Emaravirus: Anovel genus of multipartite, negative strand RNA plant viruses

Viruses

Volumn 4, Issue 9, 2012, Pages 1515-1536

  Mielke Ehret, Nicole ^a   Mühlbach, Hans Peter ^a  

^a UNIVERSITY OF HAMBURG   (Germany)

Author keywords

European mountain ash ringspot associated virus; Fig mosaic virus; High Plains virus; Pigeonpea sterility mosaic virus; Raspberry leaf blotch virus; Rose rosette virus

Indexed keywords

VIRUS PROTEIN; VIRUS RNA;

EMARAVIRUS; EUROPEAN MOUNTAIN ASH RINGSPOT ASSOCIATED VIRUS; FIG; FIG MOSAIC DISEASE; FIG MOSAIC VIRUS; GENETIC ORGANIZATION; HIGH PLAIN DISEASE; MAIZE; NONHUMAN; PIGEONPEA; PIGEONPEA STERILITY MOSAIC VIRUS; PLANT VIRUS; RASPBERRY; RASPBERRY LEAF BLOTCH DISEASE; RASPBERRY LEAF BLOTCH VIRUS; REVIEW; RINGSPOT DISEASE; ROSE; ROSE ROSETTE DISEASE; ROSE ROSETTE VIRUS; SEQUENCE ANALYSIS; SEROLOGY; STERILITY MOSAIC DISEASE; VIRAL PLANT DISEASE; VIRUS GENOME; VIRUS MORPHOLOGY; VIRUS PARTICLE; VIRUS TRANSMISSION; ANIMAL; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MITE; PHYLOGENY; PLANT DISEASE; RNA VIRUS; ULTRASTRUCTURE; VIROLOGY;

ACARI; CAJANUS CAJAN; ERIOPHYIDAE; FIGWORT MOSAIC VIRUS; HIGH PLAINS VIRUS; PIGEON PEA STERILITY MOSAIC VIRUS; RNA VIRUSES; RUBUS GLAUCUS; SORBUS AUCUPARIA; TRITICUM AESTIVUM; ZEA MAYS;

ANIMALS; MITES; PHYLOGENY; PLANT DISEASES; PLANT VIRUSES; RNA VIRUSES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

EID: 84867009705     PISSN: 19994915     EISSN: None     Source Type: Journal    
DOI: 10.3390/v4091515     Document Type: Review

References (96)

