Complete nucleotide sequence of four RNA segments of fig mosaic virus

Archives of Virology

Volumn 154, Issue 11, 2009, Pages 1719-1727

  Elbeaino, Toufic ^a   Digiaro, Michele ^a   Martelli, Giovanni P ^b  

^a ISTITUTO AGRONOMICO MEDITERRANEO   (Italy)

^b CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; GENE EXPRESSION REGULATION; GENETICS; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT VIRUS;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; GENE EXPRESSION REGULATION, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT VIRUSES; RNA, VIRAL; VIRAL PROTEINS;

BUNYAVIRIDAE; CAJANUS CAJAN; FIGWORT MOSAIC VIRUS; HANTAVIRUS; ORTHOBUNYAVIRUS; PIGEON PEA STERILITY MOSAIC VIRUS; SORBUS AUCUPARIA; TOSPOVIRUS; UNCLASSIFIED VIRUSES; ZEA MAYS;

EID: 70350676311     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-009-0509-3     Document Type: Article

References (35)

1. Ahn KK, Kim KS, Gergerich RC, Jensen S, Anderson EJ (1996) Comparative ltrastructure of double membrane-bound particles and inclusions associated with eriophyid mite-borne plant disease of unknown etiology: a potentially new group of plant viruses. J Submicrosc Cytol Pathol 28:345-355.
2. Altschul SF, Stephen F, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410.
3. Appiano A, Conti M, Zini N (1995) Cytopathological study of the double-membrane bodies occurring in fig plants affected by fig mosaic disease. Acta Hortic 386:585-592.
4. Benthack W, Mielke N, Buttner C, Muhlbach HP (2005) Double-stranded RNA pattern and partial sequence data indicate plant virus infection associated with ringspot disease of European mountain ash (Sorbus aucuparia L.). Arch Virol 150:37-52.
5. Bradfute OR, Whitmoyer RE, Nault RL (1970) Ultrastructure of plant leaf tissue infected with mite-borne viral-like particles. Proc Electron Microsc Soc Am 258:178-179.
6. Bruenn JA (2003) A structural and primary sequence comparison of the viral RNA-dependent RNA polymerases. Nucleic Acids Res 31(7):1821-1829.
7. Castellano MA, Gattoni G, Minafra A, Conti M, Martelli GP (2007) Fig mosaic in Mexico and South Africa. J Plant Pathol 89:441-443.
8. Chomczynski P (1992) One-hour downward alkaline capillary transfer for blotting of DNA and RNA. Anal Biochem 201:134-139.
9. Condit IJ, Horne WT (1933) A mosaic of the fig in California. Phytopathology 23:887-896.
10. Coutts RHA, Livieratos IC (2003) A rapid method for sequencing the 5′- and 3′-termini of double-stranded RNA viral templates using RLM-RACE. J Phytopathol 151:525-527.
11. Dodds JA (1993) DsRNA in diagnosis. In: Matthews REF (ed) Diagnosis of plant virus diseases. CRC Press, Boca Raton, pp 273-294.
12. Ebrahim-Nesbat F, Izadpanah K (1992) Virus-like particles associated with ringfleck mosaic of mountain ash and a mosaic disease of raspberry in the Bavarian forest. Eur J Forest Pathol 22:1-10.
13. Elbeaino T, Digiaro M, Alabdullah A, De Stradis A, Minafra A, Mielke N, Castellano MA, Martelli GP (2009) A multipartite single-stranded negative-sense RNA virus is the putative agent of fig mosaic disease. J Gen Virol 90(5):1281-1288.
14. Emanuelsson O, Nielsen H, Brunak S, Von Heijne G (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300:1005-1016.
15. Emanuelsson O, Brunak S, Von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP, and related tools. Nat Protoc 2:953-971.
16. Flock RA, Wallace JM (1955) Transmission of fig mosaic by the eriophyid mite Aceria ficus. Phytopathology 45:52-54.
17. Foissac X, Svanella-Dumas L, Gentit P, Dulucq MJ, Candresse T (2001) Polyvalent detection of fruit tree Tricho, Capillo and Foveavirus by nested RT-PCR using degenerated and inosine containing primers (DOP RT-PCR). Acta Hortic 550:37-43.
18. Kulkarni NK, Lava Kumar P (2002) Transmission of Pigeon pea sterility mosaic virus by the eriophyid mite, Aceria cajani (Acari: Arthropoda). Plant Dis 86:1297-1302.
19. Lava Kumar PL, Duncan GC, Roberts IM, Jones AT, Reddy DVR (2002) Cytopathology of Pigeonpea sterility mosaic virus in pigeonpea and Nicotiana benthamiana: similarities with those of eriophyid mite-borne agents of undefined aetiology. Ann Appl Biol 140:87-96.
20. Lava Kumar PL, Jones AT, Reddy DVR (2003) A novel mite-transmitted virus with a divided RNA genome closely associated with pigeonpea sterility mosaic disease. Phytopathology 93:71-81.
21. Marck C (1988) DNA Strider: a "C" programme for the fast analysis of DNA and protein sequences on the Apple Macintosh family computers. Nucleic Acids Res 16:1829-1836.
22. Martelli GP (2009). Fig mosaic disease and associated viruses. In: Hadidi A, Barba M, Candresse T, Jelkmann W (eds) Virus and virus-like diseases of pome and stone fruits. APS Press, St. Paul (in press).
23. Martelli GP, Castellano MA, Lafortezza R (1993) An ultrastructural study of fig mosaic. Phytopathol Mediterr 32:33-43.
24. Matsuda S, Vert JP, Saigo H, Ueda N, Toh H, Akutsu T (2005) A novel representation of protein sequences for prediction of subcellular location using support vector machines. Protein Sci 14:2804-2813.
25. Mielke N, Muehlbach HP (2007) A novel, multipartite, negative-strand RNA virus is associated with the ringspot disease of European mountain ash (Sorbus aucuparia L.). J Gen Virol 88:1337-1346.
26. Müller R, Poch O, Delarue M, Bishop DHL, Bouloy M (1994) Rift valley fever virus L segment: correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases. J Gen Virol 75:1345-1352.
27. Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448.
28. Perlman D, Halvorson HO (1983) A putative signal peptidase recognition site and sequence in eukaryotic and prokaryotic signal peptides. J Mol Biol 167:391-409.
29. Perrière G, Gouy M (1996) WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78:364-369.
30. Proeseler G (1972) Beziehungen zwischen Virus, Vektor und Wirstpflanze am Beispiel des Feigenmosaik-Virus und Aceria ficus Cotte (Eriophyoidea). Acta Phytopathologica Academiae Scientiarium Hungaricae 7:106-179.
31. Saldarelli P, Minafra A, Martelli GP, Walter B (1994) Detection of grapevine leafroll-associated closterovirus III by molecular hybridization. Plant Pathol 43:91-96.
32. Skare JM, Wijkamp I, Rezende JAM, Kitajima EW, Park JW, Desvoyes B, Rush CM, Michels G, Scholthof KBG, Scholthof HB (2006) A new eriophyid mite-borne membrane-enveloped virus-like complex isolated from plants. Virology 347:343-353.
33. Von Heijne G (1986) A new method for predicting signal sequence cleavage sites. Nucleic Acids Res 14:4683-4690.
34. Von Heijne G (1983) Patterns of amino acids near signal sequence cleavage sites. Eur J Biochem 133:17-21.
35. Walia JJ, Salem NM, Falk BW (2009) Partial sequence and survey analysis identify a multipartite, negative-sense RNA virus associated with fig mosaic. Plant Dis 93:4-10.