-
1
-
-
84879884854
-
-
MIPAV
-
MIPAV, 2012. http://mipav.cit.nih.gov/.
-
(2012)
-
-
-
2
-
-
34447533689
-
Morphometric analysis of the C57BL/6J mouse brain
-
Badea A., Ali-Sharief A.A., Johnson G.A. Morphometric analysis of the C57BL/6J mouse brain. NeuroImage 2007, 37:683-693.
-
(2007)
NeuroImage
, vol.37
, pp. 683-693
-
-
Badea, A.1
Ali-Sharief, A.A.2
Johnson, G.A.3
-
3
-
-
84974688494
-
Co-registration of histological, optical and MR data of the human brain
-
Bardinet é., Ourselin S., Dormont D., Malandain G., Tandé D., Parain K., Ayache N., Yelnik J. Co-registration of histological, optical and MR data of the human brain. International conference on medical image computing and computer-assisted intervention 2002, 548-555.
-
(2002)
International conference on medical image computing and computer-assisted intervention
, pp. 548-555
-
-
Bardinet, É.1
Ourselin, S.2
Dormont, D.3
Malandain, G.4
Tandé, D.5
Parain, K.6
Ayache, N.7
Yelnik, J.8
-
4
-
-
41949129591
-
An assessment of methods for aligning two-dimensional microscope sections to create image volumes
-
Beare R., Richards K., Murphy S., Petrou S., Reutens D.C. An assessment of methods for aligning two-dimensional microscope sections to create image volumes. J Neurosci Methods 2008, 170:332-344.
-
(2008)
J Neurosci Methods
, vol.170
, pp. 332-344
-
-
Beare, R.1
Richards, K.2
Murphy, S.3
Petrou, S.4
Reutens, D.C.5
-
5
-
-
84868338857
-
Three-dimensional computerized reconstruction from serial sections: cell populations, regions, and whole brain
-
Bjaalie J.G., Leergaard T.B. Three-dimensional computerized reconstruction from serial sections: cell populations, regions, and whole brain. Neuroanatomical Tract-Tracing 2006, p. 530-65.
-
(2006)
Neuroanatomical Tract-Tracing
, pp. 530-65
-
-
Bjaalie, J.G.1
Leergaard, T.B.2
-
6
-
-
0344241066
-
Mapping of histologically identified long fiber tracts in human cerebral hemispheres to the MRI volume of a reference brain: position and spatial variability of the optic radiation
-
Bürgel U., Schormann T., Schleicher A., Zilles K. Mapping of histologically identified long fiber tracts in human cerebral hemispheres to the MRI volume of a reference brain: position and spatial variability of the optic radiation. NeuroImage 1999, 10:489-499.
-
(1999)
NeuroImage
, vol.10
, pp. 489-499
-
-
Bürgel, U.1
Schormann, T.2
Schleicher, A.3
Zilles, K.4
-
7
-
-
80054117687
-
Super-resolution track-density imaging studies of mouse brain: comparison to histology
-
Calamante F., Tournier J.-D., Kurniawan N.D., Yang Z., Gyengesi E., Galloway G.J., Reutens D.C., Connelly A. Super-resolution track-density imaging studies of mouse brain: comparison to histology. NeuroImage 2012, 59:286-296.
-
(2012)
NeuroImage
, vol.59
, pp. 286-296
-
-
Calamante, F.1
Tournier, J.-D.2
Kurniawan, N.D.3
Yang, Z.4
Gyengesi, E.5
Galloway, G.J.6
Reutens, D.C.7
Connelly, A.8
-
8
-
-
51049117909
-
Three-dimensional reconstruction of serial histological mouse brain sections
-
Chakravarty M.M., Bedell B.J., Zehntner S.P., Evans A.C., Collins D.L. Three-dimensional reconstruction of serial histological mouse brain sections. The 5th IEEE international symposium on biomedical imaging: from nano to macro 2008, 987-990.
-
(2008)
The 5th IEEE international symposium on biomedical imaging: from nano to macro
, pp. 987-990
-
-
Chakravarty, M.M.1
Bedell, B.J.2
Zehntner, S.P.3
Evans, A.C.4
Collins, D.L.5
-
9
-
-
33645127544
-
The creation of a brain atlas for image guided neurosurgery using serial histological data
-
Chakravarty M.M., Bertrand G., Hodge C.P., Sadikot A.F., Collins D.L. The creation of a brain atlas for image guided neurosurgery using serial histological data. NeuroImage 2006, 30:359-376.