1. Carstens, E.B. Introduction to virus taxonomy. In Virus Taxonomy. Classification and Nomenclature of Viruses, Ninth Report of the International Committee on Taxonomy of Viruses; King, A.M.Q., Adams, M.J., Carstens, E.B., Lefkovitz, E.J., Eds.; Elsevier: Oxford, UK, 2011; pp. 3-7.
2. Mielke, N.; Muehlbach, H.-P. A novel, multipartite, negative-strand RNA virus is associated with the ringspot disease of European mountain ash (Sorbus aucuparia L.). J. Gen. Virol. 2007, 88, 1337-1346.
3. Mühlbach, H.-P.; Mielke-Ehret, N. Emaravirus. In Virus Taxonomy. Classification and Nomenclature of Viruses, Ninth Report of the International Committee on Taxonomy of Viruses; King, A.M.Q., Adams, M.J., Carstens, E.B., Lefkovitz, E.J., Eds.; Elsevier: Oxford, UK, 2011; pp. 767-770.
4. Elbeaino, T.; Digiaro, M.; Martelli, G.P. Complete nucleotide sequence of four RNA segments of fig mosaic virus. Arch. Virol. 2009, 154, 1719-1727.
5. Walia, J.J.; Salem, N.M.; Falk, B.W. Partial sequence and survey analysis identify a multipartite, negative-sense RNA-virus associated with fig mosaic. Plant Dis. 2009, 93, 4-10.
6. Elbeaino, T.; Digiaro, M.; Alabdullah, A.; de Stradis, A.; Minafra, A.; Mielke, N.; Castellano, M.A.; Martelli, G.P. A multipartite single-stranded negative-sense RNA virus is the putative agent of fig mosaic disease. J. Gen. Virol. 2009, 90, 1281-1288.
7. Adams, M.J.; Carstens, E.B. Ratification vote on taxonomic proposals to the international committee on taxonomy of viruses (2012). Arch. Virol. 2012, 157, 1411-1422.
8. Laney, A.G.; Keller, K.E.; Martin, R.R.; Tzanetakis, I.E. A discovery 70 years in the making: Characterization of the rose rosette virus. J. Gen. Virol. 2011, 92, 1727-1732.
9. McGavin, W.J.; Mitchell, C.; Cock, P.J.A.; Wright, K.M.; MacFarlane, S.A. Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA. J. Gen. Virol. 2012, 93, 430-437.
10. Skare, J.M.; Wijkamp, I.; Denham, I.; Rezende, J.A.M.; Kitajima, E.W.; Park, J.W.; Desvoyes, B.; Rush, C.M.; Michels, G.; Scholthof, K.-B.G.; et al. A new eriophyid mite-borne membrane-enveloped virus-like complex isolated from plants. Virology 2006, 347, 343-353.
11. Kumar, P.L.; Jones, A.T.; Reddy, D.V.R. A novel mite-transmitted virus with a divided RNA genome closely associated with pigeonpea sterility mosaic disease. Phytopathology 2003, 93, 71-81.
12. Kegler, H. Das Ringfleckenmosaik der Eberesche (Sorbus aucuparia L.) (in German). Phytopathol. Z. 1960, 37, 214-216.
13. Benthack, W.; Mielke, N.; Büttner, C.; Mühlbach, H.-P. Double-stranded RNA pattern and partial sequence data indicate plant virus infection associated with ringspot disease of European mountain ash (Sorbus aucuparia L.). Arch. Virol. 2005, 150, 37-52.
14. Mielke, N.; Weber, M.; Khan, S.; Muehlbach, H.-P. Detection of European mountain ash ringspot associated virus (EMARAV) in Sorbus aucuparia L. by a specific antiserum and reverse transcription PCR. For. Pathol. 2008, 38, 371-380.
15. Schlatermund, N. Lokalisation und Quantifizierung der RNAs des European Mountain Ash Ringspot Associated Virus (EMARAV) in der Eberesche (Sorbus aucuparia L.) (in German). Ph.D. thesis, University of Hamburg, Hamburg, Germany, 2009.
16. Polak, Z.; Prochazkova, Z.; Braniaova, H. Recent findings of viruses of forest trees on the territory of the Czech Republic. Arch. Phytopathol. Pflanzenschutz 1990, 26, 389-393.
17. Polak, Z.; Zieglerova, J. Towards ringspots and variegation in mountain ash leaves. Z. Pflanzenkr. Pflanzenschutz 1996, 103, 432-435.
