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Volumn 40, Issue 17, 2012, Pages 8210-8218

The percentage of bacterial genes on leading versus lagging strands is influenced by multiple balancing forces

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EID: 84866916315     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks605     Document Type: Article
Times cited : (37)

References (37)
  • 1
    • 56949097722 scopus 로고    scopus 로고
    • Evolution of genome architecture
    • Koonin, E.V. (2009) Evolution of genome architecture. Int. J. Biochem. Cell. Biol., 41, 298-306.
    • (2009) Int. J. Biochem. Cell. Biol , vol.41 , pp. 298-306
    • Koonin, E.V.1
  • 2
    • 0036567231 scopus 로고    scopus 로고
    • Pyrococcus genome comparison evidences chromosome shuffling-driven evolution
    • Zivanovic, Y., Lopez, P., Philippe, H. and Forterre, P. (2002) Pyrococcus genome comparison evidences chromosome shuffling-driven evolution. Nucleic Acids Res., 30, 1902-1910. (Pubitemid 34537584)
    • (2002) Nucleic Acids Research , vol.30 , Issue.9 , pp. 1902-1910
    • Zivanovic, Y.1    Lopez, P.2    Philippe, H.3    Forterre, P.4
  • 3
    • 0024276903 scopus 로고
    • When polymerases collide: Replication and the transcriptional organization of the E. coli chromosome
    • Brewer, B.J. (1988) When polymerases collide: replication and the transcriptional organization of the E. coli chromosome. Cell, 53, 679-686.
    • (1988) Cell , vol.53 , pp. 679-686
    • Brewer, B.J.1
  • 4
    • 0026733965 scopus 로고
    • Consequences of replication fork movement through transcription units in vivo
    • French, S. (1992) Consequences of replication fork movement through transcription units in vivo. Science, 258, 1362-1365. (Pubitemid 23007789)
    • (1992) Science , vol.258 , Issue.5086 , pp. 1362-1365
    • French, S.1
  • 5
    • 0042667165 scopus 로고    scopus 로고
    • Essentiality, not expressiveness, drives gene-strand bias in bacteria
    • DOI 10.1038/ng1209
    • Rocha, E.P. and Danchin, A. (2003) Essentiality, not expressiveness, drives gene-strand bias in bacteria. Nat. Genet., 34, 377-378. (Pubitemid 36935329)
    • (2003) Nature Genetics , vol.34 , Issue.4 , pp. 377-378
    • Rocha, E.P.C.1    Danchin, A.2
  • 6
    • 3142679507 scopus 로고    scopus 로고
    • The replication-related organization of bacterial genomes
    • Rocha, E.P. (2004) The replication-related organization of bacterial genomes. Microbiology, 150, 1609-1627. (Pubitemid 38923661)
    • (2004) Microbiology , vol.150 , Issue.6 , pp. 1609-1627
    • Rocha, E.P.C.1
  • 8
    • 34547913808 scopus 로고    scopus 로고
    • Construction of consecutive deletions of the Escherichia coli chromosome
    • Kato, J. and Hashimoto, M. (2007) Construction of consecutive deletions of the Escherichia coli chromosome. Mol. Syst. Biol., 3, 132.
    • (2007) Mol. Syst. Biol , vol.3 , pp. 132
    • Kato, J.1    Hashimoto, M.2
  • 10
    • 20444485193 scopus 로고    scopus 로고
    • Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication
    • DOI 10.1093/nar/gki638
    • Price, M.N., Alm, E.J. and Arkin, A.P. (2005) Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication. Nucleic Acids Res., 33, 3224-3234. (Pubitemid 41194466)
    • (2005) Nucleic Acids Research , vol.33 , Issue.10 , pp. 3224-3234
    • Price, M.N.1    Alm, E.J.2    Arkin, A.P.3
  • 11
    • 0036709941 scopus 로고    scopus 로고
    • Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?
    • DOI 10.1016/S0966-842X(02)02420-4, PII S0966842X02024204
    • Rocha, E. (2002) Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes? Trends Microbiol., 10, 393-395. (Pubitemid 35246261)
    • (2002) Trends in Microbiology , vol.10 , Issue.9 , pp. 393-395
    • Rocha, E.P.C.1
  • 12
    • 34447108347 scopus 로고    scopus 로고
    • Replication-associated purine asymmetry may contribute to strand-biased gene distribution
    • DOI 10.1016/j.ygeno.2007.04.002, PII S0888754307000894
    • Hu, J., Zhao, X. and Yu, J. (2007) Replication-associated purine asymmetry may contribute to strand-biased gene distribution. Genomics, 90, 186-194. (Pubitemid 47030804)
    • (2007) Genomics , vol.90 , Issue.2 , pp. 186-194
    • Hu, J.1    Zhao, X.2    Yu, J.3
  • 13
    • 77952744822 scopus 로고    scopus 로고
    • Functionality of essential genes drives gene strand-bias in bacterial genomes
    • Lin, Y., Gao, F. and Zhang, C.T. (2010) Functionality of essential genes drives gene strand-bias in bacterial genomes. Biochem. Biophys. Res. Commun., 396, 472-476.
    • (2010) Biochem. Biophys. Res. Commun. , vol.396 , pp. 472-476
    • Lin, Y.1    Gao, F.2    Zhang, C.T.3
  • 17
    • 38549134505 scopus 로고    scopus 로고
    • Many Microbe Microarrays Database: Uniformly normalized Affymetrix compendia with structured experimental metadata
    • DOI 10.1093/nar/gkm815
