York: Academic.
11. Coomans, A., Huys, R., Heyns, J., & Luc, M. (2001). Character analysis, phylogeny, and biogeography of the genus Xiphinema Cobb, 1973 (Nematoda, Longidoridae). Vol. 287, Annales du Musée Royal de l'Afrique Centrale (Zoologie), Tervuren, Belgique.
12. Dalmasso, A. (1969). Étude anatomique et taxonomique des genres Xiphinema, Longidorus et Paralongidorus (Nematoda: Dorylaimida). Mémoires du Muséum National d'Histoire Naturelle, Nouvelle Série, A. Zoologie, 61, 34-82.
13. Decraemer, W., & Robbins, R. T. (2007). The who, what and where of Longidoridae and Trichodoridae. Journal of Nematology, 39, 295-297.
14. Doucet, M. E., Ferraz, L. C. C. B., Magunacelaya, J. C., & Brown, D. J. F. (1998). The occurrence and distribution of longidorid nematodes in Latin America. Russian Journal of Nematology, 6, 111-128.
15. Ebsary, R. A., Potter, J. W., & Allen, W. R. (1984). Redescription of Xiphinema rivesi Dalmasso, 1969 and X. americanum Cobb, 1913 in Canada with a description of Xiphinema occiduum n. sp. (Nematoda, Longidoridae). Canadian Journal of Zoology, 62, 1696-1702.
16. Ebsary, R. A., Vrain, T. C., & Graham, M. B. (1989). Two new species of Xiphinema (Nematoda: Longidoridae) from British Columbia vineyards. Canadian Journal of Zoology, 67, 801-804.
17. ECBOL web (European Consortium for the Barcode of Life). http://www. ecbol. org/index. php?/pa/ge/welcome.
18. Fadaei, A. A., Coomans, A., & Kheiri, A. (2003). Three species of the Xiphinema americanum lineage (Nematoda: Longidoridae) from Iran. Nematology, 5, 453-461.
19. Flegg, J. J. M. (1967). Extraction of Xiphinema and Longidorus species from soil by a modification of Cobb's decanting and sieving technique. Annals of Applied Biology, 60, 429-437.
20. Georgi, L. L. (1988). Transmission of tomato ringspot virus by Xiphinema americanum and X. rivesi from New York apple orchards. Journal of Nematology, 20, 304-308.
21. Goodey, T. (1936). A new dorylaimid nematode Xiphinema radicicola, n. sp. Journal of Helminthology, 14, 69-72.
22. Gozel, U., Lamberti, F., Duncan, L., Agostinelli, A., Rosso, L., Nguyen, K., et al. (2006). Molecular and morphological consilience in the characterisation and delimitation of five nematode species from Florida belonging to the Xiphinema americanum-group. Nematology, 8, 521-532.
23. Gutiérrez-Gutiérrez, C., Palomares-Rius, J. E., Cantalapiedra-Navarrete, C., Landa, B. B., Esmenjaud, D., & Castillo, P. (2010). Molecular analysis and comparative morphology to resolve a complex of cryptic Xiphinema species. Zoologica Scripta, 39, 483-498.
24. Gutiérrez-Gutiérrez, C., Palomares-Rius, J. E., Cantalapiedra-Navarrete, C., Landa, B. B., & Castillo, P. (2011). Prevalence, polyphasic identification, and molecular phylogeny of dagger and needle nematodes infesting vineyards in southern Spain. European Journal of Plant Pathology, 129, 427-453.
25. Gutiérrez-Gutiérrez, C., Castillo, P., Cantalapiedra-Navarrete, C., Landa, B. B., Derycke, S., & Palomares-Rius, J. E. (2011). Genetic structure of Xiphinema pachtaicum and X. index populations based on mitochondrial DNA variation. Phytopathology, 101, 1168-1175.
26. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
27. He, Y., Subbotin, S., Rubtsova, T. V., Lamberti, F., Brown, D. J. F., & Moens, M. (2005). A molecular phylogenetic approach to Longidoridae (Nematoda: Dorylaimida). Nematology, 7, 111-124.