18. Kallinen, A.K.; Lindberg, I.L.; Tugume, A.K.; Valkonen, J.P.T. Detection, distribution and genetic variability of European mountain ash ringspot-associated virus. Phytopathology 2009, 99, 344-352.
19. Raspe, O.; Findlay, C.; Jaquemart, A.-L. Sorbus aucuparia L. J. Ecol. 2000, 88, 910-930.
20. Condit, I.J.; Horne, W.T. A mosaic of the fig in California. Phytopathology 1933, 23, 887-896.
21. Serrano, L.; Ramon, J.; Segarra, J.; Medina, V.; Achón, M.A.; López, M. New approach in the identification of the causal agent of fig mosaic disease. Acta Hort. 2004, 657, 559-566.
22. Martelli, G.P.; Castellano, M.A.; Lafortezza, R. An ultrastructural study of fig mosaic. Phytopathol. Mediterr. 1993, 32, 33-43.
23. Castellano, M.A.; Gattoni, G.; Minafra, A.; Conti, M.; Martelli, G.P. Fig mosaic in Mexico and South Africa. J. Plant Pathol. 2007, 89, 441-444.
24. Acikgöz, S.; Döken, T. The determination of sampling time for dsRNA isolation of the agent of fig mosaic disease prevalent in Aegean region: Turkey. Acta Hort. 2003, 605, 307-310.
25. Elbeaino, T.; Digiaro, M.; de Stradis, A.; Martelli, G.P. Partial characterization of a closterovirus associated with a chlorotic mottling of fig. J. Plant Pathol. 2006, 88, 187-192.
26. Elbeaino, T.; Digiaro, M.; de Stradis, A.; Martelli, G.P. Identification of a second member of the family closteroviridae in mosaic-diseased figs. J. Plant Pathol. 2007, 89, 119-124.
27. Martelli, G.P. Fig mosaic disease and associated pathogens. In Virus and Virus-Like Diseases of Pome and Stone Fruits; Hadidi, A., Barba, M., Candresse, T., Jelkmann, W., Eds.; APS Press: St. Paul, MN, USA, 2011; pp. 281-287.
28. Conners, I.L. Twentieth Annual Report of the Canadian Plant Disease Survey 1940; Department of Agriculture: Ottawa, Canada, 1941; p. 98.
29. Crowe, F.J. Witches' broom of rose: A new outbreak in several Central States. Plant Dis. 1983, 67, 544-546.
30. Epstein, A.H.; Hill, J.H.; Nutter, F.W., Jr. Augmentation of rose rosette disease for biocontrol of multiflora rose (Rosa multiflora). Weed Sci. 1997, 45, 172-178.
31. Gergerich, R.C.; Kim, K.S.; Kitajima, E.W. A particle of unique morphology associated with the disease of rose in northwest Arkansas. Phytopathology 1983, 73, 500-501.
32. Amrine, J.W., Jr.; Hindal, D.F.; Stasny, T.A.; Williams, R.L.; Coffman, C.C. Transmission of the rose rosette disease agent to Rosa multiflora by Phyllocoptes fructiphylus (Acari: Eriophyidae). Entomol. News 1988, 99, 239-252.
33. Di, R.; Hill, J.H.; Epstein, A.H. Double-stranded RNA associated with the rose rosette disease of multiflora rose. Plant Dis. 1990, 74, 56-58.
34. Gordon, S.C.; Taylor, C.E. Some aspects of the biology of the raspberry leaf and bud mite (Phyllocoptes (Eriophyes) gracilis Nal.) Eriophyidae in Scotland. J. Hortic. Sci. 1976, 51, 501-508.
35. Jones, A.T.; Gordon, S.C.; Jennings, D.L. A leaf-blotch disorder of tayberry associated with the leaf and bud mite (Phyllocoptes gracilis) and some effects of three aphid-borne viruses. J. Hortic. Sci. 1984, 59, 523-528.
36. Jensen, S.G.; Lane, L.C. A new virus disease of corn and wheat in the High Plains. Phytopathology 1994, 84, 1158.
37. Slykhuis, J.T. Wheat spot mosaic, caused by a mite-transmitted virus associated with Wheat streak mosaic virus. Phytopathology 1956, 46, 682-687.
38. Jensen, S.G.; Lane, L.C.; Seifers, D.L. A new disease of maize and wheat in the high plains. Plant Dis. 1996, 80, 1387-1390.
39. Mahmood, T.; Hein, G.L.; Jensen, S.G. Mixed infection of hard red winter wheat with High Plains virus and Wheat streak mosaic virus from wheat curl mites in Nebraska. Plant Dis. 1998, 82, 311-315.