-
(2006)
NeuroImage
, vol.30
, pp. 359-376
-
-
Chakravarty, M.M.1
Bertrand, G.2
Hodge, C.P.3
Sadikot, A.F.4
Collins, D.L.5
-
10
-
-
54249099923
-
Towards a validation of atlas warping techniques
-
Chakravarty M.M., Sadikot A.F., Germann J., Bertrand G., Collins D.L. Towards a validation of atlas warping techniques. Med Image Anal 2008, 12:713-726.
-
(2008)
Med Image Anal
, vol.12
, pp. 713-726
-
-
Chakravarty, M.M.1
Sadikot, A.F.2
Germann, J.3
Bertrand, G.4
Collins, D.L.5
-
11
-
-
79953037810
-
Smoothness-guided 3-D reconstruction of 2-D histological images
-
Cifor A., Bai L., Pitiot A. Smoothness-guided 3-D reconstruction of 2-D histological images. Neuroimage 2011, 56:197-211.
-
(2011)
Neuroimage
, vol.56
, pp. 197-211
-
-
Cifor, A.1
Bai, L.2
Pitiot, A.3
-
13
-
-
34250666634
-
Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in vivo MRI for whole baboon brain
-
Dauguet J., Delzescaux T., Conde F., Mangin J.F., Ayache N., Hantraye P., Frouin V. Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in vivo MRI for whole baboon brain. J Neurosci Methods 2007, 164:191-204.
-
(2007)
J Neurosci Methods
, vol.164
, pp. 191-204
-
-
Dauguet, J.1
Delzescaux, T.2
Conde, F.3
Mangin, J.F.4
Ayache, N.5
Hantraye, P.6
Frouin, V.7
-
14
-
-
14044262855
-
Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
-
Denk W., Horstmann H. Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. PLoS Biol 2004, 2:1900-1909.
-
(2004)
PLoS Biol
, vol.2
, pp. 1900-1909
-
-
Denk, W.1
Horstmann, H.2
-
15
-
-
33747181686
-
3D volume reconstruction of a mouse brain from histological sections using warp filtering
-
Ju T., Warren J., Carson J., Bello M., Kakadiaris I., Chiu W., Thaller C., Eichele G. 3D volume reconstruction of a mouse brain from histological sections using warp filtering. J Neurosci Methods 2006, 156:84-100.
-
(2006)
J Neurosci Methods
, vol.156
, pp. 84-100
-
-
Ju, T.1
Warren, J.2
Carson, J.3
Bello, M.4
Kakadiaris, I.5
Chiu, W.6
Thaller, C.7
Eichele, G.8
-
16
-
-
0030810112
-
Mutual information for automated unwarping of rat brain autoradiographs
-
Kim B., Boes J.L., Frey K.A., Meyer C.R. Mutual information for automated unwarping of rat brain autoradiographs. NeuroImage 1997, 5:31-40.
-
(1997)
NeuroImage
, vol.5
, pp. 31-40
-
-
Kim, B.1
Boes, J.L.2
Frey, K.A.3
Meyer, C.R.4
-
17
-
-
77952419555
-
Validation of MRI-based 3D digital atlas registration with histological and autoradiographic volumes: an anatomofunctional transgenic mouse brain imaging study
-
Lebenberg J., Hérard A.S., Dubois A., Dauguet J., Frouin V., Dhenain M., Hantraye P., Delzescaux T. Validation of MRI-based 3D digital atlas registration with histological and autoradiographic volumes: an anatomofunctional transgenic mouse brain imaging study. NeuroImage 2010, 51:1037-1046.
-
(2010)
NeuroImage
, vol.51
, pp. 1037-1046
-
-
Lebenberg, J.1
Hérard, A.S.2
Dubois, A.3
Dauguet, J.4
Frouin, V.5
Dhenain, M.6
Hantraye, P.7
Delzescaux, T.8
-
18
-
-
61649098614
-
Enhancement of histological volumes through averaging and their use for the analysis of magnetic resonance images
-
Li X., Yankeelov T.E., Rosen G.D., Gore J.C., Dawant B.M. Enhancement of histological volumes through averaging and their use for the analysis of magnetic resonance images. Magn Reson Imaging 2009, 27:401-416.
-
(2009)
Magn Reson Imaging
, vol.27
, pp. 401-416
-
-
Li, X.1
Yankeelov, T.E.2
Rosen, G.D.3
Gore, J.C.4
Dawant, B.M.5
-
19
-
-
0242353108
-
The informatics of a C57BL/6J mouse brain atlas
-
MacKenzie-Graham A., Jones E., Shattuck D., Dinov I., Bota M., Toga A. The informatics of a C57BL/6J mouse brain atlas. Neuroinformatics 2003, 1:397-410.