28. Heyns, J., & Coomans, A. (1994). Four species of the Xiphinema americanum group (Nematoda: Longidoridae) from Islands in the Western Indian Ocean. Nematologica, 40, 12-24.
29. Huelsenbeck, J. P., & Ronquist, F. (2001). MrBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
30. Jairajpuri, M. S., & Ahmad, W. (1992). Dorylaimida. Freeliving, predaceous and plant-parasitic nematodes. New Delhi: Oxford & IBH Publishing Co. 458 pp.
31. Kirjanova, E. S. (1951). Soil nematodes in cotton fields and in virgin soil of Golodnaya Steppe (Uzbekistan). [In Russian]. Trudy Zoologicheskogo Instituta Akademiya Nauk SSSR, 9, 625-657.
32. Kumari, S., Decraemer, W., De Luca, F., & Tiefenbrunner, W. (2010). Cytochrome c oxidase subunit 1 analysis of Xiphinema diversicaudatum, X. pachtaicum, X. simile and X. vuittenezi (Nematoda, Dorylaimida). European Journal of Plant Pathology, 127, 493-499.
33. Lamberti, F., & Bleve-Zacheo, T. (1979). Studies on Xiphinema americanum sensu lato with descriptions of fifteen new species (Nematoda, Longidoridae). Nematologia Mediterranea, 7, 51-106.
34. Lamberti, F., & Golden, A. M. (1986). On the identity of Xiphinema americanum sensu lato in the nematode collection of Gerald Thorne with description of X. thornei sp. n. Nematologia mediterranea, 14, 163-171.
35. Lamberti, F., & Ciancio, A. (1993). Diversity of Xiphinema americanum-group species and hierarchical cluster analysis of morphometrics. Journal of Nematology, 25, 332-343.
36. Lamberti, F., Choleva, B., & Agostinelli, A. (1983). Longidoridae from Bulgaria (Nematoda, Dorylaimida) with description of three new species of Longidorus and two new species of Xiphinema. Nematologia Mediterranea, 11, 49-72.
37. Lamberti, F., Ciancio, A., Agostinelli, A., & Coiro, M. I. (1991). Relationship between Xiphinema brevicolle and X. diffusum with a redescription of X. brevicolle and descriptions of three new species of Xiphinema (Nematoda, Dorylaimida). Nematologia mediterranea, 19, 311-326.
38. Lamberti, F., Lemos, R. M., Agostinelli, A., & D'Addabo, T. (1993). The Xiphinema americanumgroup in the vineyards of the Dão and Douro regions (Portugal) with description of two new species (Nematoda, Dorylaimida). Nematologia Mediterranea, 21, 215-225.
39. Lamberti, F., Bravo, M. A., Agostinelli, A., & Lemos, R. M. (1994). The Xiphinema americanum-group in Portugal with descriptions of four new species (Nematoda, Dorylaimida). Nematologia Mediterranea, 22, 189-218.
40. Lamberti, F., Agostinelli, A., & Radicci, V. (1996). Longidorid nematodes from Northern Egypt. Nematologia Mediterranea, 24, 307-339.
41. Lamberti, F., Molinari, S., Moens, M., & Brown, D. J. F. (2000). The Xiphinema americanum group. I. Putative species, their geographical occurrence and distribution, and regional polytomous identification keys for the group. Russian Journal of Nematology, 8, 65-84.
42. Lamberti, F., Kunz, P., Grunder, J., Molinari, S., de Luca, F., Agostinelli, A., & Radicci, V. (2001). Molecular characterization of six Longidorus species from switzerland with the description of Longidorus helveticus sp. n. (Nematoda, Dorylaimida). Nematologia Mediterranea, 29, 181-205.
43. Lazarova, S. S., Malloch, G., Oliveira, C. M. G., Hübschen, J., & Neilson, R. (2006). Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations. Journal of Nematology, 38, 404-410.
44. Loof, P. A. A., & Luc, M. (1990). A revised polytomous key for the identification of species of the genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) with exclusion of the X. americanum-group. Systematic Parasitology, 16, 36-66.
