-
1
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., etal. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006-0008.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 2006-0008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
-
2
-
-
1842591130
-
The regulation of bacterial transcription initiation
-
Browning, D.F., and Busby, S.J. (2004) The regulation of bacterial transcription initiation. Nat Rev Microbiol 2: 57-65.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 57-65
-
-
Browning, D.F.1
Busby, S.J.2
-
3
-
-
63249132195
-
DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes
-
Butala, M., Busby, S.J.W., and Lee, D.J. (2009a) DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes. Nucleic Acids Res 37: e37.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Butala, M.1
Busby, S.J.W.2
Lee, D.J.3
-
4
-
-
58149518390
-
The bacterial LexA transcriptional repressor
-
Butala, M., Zgur-Bertok, D., and Busby, S.J.W. (2009b) The bacterial LexA transcriptional repressor. Cell Mol Life Sci 66: 82-93.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 82-93
-
-
Butala, M.1
Zgur-Bertok, D.2
Busby, S.J.W.3
-
5
-
-
80055096030
-
Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response
-
Butala, M., Klose, D., Hodnik, V., Rems, A., Podlesek, Z., Klare, J.P., etal. (2011) Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response. Nucleic Acids Res 39: 6546-6557.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6546-6557
-
-
Butala, M.1
Klose, D.2
Hodnik, V.3
Rems, A.4
Podlesek, Z.5
Klare, J.P.6
-
6
-
-
33947368999
-
Colicin biology
-
Cascales, E., Buchanan, S.K., Duche, D., Kleanthous, C., Lloubes, R., Postle, K., etal. (2007) Colicin biology. Microbiol Mol Biol Rev 71: 158-229.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, pp. 158-229
-
-
Cascales, E.1
Buchanan, S.K.2
Duche, D.3
Kleanthous, C.4
Lloubes, R.5
Postle, K.6
-
7
-
-
0035023305
-
Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli
-
Courcelle, J., Khodursky, A., Peter, B., Brown, P.O., and Hanawalt, P.C. (2001) Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics 158: 41-64.
-
(2001)
Genetics
, vol.158
, pp. 41-64
-
-
Courcelle, J.1
Khodursky, A.2
Peter, B.3
Brown, P.O.4
Hanawalt, P.C.5
-
8
-
-
0019982669
-
Direct participation of lexA protein in repression of colicin E1 synthesis
-
Ebina, Y., Kishi, F., and Nakazawa, A. (1982) Direct participation of lexA protein in repression of colicin E1 synthesis. J Bacteriol 150: 1479-1481.
-
(1982)
J Bacteriol
, vol.150
, pp. 1479-1481
-
-
Ebina, Y.1
Kishi, F.2
Nakazawa, A.3
-
9
-
-
0021100289
-
LexA protein is a repressor of the colicin E1 gene
-
Ebina, Y., Takahara, Y., Kishi, F., Nakazawa, A., and Brent, R. (1983) LexA protein is a repressor of the colicin E1 gene. J Biol Chem 258: 13258-13261.
-
(1983)
J Biol Chem
, vol.258
, pp. 13258-13261
-
-
Ebina, Y.1
Takahara, Y.2
Kishi, F.3
Nakazawa, A.4
Brent, R.5
-
10
-
-
0029935770
-
Increased production of colicin E1 in stationary phase
-
Eraso, J.M., Chidambaram, M., and Weinstock, G.M. (1996) Increased production of colicin E1 in stationary phase. J Bacteriol 178: 1928-1935.
-
(1996)
J Bacteriol
, vol.178
, pp. 1928-1935
-
-
Eraso, J.M.1
Chidambaram, M.2
Weinstock, G.M.3
-
11
-
-
0014125616
-
Comparative study of the events associated with colicin induction
-
Herschman, H.R., and Helinski, D.R. (1967) Comparative study of the events associated with colicin induction. J Bacteriol 94: 691-699.
-
(1967)
J Bacteriol
, vol.94
, pp. 691-699
-
-
Herschman, H.R.1
Helinski, D.R.2
-
12
-
-
21444452268
-
Sublethal concentrations of ciprofloxacin induce bacteriocin synthesis in Escherichia coli
-
Jerman, B., Butala, M., and Zgur-Bertok, D. (2005) Sublethal concentrations of ciprofloxacin induce bacteriocin synthesis in Escherichia coli. Antimicrob Agents Chemother 49: 3087-3090.
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 3087-3090
-
-
Jerman, B.1
Butala, M.2
Zgur-Bertok, D.3
-
13
-
-
78149289114
-
Genes regulated by the Escherichia coli SOS repressor LexA exhibit heterogeneous expression
-
Kamensek, S., Podlesek, Z., Gillor, O., and Zgur-Bertok, D. (2010) Genes regulated by the Escherichia coli SOS repressor LexA exhibit heterogeneous expression. BMC Microbiol 10: 283.