-
(2003)
Neuroinformatics
, vol.1
, pp. 397-410
-
-
MacKenzie-Graham, A.1
Jones, E.2
Shattuck, D.3
Dinov, I.4
Bota, M.5
Toga, A.6
-
20
-
-
10744223881
-
A multimodal, multidimensional atlas of the C57BL/6J mouse brain
-
MacKenzie-Graham A., Lee E.F., Dinov I.D., Bota M., Shattuck D.W., Ruffins S., Yuan H., Konstantinidis F., Pitiot A., Ding Y. A multimodal, multidimensional atlas of the C57BL/6J mouse brain. J Anat 2004, 204:93.
-
(2004)
J Anat
, vol.204
, pp. 93
-
-
MacKenzie-Graham, A.1
Lee, E.F.2
Dinov, I.D.3
Bota, M.4
Shattuck, D.W.5
Ruffins, S.6
Yuan, H.7
Konstantinidis, F.8
Pitiot, A.9
Ding, Y.10
-
22
-
-
4344611563
-
Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations
-
Malandain G., Bardinet E., Nelissen K., Vanduffel W. Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations. NeuroImage 2004, 23:111-127.
-
(2004)
NeuroImage
, vol.23
, pp. 111-127
-
-
Malandain, G.1
Bardinet, E.2
Nelissen, K.3
Vanduffel, W.4
-
23
-
-
36348929364
-
An iterative method for registration of high-resolution cardiac histoanatomical and MRI images
-
Mansoori T., Plank G., Burton R., Schneider J., Kohl P., Gavaghan D., Grau V. An iterative method for registration of high-resolution cardiac histoanatomical and MRI images. The 4th IEEE international symposium on biomedical imaging: from nano to macro 2007, 572-575.
-
(2007)
The 4th IEEE international symposium on biomedical imaging: from nano to macro
, pp. 572-575
-
-
Mansoori, T.1
Plank, G.2
Burton, R.3
Schneider, J.4
Kohl, P.5
Gavaghan, D.6
Grau, V.7
-
24
-
-
33646271807
-
A methodology for registration of a histological slide and in vivo MRI volume based on optimizing mutual information
-
Meyer C.R., Moffat B.A., Kuszpit K.K., Bland P.L., McKeever P.E., Johnson T.D., Chenevert T.L., Rehemtulla A., Ross B.D. A methodology for registration of a histological slide and in vivo MRI volume based on optimizing mutual information. Mol Imaging 2006, 5:16-23.
-
(2006)
Mol Imaging
, vol.5
, pp. 16-23
-
-
Meyer, C.R.1
Moffat, B.A.2
Kuszpit, K.K.3
Bland, P.L.4
McKeever, P.E.5
Johnson, T.D.6
Chenevert, T.L.7
Rehemtulla, A.8
Ross, B.D.9
-
25
-
-
0018306059
-
A threshold selection method from gray-level histograms
-
Otsu N. A threshold selection method from gray-level histograms. IEEE Trans Syst Man Cybern B Cybern 1979, 9:62-66.
-
(1979)
IEEE Trans Syst Man Cybern B Cybern
, vol.9
, pp. 62-66
-
-
Otsu, N.1
-
26
-
-
84958167132
-
Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia
-
Ourselin S., Bardinet E., Dormont D., Malandain G., Roche A., Ayache N., Tandé D., Parain K., Yelnik J. Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia. The international conference on medical image computing and computer-assisted intervention 2001, 743-751.
-
(2001)
The international conference on medical image computing and computer-assisted intervention
, pp. 743-751
-
-
Ourselin, S.1
Bardinet, E.2
Dormont, D.3
Malandain, G.4
Roche, A.5
Ayache, N.6
Tandé, D.7
Parain, K.8
Yelnik, J.9
-
27
-
-
0035152169
-
Reconstructing a 3D structure from serial histological sections
-
Ourselin S., Roche A., Subsol G., Pennec X., Ayache N. Reconstructing a 3D structure from serial histological sections. Image Vis Comput 2001, 19:25-31.
-
(2001)
Image Vis Comput
, vol.19
, pp. 25-31
-
-
Ourselin, S.1
Roche, A.2
Subsol, G.3
Pennec, X.4
Ayache, N.5
-
29
-
-
38849148475
-
Geometrical regularization of displacement fields for histological image registration
-
Pitiot A., Guimond A. Geometrical regularization of displacement fields for histological image registration. Med Image Anal 2008, 12:16-25.
-
(2008)
Med Image Anal
, vol.12
, pp. 16-25
-
-
Pitiot, A.1
Guimond, A.2
-
31
-
-
33846616247
-
Image registration of sectioned brains
-
Schmitt O., Modersitzki J., Heldmann S., Wirtz S., Fischer B. Image registration of sectioned brains. Int J Comput Vis 2007, 73:5-39.