45. Loof, P. A. A., Luc, M., & Baujard, P. (1996). A revised polytomous key for the identification of species of the genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) with exclusion of the X. americanum-group: Supplement 2. Systematic Parasitology, 33, 23-29.
46. Lordello, L. G. E., & Costa, C. P. (1961). A new nematode parasite of coffee roots in Brazil. Revista Brasileira de Biologia, 21, 363-366.
47. Luc, M., Coomans, A., Loof, P. A. A., & Baujard, P. (1998). The Xiphinema americanum group (Nematoda: Longidoridae). 2. Observations on Xiphinema brevicollum Lordello & da Costa, 1961 and comments on the group. Fundamental and Applied Nematology, 21, 475-490.
48. Mekete, T., Gray, M. E., & Niblack, T. L. (2009). Distribution, morphological description, and molecular characterization of Xiphinema and Longidorous spp. associated with plants (Miscanthus spp. and Panicum virgatum) used for biofuels. Global Change Biology Bioenergy, 1, 257-266.
49. Meza, P., Aballay, E., & Hinrichsen, P. (2011). Molecular and morphological characterisation of species within the Xiphinema americanum-group (Dorylaimida: Longidoridae) from the central valley of Chile. Nematology, 13, 295-306.
50. Monteiro, A. R. (2010). Nomenclatorial note on Xiphinema brevicolle Lordello & Costa, 1961 (Nematoda: Longidoridae). Nematologia Brasileira, 34, 1-2.
51. Nasira, K., & Maqbool, M. A. (1994). Occurrence of virus vector nematodes in Pakistan. Pakistan Journal of Nematology, 12, 79-85.
52. Oliveira, C. M., Hubschen, J., Brown, D. J., Ferraz, L. C. C., Wright, F., & Neilson, R. (2004). Phylogenetic relationships among Xiphinema and Xiphidorus nematode species from Brazil inferred from 18S rDNA sequences. Journal of Nematology, 36, 153-159.
53. Oliveira, C. M. G., Fenton, B., Malloch, G., Brown, D. J. F., & Neilson, R. (2005). Development of species-specific primers for the ectoparasitic nematodes species X. brevicolle, X. diffusum, X. elongatum, X. ifacolum and X. longicaudatum (Nematoda: Longidoridae) based on ribosomal DNA sequences. Annals of Applied Biology, 146, 281-288.
54. Oliveira, C. M. G., Ferraz, L. C. C. B., & Neilson, R. (2006). Xiphinema krugi, species complex or complex of cryptic species? Journal of Nematology, 38, 418-428.
55. Page, R. D. (1996). TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences, 12, 357-358.
56. Palomares-Rius, J. E., Subbotin, S. A., Landa, B. B., Vovlas, N., & Castillo, P. (2008). Description and molecular characterisation of Paralongidorus litoralis sp. n. and P. paramaximus Heyns, 1965 (Nematoda: Longidoridae) from Spain. Nematology, 10, 87-101.
57. Palomares-Rius, J. E., Subbotin, S. A., Liébanas, G., Landa, B. B., & Castillo, P. (2009). Eutylenchus excretorius Ebsary Eveleigh, 1981 (Nematoda: Tylodorinae) from Spain with approaches to molecular phylogeny of related genera. Nematology, 11, 343-354.
58. Peña-Santiago, R., Abolafia, J., Guerrero, P., Liébanas, G., & Peralta, M. (2006). Soil and freshwater nematodes of the Iberian fauna: a synthesis. Graellsia, 62, 179-98.
59. Posada, D. (2008). jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256.
60. Robbins, R. T. (1993). Distribution of Xiphinema americanum and related species in North America. Journal of Nematology, 25, 344-348.
61. Robbins, R. T., & Brown, D. J. F. (1991). Comments on the taxonomy, occurrence and distribution of Longidoridae (Nematoda) in North America. Nematologica, 37, 395-419.
