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Volumn 2012, Issue 8, 2012, Pages 535-544

Evolution of type II antifreeze protein genes in teleost fish: A complex scenario involving lateral gene transfers and episodic directional selection

Author keywords

Antifreeze protein; Episodic directional selection; Lateral gene transfer; Teleostei

Indexed keywords

ANTIFREEZE PROTEIN;

EID: 84866749278     PISSN: None     EISSN: 11769343     Source Type: Journal    
DOI: 10.4137/EBO.S9976     Document Type: Article
Times cited : (14)

References (35)
  • 1
    • 0035052709 scopus 로고    scopus 로고
    • Antifreeze and ice nucleator proteins in terrestrial arthropods
    • Duman JG. Antifreeze and ice nucleator proteins in terrestrial arthropods. Annu Rev Physiol. 2001;63:327-57.
    • (2001) Annu Rev Physiol , vol.63 , pp. 327-357
    • Duman, J.G.1
  • 2
    • 1642331379 scopus 로고    scopus 로고
    • Antifreeze proteins from snow mold fungi
    • Hoshino T, Kiriaki M, Ohgiya S, et al. Antifreeze proteins from snow mold fungi. Can J Bot. 2003;81:1175-81.
    • (2003) Can J Bot , vol.81 , pp. 1175-1181
    • Hoshino, T.1    Kiriaki, M.2    Ohgiya, S.3
  • 3
    • 4344568284 scopus 로고    scopus 로고
    • Antifreeze proteins in overwintering plants: A tale of two activities
    • Griffith M, Yaish MW. Antifreeze proteins in overwintering plants: a tale of two activities. Trends Plant Sci. 2004;9:399-405.
    • (2004) Trends Plant Sci , vol.9 , pp. 399-405
    • Griffith, M.1    Yaish, M.W.2
  • 4
    • 33645503288 scopus 로고    scopus 로고
    • Ice-binding proteins from sea ice diatoms (Bacillariophyceae)
    • Janech MG, Krell A, Mock T, Kang JS, Raymond JA. Ice-binding proteins from sea ice diatoms (Bacillariophyceae). J Phycol. 2006;42:410-6.
    • (2006) J Phycol , vol.42 , pp. 410-416
    • Janech, M.G.1    Krell, A.2    Mock, T.3    Kang, J.S.4    Raymond, J.A.5
  • 5
    • 38849181532 scopus 로고    scopus 로고
    • Structure and evolutionary origin of Ca(25)-dependent herring type II antifreeze protein
    • Liu Y, Li Z, Lin Q, et al. Structure and evolutionary origin of Ca(25)-dependent herring type II antifreeze protein. PLoS ONE. 2007;2(6):e548.
    • (2007) PLoS ONE , vol.2 , Issue.6
    • Liu, Y.1    Li, Z.2    Lin, Q.3
  • 6
    • 34447503551 scopus 로고    scopus 로고
    • An ice-binding protein from an Antarctic sea ice bacterium
    • Raymond JA, Fritsen C, Shen K. An ice-binding protein from an Antarctic sea ice bacterium. FEMS Microbiol Ecol. 2007;61:214-21.
    • (2007) FEMS Microbiol Ecol , vol.61 , pp. 214-221
    • Raymond, J.A.1    Fritsen, C.2    Shen, K.3
  • 7
    • 60349115229 scopus 로고    scopus 로고
    • Novel ice-binding proteins from a psychrophilic antarctic alga (Chlamydomonadaceae, Chlorophyceae)
    • Raymond JA, Janech MG, Fritsen CH. Novel ice-binding proteins from a psychrophilic antarctic alga (Chlamydomonadaceae, Chlorophyceae). J Phycol. 2009;45:130-6.
    • (2009) J Phycol , vol.45 , pp. 130-136
    • Raymond, J.A.1    Janech, M.G.2    Fritsen, C.H.3
  • 8
    • 60549093037 scopus 로고    scopus 로고
    • Ice-binding proteins from enoki and shiitake mushrooms
    • Raymond JA, Janech MG. Ice-binding proteins from enoki and shiitake mushrooms. Cryobiology. 2009;58:151-6.
    • (2009) Cryobiology , vol.58 , pp. 151-156
    • Raymond, J.A.1    Janech, M.G.2
  • 9
    • 77952430130 scopus 로고    scopus 로고
    • Acquisition of freeze protection in a sea-ice crustacean through horizontal gene transfer?
    • Kiko R. Acquisition of freeze protection in a sea-ice crustacean through horizontal gene transfer? Polar Biol. 2009;33:543-56.
    • (2009) Polar Biol , vol.33 , pp. 543-556
    • Kiko, R.1
  • 11
    • 49949083546 scopus 로고    scopus 로고
    • Lateral transfer of a lectin-like antifreeze protein gene in fishes
    • Graham LA, Lougheed SC, Ewart KV, Davies PL. Lateral transfer of a lectin-like antifreeze protein gene in fishes. PLoS ONE. 2008;3(7):e2616.
    • (2008) PLoS ONE , vol.3 , Issue.7
    • Graham, L.A.1    Lougheed, S.C.2    Ewart, K.V.3    Davies, P.L.4
  • 12
    • 77957701580 scopus 로고    scopus 로고
