Origin and Evolution of Dengue Virus Type 3 in Brazil

PLoS Neglected Tropical Diseases

Volumn 6, Issue 9, 2012, Pages

  Araújo, Josélio Maria Galvão de ^a   Bello, Gonzalo ^b   Romero, Hector ^c   Nogueira, Rita Maria Ribeiro ^b  

^a FEDERAL UNIVERSITY OF RIO GRANDE DO NORTE   (Brazil)

^b INSTITUTO OSWALDO CRUZ   (Brazil)

^c UNIVERSIDAD DE LA REPÚBLICA   (Uruguay)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; BRAZIL; CARIBBEAN ISLANDS; CLINICAL ARTICLE; DENGUE; DENGUE VIRUS 3; E GENE; EPIDEMIC; EVOLUTION; GENE; GENE AMPLIFICATION; GENE SEQUENCE; GENOTYPE; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYLOGEOGRAPHY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; UNINDEXED SEQUENCE; WESTERN HEMISPHERE;

BRAZIL; CLUSTER ANALYSIS; DENGUE; DENGUE VIRUS; GENOTYPE; HUMANS; MOLECULAR EPIDEMIOLOGY; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

EID: 84866926580     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0001784     Document Type: Article

References (44)

1. Gubler DJ, (2002) Epidemic dengue/dengue hemorrhagic fever as a public health, social and economic problem in the 21st century. Trends Microbiol 10: 100-103.
2. Gubler DJ, (1998) Dengue and dengue hemorrhagic fever. Clin Microbiol Rev 11: 480-496.
3. Cologna R, Armstrong PM, Rico-Hesse R, (2005) Selection for virulent dengue viruses occurs in humans and mosquitoes. J Virol 79: 853-859.
4. Rico-Hesse R, (2010) Dengue virus virulence and transmission determinants. Curr Top Microbiol Immunol 338: 45-55.
5. Vu TT, Holmes EC, Duong V, Nguyen TQ, Tran TH, et al. (2010) Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia. PLoS Negl Trop Dis 4: e757.
6. Messer WB, Gubler DJ, Harris E, Sivananthan K, de Silva AM, (2003) Emergence and global spread of a dengue serotype 3, subtype III virus. Emerg Infect Dis 9: 800-809.
7. Dash PK, Parida MM, Saxena P, Abhyankar A, Singh CP, et al. (2006) Reemergence of dengue virus type-3 (subtype-III) in India: implications for increased incidence of DHF & DSS. Virol J 3: 55.
8. Kanakaratne N, Wahala WM, Messer WB, Tissera HA, Shahani A, et al. (2009) Severe dengue epidemics in Sri Lanka, 2003-2006. Emerg Infect Dis 15: 192-199.
9. Dorji T, Yoon IK, Holmes EC, Wangchuk S, Tobgay T, et al. (2009) Diversity and origin of dengue virus serotypes 1, 2, and 3, Bhutan. Emerg Infect Dis 15: 1630-1632.
10. Franco L, Di Caro A, Carletti F, Vapalahti O, Renaudat C, et al. (2010) Recent expansion of dengue virus serotype 3 in West Africa. Euro Surveill 15.
11. Usuku S, Castillo L, Sugimoto C, Noguchi Y, Yogo Y, et al. (2001) Phylogenetic analysis of dengue-3 viruses prevalent in Guatemala during 1996-1998. Arch Virol 146: 1381-1390.
12. Miagostovich MP, dos Santos FB, de Simone TS, Costa EV, Filippis AM, et al. (2002) Genetic characterization of dengue virus type 3 isolates in the State of Rio de Janeiro, 2001. Braz J Med Biol Res 35: 869-872.
13. Peyrefitte CN, Couissinier-Paris P, Mercier-Perennec V, Bessaud M, Martial J, et al. (2003) Genetic characterization of newly reintroduced dengue virus type 3 in Martinique (French West Indies). J Clin Microbiol 41: 5195-5198.
14. Peyrefitte CN, Pastorino BA, Bessaud M, Gravier P, Tock F, et al. (2005) Dengue type 3 virus, Saint Martin, 2003-2004. Emerg Infect Dis 11: 757-761.
15. Rodriguez-Roche R, Alvarez M, Holmes EC, Bernardo L, Kouri G, et al. (2005) Dengue virus type 3, Cuba, 2000-2002. Emerg Infect Dis 11: 773-774.
16. Aquino VH, Anatriello E, Goncalves PF, EV DAS, Vasconcelos PF, et al. (2006) Molecular epidemiology of dengue type 3 virus in Brazil and Paraguay, 2002-2004. Am J Trop Med Hyg 75: 710-715.
17. Kochel T, Aguilar P, Felices V, Comach G, Cruz C, et al. (2008) Molecular epidemiology of dengue virus type 3 in Northern South America: 2000-2005. Infect Genet Evol 8: 682-688.