-
(2007)
Int J Comput Vis
, vol.73
, pp. 5-39
-
-
Schmitt, O.1
Modersitzki, J.2
Heldmann, S.3
Wirtz, S.4
Fischer, B.5
-
32
-
-
84982462050
-
Alignment of 3-D brain data sets originating from MR and histology
-
Schormann T., von Matthey M., Dabringhaus A., Zilles K. Alignment of 3-D brain data sets originating from MR and histology. Bioimaging 1993, 1:119-128.
-
(1993)
Bioimaging
, vol.1
, pp. 119-128
-
-
Schormann, T.1
von Matthey, M.2
Dabringhaus, A.3
Zilles, K.4
-
33
-
-
0031658766
-
Three-dimensional linear and nonlinear transformations: an integration of light microscopical and MRI data
-
Schormann T., Zilles K. Three-dimensional linear and nonlinear transformations: an integration of light microscopical and MRI data. Hum Brain Mapp 1998, 6:339-347.
-
(1998)
Hum Brain Mapp
, vol.6
, pp. 339-347
-
-
Schormann, T.1
Zilles, K.2
-
34
-
-
0030743676
-
External marker-based automatic congruencing: a new method of 3D reconstruction from serial sections
-
Streicher J., Weninger W.J., Muller G.B. External marker-based automatic congruencing: a new method of 3D reconstruction from serial sections. Anat Rec 1997, 248:583-602.
-
(1997)
Anat Rec
, vol.248
, pp. 583-602
-
-
Streicher, J.1
Weninger, W.J.2
Muller, G.B.3
-
35
-
-
67249083802
-
Registration of in vivo MR to histology of rodent brains using blockface imaging
-
Uberti M., Liu Y., Dou H., Mosley R.L., Gendelman H.E., Boska M. Registration of in vivo MR to histology of rodent brains using blockface imaging. Medical imaging 2009: biomedical applications in molecular, structural, and functional imaging 2009, 726213.
-
(2009)
Medical imaging 2009: biomedical applications in molecular, structural, and functional imaging
, pp. 726213
-
-
Uberti, M.1
Liu, Y.2
Dou, H.3
Mosley, R.L.4
Gendelman, H.E.5
Boska, M.6
-
37
-
-
0030088712
-
Multi-modal volume registration by maximization of mutual information
-
Wells I., William M., Viola P., Atsumi H., Nakajima S., Kikinis R. Multi-modal volume registration by maximization of mutual information. Med Image Anal 1996, 1:35-51.
-
(1996)
Med Image Anal
, vol.1
, pp. 35-51
-
-
Wells, I.1
William, M.2
Viola, P.3
Atsumi, H.4
Nakajima, S.5
Kikinis, R.6
-
39
-
-
84868337939
-
Registration of histology and MR images using local rigid registration and differential evolution
-
Yang Z., Vegh V., Wang D., Reutens D.C. Registration of histology and MR images using local rigid registration and differential evolution. Joint annual meeting ISMRM-ESMRMB ISMRM 2010, 5100.
-
(2010)
Joint annual meeting ISMRM-ESMRMB ISMRM
, pp. 5100
-
-
Yang, Z.1
Vegh, V.2
Wang, D.3
Reutens, D.C.4
-
40
-
-
33751518806
-
A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data
-
Yelnik J., Bardinet E., Dormont D., Malandain G., Ourselin S., Tand D., Karachi C., Ayache N., Cornu P., Agid Y. A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. NeuroImage 2007, 34:618-638.
-
(2007)
NeuroImage
, vol.34
, pp. 618-638
-
-
Yelnik, J.1
Bardinet, E.2
Dormont, D.3
Malandain, G.4
Ourselin, S.5
Tand, D.6
Karachi, C.7
Ayache, N.8
Cornu, P.9
Agid, Y.10
-
41
-
-
33746383498
-
-
Biomedical Image Registration, Utrecht, The Netherlands, 230-7
-
Yushkevich P., Avants B., Ng L., Hawrylycz M., Burstein P., Zhang H., Gee J. 3D mouse brain reconstruction from histology using a coarse-to-fine approach 2006, Biomedical Image Registration, Utrecht, The Netherlands, 230-7.
-
(2006)
3D mouse brain reconstruction from histology using a coarse-to-fine approach
-
-
Yushkevich, P.1
Avants, B.2
Ng, L.3
Hawrylycz, M.4
Burstein, P.5
Zhang, H.6
Gee, J.7
-
42
-
-
0033875356
-
A new diamond search algorithm for fast block-matching motion estimation
-
Zhu S., Ma K.K. A new diamond search algorithm for fast block-matching motion estimation. IEEE Trans Image Process 2000, 9:287.
-
(2000)
IEEE Trans Image Process
, vol.9
, pp. 287
-
-
Zhu, S.1
Ma, K.K.2
|