Comparative genomic analysis of gene variations of two Chinese Yersinia pestis isolates from vaccine strain EV76

Biomedical and Environmental Sciences

Volumn 25, Issue 4, 2012, Pages 440-448

  You, Yuan Hai ^a   Wang, Peng ^a,b   Wang, Yan Hua ^a   Zhang, Mao Jun ^a   Song, Zhi Zhong ^b   Hai, Rong ^a   Yu, Dong Zheng ^a   Wang, Hai Bin ^a   Dong, Xing Qi ^b   Zhang, Jian Zhong ^a  

^a CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^b Provincial Key Laboratory for Plague Control and Prevention   (China)

Author keywords

arrayCGH; Yersinia pestis

Indexed keywords

ARTICLE; BACTERIAL GENOME; CHINA; COMPARATIVE GENOMIC HYBRIDIZATION; GENETICS; METHODOLOGY; POLYMERASE CHAIN REACTION; YERSINIA PESTIS;

CHINA; COMPARATIVE GENOMIC HYBRIDIZATION; GENOME, BACTERIAL; POLYMERASE CHAIN REACTION; YERSINIA PESTIS;

RODENTIA; YERSINIA PESTIS; YERSINIA PSEUDOTUBERCULOSIS;

EID: 84866981506     PISSN: 08953988     EISSN: None     Source Type: Journal    
DOI: 10.3967/0895-3988.2012.04.009     Document Type: Article

References (32)

1. RD Perry, JD Fetherston Yersinia pestis - etiologic agent of plague Clin Microbiol Rev 10 1997 35 66
2. G Torrea, V Chenal-Francisque, A Leclercq et al. Efficient tracing of global isolates of Yersinia pestis by restriction fragment length polymorphism analysis using three insertion sequences as probes J Clin Microbiol 44 2006 2084 2092
3. AP Anisimov Yersinia pestis factors, assuring circulation and maintenance of the plague pathogen in natural foci ecosystems. Report 1 Mol Gen Mikrobiol Virusol 3 2002 3 23
4. P Andrey, E Luther, B Gerald Intraspecific Diversity of Yersinia pestis Clinical Microbiology Reviews 17 2004 434 464
5. T Zhang, L Xia, Q Liang et al. Investigation of serum epidemiology from the plague foci population in Leizhou island, Guangdong Chin J Ctrl Endem Dis 22 2007 16 18
6. G Girard La vaccination de l' home contre la peste av moyan de bacillus vivants (virus vaccine E.V.), son application Madagscar Bull Off Int Hyg Publ 28 1936 1078 1087
7. KF Meyer Effectiveness of live or killed plague vaccines in man Bulletin World Health Organisation 42 1970 653 666
8. C Buchrieser, M Prentice, E Carnie The 102-kilobase unstable region of Yersinia pestis comprises a high-pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement J Bacteriol 180 1998 2321 2329
9. s associated with virulence Microb Pathog 12 1992 177 186
10. M Achtman, K Zurth, G Morelli et al. Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis Proc Natl Acad Sci USA 96 1999 14043 14048
11. Z Zhang, R Hai, Z Song et al. Spatial variation of Yersinia pestis from Yunnan Province of China Am J Trop Med Hyg 81 2009 714 717
12. Y Li, Y Cui, Y Hauck et al. Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the expansion of plague foci PLoS ONE 4 2009 e6000
13. J Stewart, E Karen, A Richard et al. Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis Genome Research 13 2003 2018 2029
14. D Zhou, Y Han, Y Song et al. DNA Microarray Analysis of Gen ome Dynamics in Yersinia pestis: Insights into Bacterial Genome Microevolution and Niche Adaptation J Bacteriol 186 2004 5138 5146
15. D Zhou, Y Han, E Dai et al. Defining the genome content of live plague vaccines by use of whole-genome DNA microarray Vaccine 22 2004 3367 3374
16. W Deng, V Burland, G Plunkett et al. Genome sequence of Yersinia pestis KIM J Bacteriol 184 2002 4601 4611
17. J Parkhill, BW Wren, NR Thomson et al. Genome sequence of Yersinia pestis, the causative agent of plague Nature 413 2001 523 527
18. Y Song, Z Tong, J Wang et al. Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans DNA Res 11 2004 179 197
19. PS Chain, P Hu, SA Malfatti et al. Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen J Bacteriol 188 2006 4453 4463
20. RK Auerbach, A Tuanyok, WS Probert et al. Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America PLoS One 2 2007 e770
21. R Diaz-Uriarte, OM Rueda ADaCGH: A Parallelized Web-Based Application and R Package for the Analysis of aCGH Data PLoS ONE 2 2007 e737
22. AB Olshen, ES Venkatraman, R Lucito et al. Circular binary segmentation for the analysis of array-based DNA copy number data Biostatistics 5 2004 557 562
23. Y You, P Wang, Y Wang et al. Evaluation of comparative genomic hybridization experiment by an in situ synthesized CombiMatrix microarray with Yersinia pestis vaccine strain EV76 DNA Biomed Environ Sci 5 2010 384 390
24. D Lorenzin, C Webb, PS Summers et al. Enzymes of choline synthesis in diverse plants:variation in phosphobase N-methyltransferase activities Canadian Journal of Botany 79 2001 897 904
25. Z Tong, D Zhou, Y Song et al. Genetic variations in the pgm locus among natural isolates of Yersinia pestis J Gen Appl Microbiol 51 2005 11 19
26. MJ Lodes, D Suciu, JL Wilmoth et al. Identification of upper respiratory tract pathogens using electrochemical detection on an oligonucleotide microarray PLoS ONE 2 2007 e924
27. JL Michael, S Dominic, E Mark et al. Use of Semiconductor-Based Oligonucleotide Microarrays for Influenza A Virus Subtype Identification and Sequencing J Clin Microbiol 44 2006 1209 1218
28. JJ Chen, HM Hsueh, RR Delongchamp et al. Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data BMC Bioinformatics 8 2007 412
29. G Morelli, Y Song, CJ Mazzoni et al. Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity Nat Genet 42 2010 1140 1143
30. DK Blencowe, AP Morby Zn (II) metabolism in prokaryotes FEMS Microbiol Rev 27 2003 291 311
31. R Jeffrey The role of multidrug efflux pumps in the antibiotic resistance of Pseudomonas aeruginosa and other gram-negative bacteria. Insights from the Society of Infectious Diseases Pharmacists Pharmacotherapy 23 2003 916 924
32. B Johanna, E Jürgen, W Berndt et al. ETBE (ethyl tert butyl ether) and TAME (tert amyl methyl ether) affect microbial community structure and function in soils J Hazard Mater 187 2011 488 494