-
(2010)
BMC Microbiol
, vol.10
, pp. 283
-
-
Kamensek, S.1
Podlesek, Z.2
Gillor, O.3
Zgur-Bertok, D.4
-
14
-
-
78449293752
-
Swimming against the tide: progress and challenges in our understanding of colicin translocation
-
Kleanthous, C. (2010) Swimming against the tide: progress and challenges in our understanding of colicin translocation. Nat Rev Microbiol 8: 843-848.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 843-848
-
-
Kleanthous, C.1
-
15
-
-
0032718712
-
Transcription regulation of the colicin K cka gene reveals induction of colicin synthesis by differential responses to environmental signals
-
Kuhar, I., and Zgur-Bertok, D. (1999) Transcription regulation of the colicin K cka gene reveals induction of colicin synthesis by differential responses to environmental signals. J Bacteriol 181: 7373-7380.
-
(1999)
J Bacteriol
, vol.181
, pp. 7373-7380
-
-
Kuhar, I.1
Zgur-Bertok, D.2
-
16
-
-
84867061721
-
Activation of transcription in bacteria
-
Lee, D.J., Minchin, S.D., and Busby, S.J.W. (2012) Activation of transcription in bacteria. Annu Rev Microbiol 66: 125-152.
-
(2012)
Annu Rev Microbiol
, vol.66
, pp. 125-152
-
-
Lee, D.J.1
Minchin, S.D.2
Busby, S.J.W.3
-
17
-
-
0033819140
-
Programmed death in bacteria
-
Lewis, K. (2000) Programmed death in bacteria. Microbiol Mol Biol Rev 64: 503-514.
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, pp. 503-514
-
-
Lewis, K.1
-
18
-
-
14744294785
-
Iron-sulfur-protein biogenesis in eukaryotes
-
Lill, R., and Muhlenhoff, U. (2005) Iron-sulfur-protein biogenesis in eukaryotes. Trends Biochem Sci 30: 133-141.
-
(2005)
Trends Biochem Sci
, vol.30
, pp. 133-141
-
-
Lill, R.1
Muhlenhoff, U.2
-
19
-
-
0025810994
-
Mechanism of specific LexA cleavage: autodigestion and the role of RecA coprotease
-
Little, J.W. (1991) Mechanism of specific LexA cleavage: autodigestion and the role of RecA coprotease. Biochimie 73: 411-421.
-
(1991)
Biochimie
, vol.73
, pp. 411-421
-
-
Little, J.W.1
-
20
-
-
0022597009
-
The promoters of the genes for colicin production, release and immunity in the ColA plasmid: effects of convergent transcription and Lex A protein
-
Lloubes, R., Baty, D., and Lazdunski, C. (1986) The promoters of the genes for colicin production, release and immunity in the ColA plasmid: effects of convergent transcription and Lex A protein. Nucleic Acids Res 14: 2621-2636.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 2621-2636
-
-
Lloubes, R.1
Baty, D.2
Lazdunski, C.3
-
21
-
-
0027120805
-
Broad host range plasmids carrying the Escherichia coli lactose and galactose operons
-
Lodge, J., Fear, J., Busby, S., Gunasekaran, P., and Kamini, N.R. (1992) Broad host range plasmids carrying the Escherichia coli lactose and galactose operons. FEMS Microbiol Lett 74: 271-276.
-
(1992)
FEMS Microbiol Lett
, vol.74
, pp. 271-276
-
-
Lodge, J.1
Fear, J.2
Busby, S.3
Gunasekaran, P.4
Kamini, N.R.5
-
22
-
-
78650617472
-
Competitive interactions in Escherichia coli populations: the role of bacteriocins
-
Majeed, H., Gillor, O., Kerr, B., and Riley, M.A. (2011) Competitive interactions in Escherichia coli populations: the role of bacteriocins. ISME J 5: 71-81.
-
(2011)
ISME J
, vol.5
, pp. 71-81
-
-
Majeed, H.1
Gillor, O.2
Kerr, B.3
Riley, M.A.4
-
24
-
-
6044232024
-
Diversion of the metabolic flux from pyruvate dehydrogenase to pyruvate oxidase decreases oxidative stress during glucose metabolism in nongrowing Escherichia coli cells incubated under aerobic, phosphate starvation conditions
-
Moreau, P.L. (2004) Diversion of the metabolic flux from pyruvate dehydrogenase to pyruvate oxidase decreases oxidative stress during glucose metabolism in nongrowing Escherichia coli cells incubated under aerobic, phosphate starvation conditions. J Bacteriol 186: 7364-7368.
-
(2004)
J Bacteriol
, vol.186
, pp. 7364-7368
-
-
Moreau, P.L.1
-
25
-
-
33947431625
-
Heterogeneity in expression of the Escherichia coli colicin K activity gene cka is controlled by the SOS system and stochastic factors
-
Mrak, P., Podlesek, Z., van Putten, J.P., and Zgur-Bertok, D. (2007) Heterogeneity in expression of the Escherichia coli colicin K activity gene cka is controlled by the SOS system and stochastic factors. Mol Genet Genomics 277: 391-401.