    • Faith, J.J., Driscoll, M.E., Fusaro, V.A., Cosgrove, E.J., Hayete, B., Juhn, F.S., Schneider, S.J. and Gardner, T.S. (2008) Many microbe microarrays database: uniformly normalized affymetrix compendia with structured experimental metadata. Nucleic Acids Res., 36, D866-D870. (Pubitemid 351149837)
    • (2008) Nucleic Acids Research , vol.36 , Issue.SUPPL. 1
    • Faith, J.J.1    Driscoll, M.E.2    Fusaro, V.A.3    Cosgrove, E.J.4    Hayete, B.5    Juhn, F.S.6    Schneider, S.J.7    Gardner, T.S.8
  • 18
    • 41349112730 scopus 로고    scopus 로고
    • Ori-Finder: A web-based system for finding oriCs in unannotated bacterial genomes
    • Gao, F. and Zhang, C.T. (2008) Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes. BMC Bioinformatics, 9, 79.
    • (2008) BMC Bioinformatics , vol.9 , pp. 79
    • Gao, F.1    Zhang, C.T.2
  • 19
    • 76749155783 scopus 로고    scopus 로고
    • The systemic imprint of growth and its uses in ecological (meta)genomics
    • Vieira-Silva, S. and Rocha, E.P. (2010) The systemic imprint of growth and its uses in ecological (meta)genomics. PLoS Genet., 6, e1000808.
    • (2010) PLoS Genet. , vol.6
    • Vieira-Silva, S.1    Rocha, E.P.2
  • 20
    • 78649947901 scopus 로고    scopus 로고
    • Nucleotide compositional asymmetry between the leading and lagging strands of eubacterial genomes
    • Qu, H., Wu, H., Zhang, T., Zhang, Z., Hu, S. and Yu, J. (2010) Nucleotide compositional asymmetry between the leading and lagging strands of eubacterial genomes. Res. Microbiol., 161, 838-846.
    • (2010) Res. Microbiol. , vol.161 , pp. 838-846
    • Qu, H.1    Wu, H.2    Zhang, T.3    Zhang, Z.4    Hu, S.5    Yu, J.6
  • 22
    • 77956881120 scopus 로고    scopus 로고
    • Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5
    • Paul, D., Bridges, S.M., Burgess, S.C., Dandass, Y.S. and Lawrence, M.L. (2010) Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5. BMC Genomics, 11, 511.
    • (2010) BMC Genomics , vol.11 , pp. 511
    • Paul, D.1    Bridges, S.M.2    Burgess, S.C.3    Dandass, Y.S.4    Lawrence, M.L.5
  • 23
    • 77649169704 scopus 로고    scopus 로고
    • Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C.nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion
    • Trost, E., Gotker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehoever, P., Arnold, W., Bekel, T., Blom, J. et al. (2010) Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics, 11, 91.
    • (2010) BMC Genomics , vol.11 , pp. 91
    • Trost, E.1    Gotker, S.2    Schneider, J.3    Schneiker-Bekel, S.4    Szczepanowski, R.5    Tilker, A.6    Viehoever, P.7    Arnold, W.8    Bekel, T.9    Blom, J.10
  • 29
    • 0028871535 scopus 로고
    • Prediction of rib fracture injury outcome by an artificial neural network
    • Dombi, G.W., Nandi, P., Saxe, J.M., Ledgerwood, A.M. and Lucas, C.E. (1995) Prediction of rib fracture injury outcome by an artificial neural network. J. Trauma, 39, 915-921.
    • (1995) J. Trauma , vol.39 , pp. 915-921
    • Dombi, G.W.1    Nandi, P.2    Saxe, J.M.3    Ledgerwood, A.M.4    Lucas, C.E.5
  • 31
    • 77954241658 scopus 로고    scopus 로고
    • The large-scale organization of the bacterial network of ecological co-occurrence interactions
    • Freilich, S., Kreimer, A., Meilijson, I., Gophna, U., Sharan, R. and Ruppin, E. (2010) The large-scale organization of the bacterial network of ecological co-occurrence interactions. Nucleic Acids Res., 38, 3857-3868.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3857-3868
    • Freilich, S.1    Kreimer, A.2    Meilijson, I.3    Gophna, U.4    Sharan, R.5    Ruppin, E.6
  • 33
    • 67649872023 scopus 로고    scopus 로고
    • Transcriptional regulation shapes the organization of genes on bacterial chromosomes
    • Janga, S.C., Salgado, H. and Martinez-Antonio, A. (2009) Transcriptional regulation shapes the organization of genes on bacterial chromosomes. Nucleic Acids Res., 37, 3680-3688.
    • (2009) Nucleic Acids Res , vol.37 , pp. 3680-3688
    • Janga, S.C.1    Salgado, H.2    Martinez-Antonio, A.3
  • 34
    • 58149197597 scopus 로고    scopus 로고
    • DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes
    • Zhang, R. and Lin, Y. (2009) DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes. Nucleic Acids Res., 37, D455-D458.
    • (2009) Nucleic Acids Res , vol.37
    • Zhang, R.1    Lin, Y.2
  • 36
    • 0016367327 scopus 로고
    • Arrangement of subunits in flagellar microtubules
    • Amos, L. and Klug, A. (1974) Arrangement of subunits in flagellar microtubules. J. Cell Sci., 14, 523-549.
    • (1974) J. Cell Sci , vol.14 , pp. 523-549
    • Amos, L.1    Klug, A.2
  • 37
    • 10344248905 scopus 로고    scopus 로고
    • Flagellar motility: All pull together
    • DOI 10.1016/j.cub.2004.11.019, PII S0960982204008875
    • Wemmer, K.A. and Marshall, W.F. (2004) Flagellar motility: all pull together. Curr. Biol., 14, R992-R993. (Pubitemid 39623180)
    • (2004) Current Biology , vol.14 , Issue.23
    • Wemmer, K.A.1    Marshall, W.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.