40. Seifers, D.L.; Harvey, T.L.; Martin, T.J.; Jensen, S.G. A partial host range of the High Plains virus of corn and wheat. Plant Dis. 1998, 82, 875-879.
41. Jensen, S.G. High plains virus: A new twist to an old story. Phytopathology 1999, 89, S84.
42. Lebas, B.S.M.; Ochoa-Corona, F.M.; Elliott, D.R.; Tang, Z.; Alexander, B.J.R. Development of an RT-PCR for High Plains virus indexing scheme in New Zealand post-entry quarantine. Plant Dis. 2005, 89, 1103-1108.
43. Jones, A.T.; Kumar, P.L.; Saxena, K.B.; Kulkarni, N.K.; Muniyappa, V.; Waliyar, F. Sterility mosaic disease: The 'green plague' of pigeonpea. Plant Dis. 2004, 88, 436-445.
44. Mitra, M. Report of the imperial mycologist. Sci. Rep. Agric. Res. Inst. 1931, 19, 58-71.
45. Saxena, K.B. Genetic improvement of pigeonpea. Trop. Plant Biol. 2008, 1, 159-178.
46. Kumar, P.L.; Latha, T.K.S.; Kulkarni, N.K.; Raghavendra, N.; Saxena, K.B.; Waliyar, F.; Rangaswamy, K.T.; Muniyappa, V.; Doriswamy, S.; Jones, A.T. Broad-Based resistance to pigeonpea sterility mosaic disease in wild relatives of pigeonpea (Cajanus: Phaseolae). Ann. Appl. Biol. 2005, 146, 371-379.
47. Kannaiyan, J.; Nene, Y.L.; Reddy, M.V.; Ryan, J.G.; Raju, T.N. Prevalence of pigeonpea disease and associated crop losses in Asia, Africa and the Americas. Trop. Pest Manag. 1984, 30, 62-71.
48. Reddy, M.V.; Kannaiyan, J.; Nene, Y.L. Increased susceptibility of sterility mosaic infected pigeonpea to powdery mildew. Int. J. Trop. Plant Dis. 1984, 2, 35-40.
49. Sithanantham, S.; Reddy, M.V.; Rameshwar, R.V. Increased damage by the spider mite Schizotetranychus cajani in Pigeonpea Plants affected by sterility mosaic. In Progress in Acarology; Channabasavanna, G.P., Viraktamath, C.A., Eds.; Oxford & IBH Publishing Co: New Delhi, India, 1989; Volume 2, pp. 11-14.
50. Kumar, P.L.; Duncan, G.H.; Roberts, A.M.; Jones, A.T.; Reddy, D.V.R. Cytopathology of pigeonpea sterility mosaic virus in pigeonpea and Nicotiana benthamiana: Similarities with those of eriophyid mite-borne agents of undefinded aetiology. Ann. Appl. Biol. 2002, 140, 87-96.
51. Bradfute, O.E.; Whitmoyer, R.E.; Nault, R.L. Ultrastructure of plant leaf tissue infected with mite-borne viral-like particles. Proc. Electron Microsc. Soc. Am. 1970, 258, 178-179.
52. Ebrahim-Nesbat, F.; Izadpanah, K. Virus-Like particles associated with ringfleck mosaic of mountain ash and a mosaic disease of raspberry in the Bavarian forest. Eur. J. For. Path. 1992, 22, 1-10.
53. Kikkert, M.; van Poelwijk, F.; Storms, M.; Kassies, W.; Bloksma, H.; van Lent, J.; Kormelink, R.; Goldbach, R. A protoplast system for studying Tomato spotted wilt virus infection. J. Gen. Virol. 1997, 78, 1755-1763.
54. Plavsic, B.; Milicic, D. Intracellular changes in trees infected with fig mosaic. Acta Hort. 1980, 110, 281-286.
55. Appiano, A.; Conti, M.; Zini, N. Cytopathological study of the double-membrane bodies in fig plants affected by fig mosaic disease. Acta Hort. 1995, 386, 585-592.
56. Ammar, E.D.; Gingery, R.E.; Nault, L.R. Two types of inclusions in maize infected with maize stripe virus. Phytopathology 1985, 75, 84-89.
57. Espinoza, A.M.; Pereira, R.; Macaya-Lizano, A.V.; Hernandez, M.; Goulden, M.; Rivera, C. Comparative light and electron microscopic analyses of tenuivirus major noncapsid protein (NCP) inclusion bodies in infected plants, and of the NCP in vitro. Virology 1991, 195, 156-166.
