Evidence for methane production by saprotrophic fungi

Nature Communications

Volumn 3, Issue , 2012, Pages

  Lenhart, Katharina ^a   Bunge, Michael ^b   Ratering, Stefan ^b   Neu, Thomas R ^c   Schüttmann, Ina ^b   Greule, Markus ^a   Kammann, Claudia ^b   Schnell, Sylvia ^b   Müller, Christoph ^b,d   Zorn, Holger ^b   Keppler, Frank ^a  

^a MAX PLANCK INSTITUTE FOR CHEMISTRY   (Germany)

^b JUSTUS LIEBIG UNIVERSITY   (Germany)

^c HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH UFZ   (Germany)

^d UNIVERSITY COLLEGE DUBLIN   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; CARBON DIOXIDE; METHANE;

ARTICLE; BASIDIOMYCETES; CONFOCAL LASER MICROSCOPY; ENDOSYMBIONT; FLUORESCENCE IN SITU HYBRIDIZATION; FUNGAL CELL; METHANOGENIC ARCHAEON; MICROBIAL CONTAMINATION; NONHUMAN; REAL TIME POLYMERASE CHAIN REACTION; SAPROTROPH; TRAMETES VERSICOLOR;

AEROBIOSIS; BASIDIOMYCOTA; BIOMASS; METHANE; METHIONINE;

EUKARYOTA; FUNGI; PROKARYOTA;

EID: 84866981345     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms2049     Document Type: Article

References (43)