18. Villabona-Arenas CJ, Miranda-Esquivel DR, Jimenez RE, (2009) Phylogeny of dengue virus type 3 circulating in Colombia between 2001 and 2007. Trop Med Int Health 14: 1241-1250.
19. Araujo JM, Nogueira RM, Schatzmayr HG, Zanotto PM, Bello G, (2009) Phylogeography and evolutionary history of dengue virus type 3. Infect Genet Evol 9: 716-725.
20. CDC (1995) Dengue type 3 infection-Nicaragua and Panama, October-November 1994. MMWR Morb Mortal Wkly Rep 44: 21-24.
21. Guzman MG, Vazquez S, Martinez E, Alvarez M, Rodriguez R, et al. (1996) [Dengue in Nicaragua, 1994: reintroduction of serotype 3 in the Americas]. Bol Oficina Sanit Panam 121: 102-110.
22. Ramirez A, Fajardo A, Moros Z, Gerder M, Caraballo G, et al. (2010) Evolution of dengue virus type 3 genotype III in Venezuela: diversification, rates and population dynamics. Virol J 7: 329.
23. Siqueira JB Jr, Martelli CM, Coelho GE, Simplicio AC, Hatch DL, (2005) Dengue and dengue hemorrhagic fever, Brazil, 1981-2002. Emerg Infect Dis 11: 48-53.
24. Nogueira RM, Miagostovich MP, de Filippis AM, Pereira MA, Schatzmayr HG, (2001) Dengue virus type 3 in Rio de Janeiro, Brazil. Mem Inst Oswaldo Cruz 96: 925-926.
25. Nogueira RM, Schatzmayr HG, de Filippis AM, dos Santos FB, da Cunha RV, et al. (2005) Dengue virus type 3, Brazil, 2002. Emerg Infect Dis 11: 1376-1381.
26. Amarilla AA, de Almeida FT, Jorge DM, Alfonso HL, de Castro-Jorge LA, et al. (2009) Genetic diversity of the E protein of dengue type 3 virus. Virol J 6: 113.
27. Mondini A, de Moraes Bronzoni RV, Nunes SH, Chiaravalloti Neto F, Massad E, et al. (2009) Spatio-temporal tracking and phylodynamics of an urban dengue 3 outbreak in Sao Paulo, Brazil. PLoS Negl Trop Dis 3: e448.
28. Igarashi A, (1978) Isolation of a Singh's Aedes albopictus cell clone sensitive to Dengue and Chikungunya viruses. J Gen Virol 40: 531-544.
29. Gubler DJ, Kuno G, Sather GE, Velez M, Oliver A, (1984) Mosquito cell cultures and specific monoclonal antibodies in surveillance for dengue viruses. Am J Trop Med Hyg 33: 158-165.
30. Miagostovich MP, dos Santos FB, Fumian TM, Guimaraes FR, da Costa EV, et al. (2006) Complete genetic characterization of a Brazilian dengue virus type 3 strain isolated from a fatal outcome. Mem Inst Oswaldo Cruz 101: 307-313.
31. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
32. Posada D, (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
33. Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
34. Guindon S, Lethiec F, Duroux P, Gascuel O, (2005) PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33: W557-559.
35. Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
36. Rambaut A, Drummond A (2007) Tracer v1.4. Available from http://beastbioedacuk/Tracer.
37. Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W, (2002) Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161: 1307-1320.
38. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
39. Lemey P, Rambaut A, Drummond AJ, Suchard MA, (2009) Bayesian phylogeography finds its roots. PLoS Comput Biol 5: e1000520.
40. Drummond AJ, Rambaut A, Shapiro B, Pybus OG, (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22: 1185-1192.
41. Drummond AJ, Ho SY, Phillips MJ, Rambaut A, (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4: e88.
42. Oliveira MF, Galvao Araujo JM, Ferreira OC Jr, Ferreira DF, Lima DB, et al. (2010) Two lineages of dengue virus type 2, Brazil. Emerg Infect Dis 16: 576-578.
43. Romano CM, de Matos AM, Araujo ES, Villas-Boas LS, da Silva WC, et al. (2010) Characterization of Dengue virus type 2: new insights on the 2010 Brazilian epidemic. PLoS One 5: e11811.
44. Nogueira RM, Eppinghaus AL, (2011) Dengue virus type 4 arrives in the state of Rio de Janeiro: a challenge for epidemiological surveillance and control. Mem Inst Oswaldo Cruz 106: 255-256.