58. Ahn, K.K.; Kim, K.S.; Gergerich, R.C.; Jensen, S.G. High Plains disease of corn and wheat: Ultrastructural and serological aspects. J. Submicrosc. Cytol. Pathol. 1998, 30, 563-571.
59. Louie, R.; Seifers, D.L.; Bradfute, O.E. Isolation, transmission and purification of the High Plains virus. J. Virol. Meth. 2006, 135, 214-222.
60. Black, L.M.; Brakke, M.K.; Vatter, A.E. Purification and electron microscopy of tomato spotted-wilt virus. Virology 1963, 20, 120-130.
61. Kitajima, E.W.; de Avila, A.C.; Resende, R.D.O.; Goldbach, R.W.; Peters, D. Comparative cytological and immunogold labelling studies on different isolates of tomato spotted wilt virus. J. Submicrosc. Cytol. Pathol. 1992, 24, 1-14.
62. Silvestro, S.R.; Chapman, G.B. A transmission electron microscope study of "New Dawn" climber rose (Rosa wichuraiana x safrano) exhibiting rose rosette disease. Plant Cell Rep. 2004, 23, 345-351.
63. Kikkert, M.; van Lent, J.; Storms, M.; Bodegom, P.; Kormelink, R.; Goldbach, R. Tomato spotted wilt virus particle morphogenesis in plant cells. J. Virol. 1999, 73, 2288-2297.
64. Duijsings, D.; Kormelink, R.; Goldbach, R. In vivo analysis of the TSWV cap-snatching mechanism: Single base complementarity and primer length requirements. EMBO J. 2001, 20, 2535-2552.
65. Rao, P.; Yuan, W.; Krug, R.M. Crucial role of CA cleavage sites in the cap-snatching mechanism for initiating viral mRNA synthesis. EMBO J. 2003, 22, 1188-1198.
66. Walia, J.J.; Falk, B.W. Fig mosaic virus mRNAs show generation by cap-snatching. Virology 2012, 426, 162-166.
67. Liu, D.Y.; Tesh, R.B.; Travassos da Rosa, A.P.A.; Peters, C.J.; Yang, Z.; Guzman, H.; Xiao, S.Y. Phylogenetic relationships among members of the genus Phlebovirus (Bunyaviridae) based on partial M segment sequence analyses. J. Gen. Virol. 2003, 84, 465-473.
68. Fodor, E.; Pritlove, D.C.; Brownlee, G.G. The influenza virus panhandle is involved in the initiation of transcription. J. Virol. 1994, 68, 4092-4096.
69. Barr, J.N.; Elliott, R.M.; Dunn, E.F.; Wertz, G.W. Segment specific terminal sequences of Bunyamwera bunyavirus regulate genome replication. Virology 2003, 311, 326-228.
70. Kohl, A.; Lowen, A.C.; Leonard, V.H.J.; Elliott, R.M. Genetic elements regulating packaging of the Bunyamwera orthobunyavirus genome. J. Gen. Virol. 2006, 87, 177-187.
71. Elbeaino, T.; Digiaro, M.; Martelli, G.P. RNA-5 and-6, two additional negative-sense RNA segments associated with fig mosaic virus. J. Plant Pathol. 2012, 1, doi:10.4454/JPP.FA.2012.027.
72. Ishikawa, K.; Maejima, K.; Komatsu, K.; Kitazawa, Y.; Hashimoto, M.; Takata, D.; Yamaji, Y.; Namba, S. Identification and characterization of two novel genomic RNA segments of fig mosaic virus, RNA5 and RNA6. J. Gen. Virol. 2012, 93, 1612-1619.
73. Dolja, V.V.; Kreuze, J.F.; Valkonen, J.P. Comparative and functional genomics of closteroviruses. Virus Res. 2006, 117, 38-51.
74. Seifers, D.L.; Harvey, T.L.; Martin, T.J.; Jensen, S.G. Identification of the wheat curl mite as the vector of the High Plains virus of corn and wheat. Plant Dis. 1997, 81, 1161-1166.
75. She, Y.-M.; Seifers, D.L.; Haber, S.; Ens, W.; Standing, K.G. Characterization of the agent of 'High Plains disease'. J. Biol. Chem. 2004, 279, 488-494.
76. Kulkarni, N.K.; Kumar, P.L.; Muniyappa, V.; Jones, A.T.; Reddy, D.V.R. Transmission of pigeon pea sterility mosaic by the eriophyid mite, Aceria cajani (Acari: Arthropoda). Plant Dis. 2002, 86, 1297-1302.
77. Seifers, D.L.; Harvey, T.L.; Louie, R.; Gordon, D.T.; Martin, T.J. Differential transmission of isolates of the High Plains virus by different sources of wheat curl mites. Plant Dis. 2002, 86, 138-142.
