Of Mice and Men: Divergence of Gene Expression Patterns in Kidney

PLoS ONE

Volumn 7, Issue 10, 2012, Pages

  Cheval, Lydie ^a,b   Pierrat, Fabien ^c   Rajerison, Rabary ^a,b   Piquemal, David ^c   Doucet, Alain ^a,b  

^a INSERM   (France)

^b CNRS   (France)

^c Skuld Tech   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLUSTER ANALYSIS; CONTROLLED STUDY; GENE EXPRESSION PROFILING; GENE FUNCTION; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; GLOMERULUS; HOUSEKEEPING GENE; HUMAN; KIDNEY FUNCTION; KIDNEY STRUCTURE; MALE; MOUSE; NEPHRON; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PHENOTYPE; QUANTITATIVE ANALYSIS;

ANIMALS; CLUSTER ANALYSIS; DATABASES, GENETIC; HUMANS; KIDNEY; MICE; SPECIES SPECIFICITY; TRANSCRIPTOME;

MUS;

EID: 84867047842     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0046876     Document Type: Article

References (27)

1. Bronson SK, Smithies O, (1994) Altering mice by homologous recombination using embryonic stem cells. J Biol Chem 269: 27155-27158.
2. Lorenz JN, Baird NR, Judd LM, Noonan WT, Andringa A, et al. (2002) Impaired renal NaCl absorption in mice lacking the ROMK potassium channel, a model for type II Bartter's syndrome. J Biol Chem 277: 37871-37880.
3. Nomura N, Tajima M, Sugawara N, Morimoto T, Kondo Y, et al. (2011) Generation and analyses of R8L barttin knockin mouse. Am J Physiol Renal Physiol 301: F297-307.
4. Schultheis PJ, Lorenz JN, Meneton P, Nieman ML, Riddle TM, et al. (1998) Phenotype resembling Gitelman's syndrome in mice lacking the apical Na+-Cl- cotransporter of the distal convoluted tubule. J Biol Chem 273: 29150-29155.
5. Brawand D, Soumillon M, Necsulea A, Julien P, Csardi G, et al. (2011) The evolution of gene expression levels in mammalian organs. Nature 478: 343-348.
6. Chan ET, Quon GT, Chua G, Babak T, Trochesset M, et al. (2009) Conservation of core gene expression in vertebrate tissues. J Biol 8: 33.
7. Su AI, Cooke MP, Ching KA, Hakak Y, Walker JR, et al. (2002) Large-scale analysis of the human and mouse transcriptomes. Proc Natl Acad Sci U S A 99: 4465-4470.
8. Chabardes-Garonne D, Mejean A, Aude JC, Cheval L, Di Stefano A, et al. (2003) A panoramic view of gene expression in the human kidney. Proc Natl Acad Sci U S A 100: 13710-13715.
9. Cheval L, Pierrat F, Dossat C, Genete M, Imbert-Teboul M, et al. (2011) Atlas of gene expression in the mouse kidney: new features of glomerular parietal cells. Physiol Genomics 43: 161-173.
10. Cheval L, Duong Van Huyen JP, Bruneval P, Verbavatz JM, Elalouf JM, et al. (2004) Plasticity of mouse renal collecting duct in response to potassium depletion. Physiol Genomics 19: 61-73.
11. Virlon B, Cheval L, Buhler JM, Billon E, Doucet A, et al. (1999) Serial microanalysis of renal transcriptomes. Proc Natl Acad Sci U S A 96: 15286-15291.
12. Makova KD, Li WH, (2003) Divergence in the spatial pattern of gene expression between human duplicate genes. Genome Res 13: 1638-1645.
13. Jordan IK, Marino-Ramirez L, Koonin EV, (2005) Evolutionary significance of gene expression divergence. Gene 345: 119-126.
14. Liao BY, Zhang J, (2006) Evolutionary conservation of expression profiles between human and mouse orthologous genes. Mol Biol Evol 23: 530-540.
15. Pereira V, Waxman D, Eyre-Walker A, (2009) A problem with the correlation coefficient as a measure of gene expression divergence. Genetics 183: 1597-1600.
16. Piasecka B, Robinson-Rechavi M, Bergmann S, (2012) Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human. Bioinformatics 28: 1865-1872.
17. Yanai I, Benjamin H, Shmoish M, Chalifa-Caspi V, Shklar M, et al. (2005) Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 21: 650-659.
18. Blechschmidt S, Haufe V, Benndorf K, Zimmer T, (2008) Voltage-gated Na+ channel transcript patterns in the mammalian heart are species-dependent. Prog Biophys Mol Biol 98: 309-318.
19. Harries LW, Brown JE, Gloyn AL, (2009) Species-specific differences in the expression of the HNF1A, HNF1B and HNF4A genes. PLoS One 4: e7855.
20. Mattes WB, Daniels KK, Summan M, Xu ZA, Mendrick DL, (2006) Tissue and species distribution of the glutathione pathway transcriptome. Xenobiotica 36: 1081-1121.
21. Smeets B, Dijkman HB, Wetzels JF, Steenbergen EJ, (2006) Lessons from studies on focal segmental glomerulosclerosis: an important role for parietal epithelial cells? J Pathol 210: 263-272.
22. Yanai I, Graur D, Ophir R, (2004) Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control. Omics 8: 15-24.
23. Bleasby K, Castle JC, Roberts CJ, Cheng C, Bailey WJ, et al. (2006) Expression profiles of 50 xenobiotic transporter genes in humans and pre-clinical species: a resource for investigations into drug disposition. Xenobiotica 36: 963-988.
24. Piquemal D, Commes T, Manchon L, Lejeune M, Ferraz C, et al. (2002) Transcriptome analysis of monocytic leukemia cell differentiation. Genomics 80: 361-371.
25. Eisen MB, Spellman PT, Brown PO, Botstein D, (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95: 14863-14868.
26. Blake JA, Bult CJ, Kadin JA, Richardson JE, Eppig JT, (2011) The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res 39: D842-848.
27. Schnermann J, Chou CL, Ma T, Traynor T, Knepper MA, et al. (1998) Defective proximal tubular fluid reabsorption in transgenic aquaporin-1 null mice. Proc Natl Acad Sci U S A 95: 9660-9664.