62. Romanenko, N. D. (1981). Discovery of a new species of nematode Xiphinema paramonovi n. sp. (Nematoda: Longidoridae) in the territory of the Soviet Union. [1st Conference (9th meeting) on nematodes of plants and insects in soil and water] Tashkent, September 16th-18th, (pp. 68-69).
63. Sakai, H., Takeda, A., & Mizukubo, T. (2011). First report of Xiphinema brevicolle Lordello et Costa, 1961 (Nematoda, Longidoridae) in Japan. ZooKeys, 135, 21-40.
64. Seinhorst, J. W. (1966). Killing nematodes for taxonomic study with hot f. a. 4: 1. Nematologica, 12, 178.
65. Sharma, S. B., McKirdy, S., Mackie, A., & Lamberti, F. (2003). First record of Xiphinema rivesi associated with grape vines in Western Australia. Nematologia Mediterranea, 31, 87.
66. Siddiqi, M. R. (1961). On Xiphinema opisthohysterum, n. sp., and X. pratense Loos, 1949, two Dorylaimid nematodes attacking fruit trees in India. Zeitschrift für Parasitenkunde, 20, 457-465.
67. Širca, S., Stare, B. G., Plesko, I. M., Marn, M. V., Urek, G., & Javornik, B. (2007). Xiphinema rivesi from Slovenia transmit Tobacco ringspot virus and Tomato ringspot virus to cucumber bait plants. Plant Disease, 91, 770-770.
68. Sturhan, D. (1983). Description of two new Xiphinema species from Portugal, with notes on X. pachtaicum and X. opisthohysterum (Nematoda, Longidoridae). Nematologica, 29, 270-283.
69. Swofford, D. L. (2003). PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4. 0b 10. Sunderland: Sinauer Associates.
70. Tarjan, A. C. (1969). Variation within the Xiphinema americanum group (Nematoda: Longidoridae). Nematologica, 15, 241-252.
71. Taylor, C. E., & Brown, D. J. F. (1997). Nematode vectors of plant viruses. Wallingford: CABI. 296 pp.
72. Téliz, D., Landa, B. B., Rapoport, H. F., Pérez Camacho, F., Jiménez-Díaz, R. M., & Castillo, P. (2007). Plant-parasitic nematodes infecting grapevine in southern Spain and susceptible reaction to root-knot nematodes of rootstocks reported as moderately resistant. Plant Disease, 91, 1147-1154.
73. Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
74. Tulaganov, A. T. (1938). The fauna of nematodes of cotton and surrounding soil in Katta-Kurgan distric of Uzbek SSR. Uzbekskogo Gosundarstvennogo Universiteta, 12, 1-25.
75. Urek, G., Širca, S., & Karssen, G. (2005). Morphometrics of Xiphinema rivesi Dalmasso, 1969 (Nematoda: Dorylaimida) from Slovenia. Russian Journal of Nematology, 13, 13-17.
76. Vrain, T. C. (1993). Restriction fragment length polymorphism separates species of the Xiphinema americanum group. Journal of Nematology, 25, 361. 364.
77. Wang, X., Bosselut, N., Castagnone, C., Voisin, R., Abad, P., & Esmenjaud, D. (2003). Multiplex polymerase chain reaction identification of single individuals of the Longidorid nematodes Xiphinema index, X. diversicaudatum, X. vuittenezi, and X. italiae using specific primers from ribosomal genes. Phytopathology, 93, 160-166.
78. Wang, S., & Wu, X. (1992). Two species of Xiphinema Cobb, 1913 (Dorylaimida: Longidoridae) from around grape roots in China. Acta Phytopathologica Sinica, 22, 117-123.
79. Wu, Y., Zheng, J., & Robbins, R. T. (2007). Molecular characterization of a Xiphinema hunaniense population with morphometric data of all four juvenile stages. Journal of Nematology, 39, 37-42.
80. Ye, W., Szalanski, A. L., & Robbins, R. T. (2004). Phylogenetic relationships and genetic variation in Longidorus and Xiphinema species (Nematoda: Longidoridae) using ITS1 sequences of nuclear ribosomal DNA. Journal of Nematology, 36, 14-19.