-
(2007)
Mol Genet Genomics
, vol.277
, pp. 391-401
-
-
Mrak, P.1
Podlesek, Z.2
van Putten, J.P.3
Zgur-Bertok, D.4
-
26
-
-
0037226702
-
A cka-gfp transcriptional fusion reveals that the colicin K activity gene is induced in only 3 percent of the population
-
Mulec, J., Podlesek, Z., Mrak, P., Kopitar, A., Ihan, A., and Zgur-Bertok, D. (2003) A cka-gfp transcriptional fusion reveals that the colicin K activity gene is induced in only 3 percent of the population. J Bacteriol 185: 654-659.
-
(2003)
J Bacteriol
, vol.185
, pp. 654-659
-
-
Mulec, J.1
Podlesek, Z.2
Mrak, P.3
Kopitar, A.4
Ihan, A.5
Zgur-Bertok, D.6
-
27
-
-
61349134073
-
Sequence-specific binding to a subset of IscR-regulated promoters does not require IscR Fe-S cluster ligation
-
Nesbit, A.D., Giel, J.L., Rose, J.C., and Kiley, P.J. (2009) Sequence-specific binding to a subset of IscR-regulated promoters does not require IscR Fe-S cluster ligation. J Mol Biol 387: 28-41.
-
(2009)
J Mol Biol
, vol.387
, pp. 28-41
-
-
Nesbit, A.D.1
Giel, J.L.2
Rose, J.C.3
Kiley, P.J.4
-
28
-
-
78349231296
-
IscR regulates RNase LS activity by repressing rnlA transcription
-
Otsuka, Y., Miki, K., Koga, M., Katayama, N., Morimoto, W., Takahashi, Y., and Yonesaki, T. (2010) IscR regulates RNase LS activity by repressing rnlA transcription. Genetics 185: 823-830.
-
(2010)
Genetics
, vol.185
, pp. 823-830
-
-
Otsuka, Y.1
Miki, K.2
Koga, M.3
Katayama, N.4
Morimoto, W.5
Takahashi, Y.6
Yonesaki, T.7
-
29
-
-
0023442596
-
Temporal control of colicin E1 induction
-
Salles, B., Weisemann, J.M., and Weinstock, G.M. (1987) Temporal control of colicin E1 induction. J Bacteriol 169: 5028-5034.
-
(1987)
J Bacteriol
, vol.169
, pp. 5028-5034
-
-
Salles, B.1
Weisemann, J.M.2
Weinstock, G.M.3
-
30
-
-
0035909963
-
IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins
-
Schwartz, C.J., Giel, J.L., Patschkowski, T., Luther, C., Ruzicka, F.J., Beinert, H., and Kiley, P.J. (2001) IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins. Proc Natl Acad Sci USA 98: 14895-14900.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 14895-14900
-
-
Schwartz, C.J.1
Giel, J.L.2
Patschkowski, T.3
Luther, C.4
Ruzicka, F.J.5
Beinert, H.6
Kiley, P.J.7
-
31
-
-
0034911990
-
Genetic analysis of the isc operon in Escherichia coli involved in the biogenesis of cellular iron-sulfur proteins
-
Tokumoto, U., and Takahashi, Y. (2001) Genetic analysis of the isc operon in Escherichia coli involved in the biogenesis of cellular iron-sulfur proteins. J Biochem 130: 63-71.
-
(2001)
J Biochem
, vol.130
, pp. 63-71
-
-
Tokumoto, U.1
Takahashi, Y.2
-
32
-
-
27644580858
-
Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites
-
Wade, J.T., Reppas, N.B., Church, G.M., and Struhl, K. (2005) Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites. Genes Dev 19: 2619-2630.
-
(2005)
Genes Dev
, vol.19
, pp. 2619-2630
-
-
Wade, J.T.1
Reppas, N.B.2
Church, G.M.3
Struhl, K.4
-
33
-
-
60849099323
-
IscR controls iron-dependent biofilm formation in Escherichia coli by regulating type I fimbria expression
-
Wu, Y., and Outten, F.W. (2009) IscR controls iron-dependent biofilm formation in Escherichia coli by regulating type I fimbria expression. J Bacteriol 191: 1248-1257.
-
(2009)
J Bacteriol
, vol.191
, pp. 1248-1257
-
-
Wu, Y.1
Outten, F.W.2
-
34
-
-
77955075326
-
Posttranscriptional repression of the cel gene of the ColE7 operon by the RNA-binding protein CsrA of Escherichia coli
-
Yang, T.Y., Sung, Y.M., Lei, G.S., Romeo, T., and Chak, K.F. (2010) Posttranscriptional repression of the cel gene of the ColE7 operon by the RNA-binding protein CsrA of Escherichia coli. Nucleic Acids Res 38: 3936-3951.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3936-3951
-
-
Yang, T.Y.1
Sung, Y.M.2
Lei, G.S.3
Romeo, T.4
Chak, K.F.5
|