78. Skare, J.M.; Wijkamp, I.; Rezende, J.A.M.; Michels, G.; Rush, C.; Scholthof, K.-B.G.; Scholthof, H.B. Colony establishment and maintenance of the eriophyid wheat curl mite Aceria tosichella for controlled transmission studies on a new virus-like pathogen. J. Virol. Methods 2003, 108, 133-137.
79. Mielke-Ehret, N.; Thoma, J.; Schlatermund, N.; Mühlbach, H.-P. Detection of European mountain ash ringspot-associated virus-specific RNA and protein P3 in the pear leaf blister mite Phytoptus pyri (Eriophyidae). Arch. Virol. 2010, 155, 987-991.
80. Elbeshehy, E.K.; Elbeaino, T. Viruses infecting figs in Egypt. Phytopathol. Mediterr. 2011, 50, 327-332.
81. El Air, M.; Mahfoudhi, N.; Elbeaino, T.; Dhouibi, M. H.; Digiaro, M. Occurrence of fig mosaic virus in Tunisian fig orchards. J. Plant Pathol. 2012, 1, doi:10.4454/JPP.DN.2012.006.
82. Alhudaib, K. Incidence of fig leaf mottle-associated virus and fig mosaic virus in Eastern Province of Saudi Arabia. Int. J. Virol. 2012, 8, 128-132.
83. Shahmirzaie, M.; Rakhshanderoo, F.; Zamanizadeh, H.R.; Elbeaino, T. Current status of fig mosaic disease in Iran. J. Phytopathol. 2012, 160, 324-330.
84. Ishikawa, K.; Maejima, K.; Nagashima, S.; Sawamura, N.; Takinami, Y.; Komatsu, K.; Hashimoto, M.; Yamaji, Y.; Yamamoto, J.; Namba, S. First report of fig mosaic virus infecting common fig (Ficus carica) in Japan. J. Gen. Plant Pathol. 2012, 78, 136-139.
85. Flock, R.A.; Wallace, J.M. Transmission of fig mosaic by the eriophyid mite Aceria ficus. Phytopathology 1955, 45, 52-54.
86. Seth, M.L. Transmission of pigeonpea sterility by an eriophyid mite. Indian Phytopathol. 1962, 15, 225-227.
87. Proeseler, G. Beziehungen zwischen Virus, Vektor und Wirtspflanze am Beispiel des Feigenmosaik-Virus und Aceria ficus Cotte (Eriophyoidea) (in German). Acta Phytopathol. Acad. Sci. Hung. 1972, 7, 179-186.
88. Capoor, S.P. Observations on pigeonpea sterility disease in Bombay. Indian J. Agric. Sci. 1952, 22, 271-274.
89. Alfieri, S.A., Jr. Fig mosaic. Plant Pathology Circular No. 64; Florida Department of Agriculture, Division of Plant Industry: Gainesville, FL, USA, 1967.
90. Führling, M.; Büttner, C. Transmission experiments of viruses to woody seedlings (Quercus robur L. and Sorbus aucuparia L.) by grafting and mechanical inoculation. Eur. J. For. Path. 1995, 25, 129-135.
91. Forster, R.L.; Seifers, D.L.; Strausbaugh, C.A.; Jensen, S.G.; Ball, E.M.; Harvey, T.L. Seed transmission of the High Plains virus in sweet corn. Plant Dis. 2001, 85, 696-699.
92. Divya, P.; Kumar, L.L.; Rangaswamy, K.T.; Muniyappa, V. Detection of pigonpea sterility mosaic virus in floral parts and seeds. Indian J. Virol. 2005, 16, 36.
93. Kim, K.S.; Martin, E.M. Virus-like particles associated with yellow ringspot of redbud. Phytopathol. News 1978, 12, 119.
94. Ahn, K.K.; Kim, K.S.; Gergerich, R.C.; Jensen, S.G.; Anderson, E.J. Comparative ultrastructure of double-membrane-bound particles and inclusions associated with eriophyid mite-borne plant diseases of unknown etiology: A potentially new group of plant viruses. J. Submicrosc. Cytol. Pathol. 1996, 28, 345-355.
95. Laney, A.G.; Gergerich, R.; Keller, K.; Martin, R.; Tzanetakis, I. Rose rosette and redbud yellow ringspot are caused by two new emaraviruses. Phytopathology 2010, 100, S67.
96. Robertson, N.L.; Brown, K.L. Ringspot leaf symptoms on Sorbus scopulina greene associated with virus-like particles. Phytopathology 2009, 99, S185-S186.