    • A Teleost Classification Based On Monophyletic Groups
    • In: Nelson JS, Schultze HP, Wilson MVH, editors, Munich: Verlag Dr. Friedrich Pfeil
    • Wiley EO, Johnson GD. A Teleost Classification Based On Monophyletic Groups. In: Nelson JS, Schultze HP, Wilson MVH, editors. Origin and Phylogenetic Relationships of Teleosts. Munich: Verlag Dr. Friedrich Pfeil.
    • Origin and Phylogenetic Relationships of Teleosts
    • Wiley, E.O.1    Johnson, G.D.2
  • 13
  • 14
    • 0026772705 scopus 로고
    • Structural and functional similarity between fish antifreeze proteins and calcium-dependent lectins
    • Ewart KV, Rubinsky B, Fletcher GL. Structural and functional similarity between fish antifreeze proteins and calcium-dependent lectins. Biochem Biophys Res Commun. 1992;185:335-40.
    • (1992) Biochem Biophys Res Commun , vol.185 , pp. 335-340
    • Ewart, K.V.1    Rubinsky, B.2    Fletcher, G.L.3
  • 15
    • 77954843377 scopus 로고    scopus 로고
    • Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
    • Abby SS, Tannier E, Gouy M, Daubin V. Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests. BMC Bioinformatics. 2010;11:324.
    • (2010) BMC Bioinformatics , vol.11 , pp. 324
    • Abby, S.S.1    Tannier, E.2    Gouy, M.3    Daubin, V.4
  • 17
    • 77957233168 scopus 로고    scopus 로고
    • Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
    • Delport W, Poon AF, Frost SD, Kosakovsky Pond SL. Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics. 2010;26:2455-7.
    • (2010) Bioinformatics , vol.26 , pp. 2455-2457
    • Delport, W.1    Poon, A.F.2    Frost, S.D.3    Kosakovsky Pond, S.L.4
  • 19
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Kuma KI, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002;30:3059-66.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.I.3    Miyata, T.4
  • 20
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: Improvement in accuracy of multiple sequence alignment
    • Katoh K, Kuma K, Toh H, Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005;33:511-8.
    • (2005) Nucleic Acids Res , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 21
    • 67349147341 scopus 로고    scopus 로고
    • Reconstructing the phylogenetic relationships of the Earth's most diverse clade of freshwater fi{ligature}shes-order Cypriniformes (Actinopterygii: Ostariophysi): A case study using multiple nuclear loci and the mitochondrial genome
    • Mayden RL, Chen WJ, Bart HL, et al. Reconstructing the phylogenetic relationships of the Earth's most diverse clade of freshwater fi{ligature}shes-order Cypriniformes (Actinopterygii: Ostariophysi): a case study using multiple nuclear loci and the mitochondrial genome. Mol Phylogenet Evol. 2009;51: 500-14.
    • (2009) Mol Phylogenet Evol , vol.51 , pp. 500-514
    • Mayden, R.L.1    Chen, W.J.2    Bart, H.L.3
  • 22
    • 33845369799 scopus 로고    scopus 로고
    • Mitogenomic Evolution and Interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): The First Evidence Toward Resolution of Higher-Level Relationships of the World's Largest Freshwater Fish Clade Based on 59 Whole Mitogenome Sequences
    • Saitoh K, Sado T, Mayden RL, et al. Mitogenomic Evolution and Interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): The First Evidence Toward Resolution of Higher-Level Relationships of the World's Largest Freshwater Fish Clade Based on 59 Whole Mitogenome Sequences. J Mol Evol. 2006;63:826-41.
    • (2006) J Mol Evol , vol.63 , pp. 826-841
    • Saitoh, K.1    Sado, T.2    Mayden, R.L.3
  • 23
    • 40849123985 scopus 로고    scopus 로고
    • Molecular phylogenetics of the family Cyprinidae (Actinopterygii: Cypriniformes) as evidenced by sequence variation in the first intron of S7 ribosomal protein-coding gene: Further evidence from a nuclear gene of the systematic chaos in the family
    • He S, Mayden RL, Wang X, et al. Molecular phylogenetics of the family Cyprinidae (Actinopterygii: Cypriniformes) as evidenced by sequence variation in the first intron of S7 ribosomal protein-coding gene: further evidence from a nuclear gene of the systematic chaos in the family. Mol Phylogenet Evol. 2008;46:818-29.