1. Forster, P. et al. Changes in Atmospheric Constituents and in Radiative Forcing (Cambridge University Press, 2007).
2. Petit, J. R. et al. Climate and atmospheric history of the past 420,000 years from the Vostok ice core, Antarctica. Nature 399, 429-436 (1999). (Pubitemid 29258841)
3. Leliefeld, J., Crutzen, P. J. & Dentener, F. J. Changing concentration, lifetime and climate forcing of atmospheric methane. Tellus B 50, 128-150 (1998).
4. Heimann, M. Atmospheric science: enigma of the recent methane budget. Nature 476, 157-158 (2011).
5. Dlugokencky, E. J. et al. Observational constraints on recent increases in the atmospheric CH4 burden. Geophys. Res. Lett. 36, L18803 (2009).
6. Conrad, R. The global methane cycle: recent advances in understanding the microbial processes involved. Env. Microbiol. Rep. 1, 285-292 (2009).
7. Keppler, F., Hamilton, J. T. G., Braß, M. & Röckmann, T. Methane emissions from terrestrial plants under aerobic conditions. Nature 439, 187-191 (2006). (Pubitemid 43083137)
8. Bruhn, D., Møller, I. M., Mikkelsen, T. N. & Ambus, P. Terrestrial plant methane production and emission. Physiol. Plant 144, 201-209 (2012).
9. Ghyczy, M. et al. Hypoxia-induced generation of methane in mitochondria and eukaryotic cells-an alternative approach to methanogenesis. Cell. Physiol. Biochem. 21, 251-258 (2008).
10. Brüggemann, N. et al. Nonmicrobial aerobic methane emission from poplar shoot cultures under low-light conditions. New Phytol. 182, 912-918 (2009).
11. Keppler, F. et al. Methane formation in aerobic environments. Environ. Chem. 6, 459-465 (2009).
12. Ghyczy, M., Torday, C. & Boros, M. Simultaneous generation of methane, carbon dioxide, and carbon monoxide from choline and ascorbic acid: a defensive mechanism against reductive stress? FASEB J. 17, 1124-1126 (2003).
13. Wishkerman, A. et al. Enhanced formation of methane in plant cell cultures by inhibition of cytochrome c oxidase. Plant Cell Environ. 34, 457-464 (2011).
14. Mukhin, V. & Voronin, P. Methane emission during wood fungal decomposition. Doklady Biol. Sci. 413, 159-160 (2007). (Pubitemid 46725980)
15. Beckmann, S., Krüger, M., Engelen, B., Gorbushina, A. A. & Cypionka, H. Role of bacteria, archaea and fungi involved in methane release in abandoned coal mines. Geomicrobiol. J. 28, 347-358 (2011).
16. Bianciotto, V. et al. Detection and identification of bacterial endosymbionts in arbuscular mycorrhizal fungi belonging to the family gigasporaceae. Appl. Environ. Microbiol. 66, 4503-4509 (2000).
17. Bianciotto, V. & Bonfante, P. Arbuscular mycorrhizal fungi: a specialised niche for rhizospheric and endocellular bacteria. Antonie van Leeuwenhoek 81, 365-371 (2002). (Pubitemid 35314625)
18. Partida-Martinez, L. P. & Hertweck, C. Pathogenic fungus harbours endosymbiotic bacteria for toxin production. Nature 437, 884-888 (2005). (Pubitemid 41486763)
19. Mukhin, V. & Voronin, P. Mycogenic decomposition of wood and carbon emission in forest ecosystems. Russ. J. Ecol. 38, 22-26 (2007). (Pubitemid 46088458)
20. Highley, T. L., Bar-Lev, S. S., Kirk, T. K. & Larsen, M. J. Influence of O2 and CO2 on wood decay by heartrot and saprot fungi. J. Physiol. Biochem. 73, 630-633 (1983).
21. Vigano, I. et al. The stable isotope signature of methane emitted from plant material under UV irradiation. Atmos. Environ. 43, 5637-5646 (2009).
22. Harper, D. B., Buswell, J. A., Kennedy, J. T. & Hamilton, J. T. G. Chloromethane, methyl donor in veratryl alcohol biosynthesis in Phanerochaete chrysosporium and other lignin-degrading fungi. Appl. Environ. Microbiol. 56, 3450-3457 (1990). (Pubitemid 20380724)
23. Watling, R. & Harper, D. B. Chloromethane production by wood-rotting fungi and an estimate of the global flux to the atmosphere. Mycol. Res. 102, 769-787 (1998). (Pubitemid 28346688)
24. Harper, D. B. & Kennedy, J. T. Effect of growth conditions on halomethane production by phellinus species: biological and environmental implications. J. Gen. Microbiol. 132, 1231-1246 (1986). (Pubitemid 16115632)
25. Folman, L. B., Klein Gunnewiek, P. J. A., Boddy, L. & De Boer, W. Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil. FEMS Microbiol. Ecol. 63, 181-191 (2008).
26. de Boer, W. & van der Wal, A. In British Mycological Society Symposia Series Vol. 28, 143-153 (eds Juliet, C., Frankland Lynne Boddy & von West, P.) (2008).
27. Mukhin, V. & Voronin, P. A new source of methane in boreal forests. Appl. Biochem. Microbiol. 44, 297-299 (2008). (Pubitemid 351692023)
28. Mukhin, V. A. & Voronin, P. Y. Methanogenic activity of woody debris. Russ. J. Ecol 40, 149-153 (2009).
29. Dunfield, P. F. In Greenhouse Gas Sinks (eds Reay, D., Hewitt, N., Smith, K. & Grace, J.) 152-170 (CABI Publishing, 2007).
30. Kammann, C., Hepp, S., Lenhart, K. & Müller, C. Stimulation of methane consumption by endogenous CH4 production in aerobic grassland soil. Soil Biol. Biochem. 41, 622-629 (2009).
31. Price, S. J. et al. Pristine New Zealand forest soil is a strong methane sink. Glob. Change Biol. 10, 16-26 (2004). (Pubitemid 38162537)
32. Ojima, D. S., Valentine, D. W., Mosier, A. R., Parton, W. J. & Schimel, D. S. Effect of land use change on methane oxidation in temperate forest and grassland soils. Chemosphere 26, 675-685 (1993). (Pubitemid 23087876)
33. Powlson, D. S., Goulding, K. W. T., Willison, T. W., Webster, C. P. & Hütsch, B. W. The effect of agriculture on methane oxidation in soil. Nutr. Cycl. Agroecosys. 49, 59-70 (1997).
34. Hintikka, V. In Decomposer Basidiomycetes: their Biology and Ecology (eds Frankland, J.C., Hedger, J.N. & Swift, M.J.) 227-239 (Univ Press, 1982).
35. Rabe, C. Einfluss verschiedener Gasatmosphären auf das Wachstum holzzersetzender Pilze (Albert-Ludwigs-Universität, 2008).
36. Kamman, C., Ratering, S., Eckhart, C. & Müller, C. Biochar and hydrochar effects on greenhouse gas (CO2, N2O, CH4) fluxes from soils. J. Env. Qual. 41, 1052-1066 (2012).
37. Mosier, A. R. & Mack, L. Gas-chromatographic system for precise, rapid analysis of nitrous oxide. Soil Sci. Soc. Am. J. 44, 1121-1123 (1980).
38. Loftfield, N. Automated gas chromatographic system for rapid analysis of the atmospheric trace gases methane, carbon dioxide, and nitrous oxide. J. Env. Qual. 26, 560-564 (1997). (Pubitemid 27146686)
39. Stahl, D. A. & Amann, R. In Nucleic Acid Techniques in Bacterial Systematics (eds Stackebrandt, E. & Goodfellow, M.) (John Wiley & Sons Ltd, 1991).
40. Daims, H., Stoecker, K. & Wagner, M. Fluorescence in situ hybridization for the detection of prokaryotes. in Advanced Methods in Molecular Microbial Ecology (eds Osborn, A.M., Smith, C.J.) 213-239 (Bios-Garland, 2005).
41. Luton, P. E., Wayne, J. M., Sharp, R. J. & Riley, P. W. The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiology 148, 3521-3530 (2002). (Pubitemid 35414462)
42. Kampmann, K. et al. Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates. Appl. Environ. Microbiol. 78, 2106-2119 (2012).
43. Widdel, F. & Bak, F. In The Prokaryote (eds Balows, A. et al.) 3352-3378 (Springer Verlag, 1992).