    • (2008) Mol Phylogenet Evol , vol.46 , pp. 818-829
    • He, S.1    Mayden, R.L.2    Wang, X.3
  • 24
    • 0035049036 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of Conger myriaster (Teleostei: Anguilliformes): Novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform families
    • Inoue JG, Miya M, Tsukamoto K, Nishida M. Complete mitochondrial DNA sequence of Conger myriaster (Teleostei: Anguilliformes): novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform families. J Mol Evol. 2001;52:311-20.
    • (2001) J Mol Evol , vol.52 , pp. 311-320
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 25
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
    • Jobb G, von Haeseler A, Strimmer K. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol. 2004; 4:18.
    • (2004) BMC Evol Biol , vol.4 , pp. 18
    • Jobb, G.1    von Haeseler, A.2    Strimmer, K.3
  • 26
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
    • Kishino H, Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. J Mol Evol. 1989;29:170-9.
    • (1989) J Mol Evol , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 27
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol. 1999;16:1114-6.
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 28
    • 41049111540 scopus 로고    scopus 로고
    • Inferring confidence sets of possibly misspecified gene trees
    • Strimmer K, Rambaut A. Inferring confidence sets of possibly misspecified gene trees. Proc Biol Sci. 2002;269:137-42.
    • (2002) Proc Biol Sci , vol.269 , pp. 137-142
    • Strimmer, K.1    Rambaut, A.2
  • 29
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst Biol. 2002;51:492-508.
    • (2002) Syst Biol , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 31
    • 49249122999 scopus 로고    scopus 로고
    • Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences
    • Azuma Y, Kumazawa Y, Miya M, Mabuchi K, Nishida M. Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences. BMC Evol Biol. 2008;8:215.
    • (2008) BMC Evol Biol , vol.8 , pp. 215
    • Azuma, Y.1    Kumazawa, Y.2    Miya, M.3    Mabuchi, K.4    Nishida, M.5
  • 32
    • 85047700164 scopus 로고    scopus 로고
    • The rapid evolution of reproductive proteins
    • Swanson WJ, Vacquier VD. The rapid evolution of reproductive proteins. Nat Rev Genet. 2002;3:137-44.
    • (2002) Nat Rev Genet , vol.3 , pp. 137-144
    • Swanson, W.J.1    Vacquier, V.D.2
  • 33
    • 44449101058 scopus 로고    scopus 로고
    • Evidence that strong positive selection drives neofunctionalization in the tenderly duplicated polyhomeotic genes in Drosophila
    • Beisswanger S, Stephan W. Evidence that strong positive selection drives neofunctionalization in the tenderly duplicated polyhomeotic genes in Drosophila. Proc Natl Acad Sci U S A. 2008;105:5447-52.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 5447-5452
    • Beisswanger, S.1    Stephan, W.2
  • 34
    • 83455221622 scopus 로고    scopus 로고
    • Evolution of antifreeze protein genes in the diatom genus fragilariopsis: Evidence for horizontal gene transfer, gene duplication and episodic diversifying selection
    • Sorhannus U. Evolution of antifreeze protein genes in the diatom genus fragilariopsis: evidence for horizontal gene transfer, gene duplication and episodic diversifying selection. Evol Bioinform Online. 2011;7:279-89.
    • (2011) Evol Bioinform Online , vol.7 , pp. 279-289
    • Sorhannus, U.1
  • 35
    • 0042423587 scopus 로고    scopus 로고
    • Type II antifreeze protein from a mid-latitude freshwater fish, Japaneese Smelt (Hypomesus nipponensis)
    • Yamashita Y, Miura R, Takemoto Y, Tsuda S, Kawahara H, Obata H. Type II antifreeze protein from a mid-latitude freshwater fish, Japaneese Smelt (Hypomesus nipponensis). Biosci Biotechnol Biochem. 2003;67:461-6.
    • (2003) Biosci Biotechnol Biochem , vol.67 , pp. 461-466
    • Yamashita, Y.1    Miura, R.2    Takemoto, Y.3    Tsuda, S.4    Kawahara, H.5    Obata, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.