-
1
-
-
0034671865
-
Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes
-
Riechmann JL, Heard J, Martin G, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 2000; 290:2105-2110.
-
(2000)
Science
, vol.290
, pp. 2105-2110
-
-
Riechmann, J.L.1
Heard, J.2
Martin, G.3
-
2
-
-
0028500824
-
Control of Arabidopsis flower and seed development by the homeotic gene APETALA2
-
Jofuku KD, den Boer BG, Van Montagu M, et al. Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. Plant Cell 1994; 6:1211-1225.
-
(1994)
Plant Cell
, vol.6
, pp. 1211-1225
-
-
Jofuku, K.D.1
den Boer, B.G.2
van Montagu, M.3
-
3
-
-
0029240488
-
Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element
-
Ohme-Takagi M, Shinshi H. Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell 1995; 7:173-182.
-
(1995)
Plant Cell
, vol.7
, pp. 173-182
-
-
Ohme-Takagi, M.1
Shinshi, H.2
-
4
-
-
0036290601
-
DNA-binding specificity of the AP2/ERF domain of Arabidopsis DREBs, transcription factors involved in dehydration-and cold-inducible gene expression
-
Sakuma Y, Liu Q, Dubouzet JG, Abe H, et al. DNA-binding specificity of the AP2/ERF domain of Arabidopsis DREBs, transcription factors involved in dehydration-and cold-inducible gene expression. Biochem Biophys Res Commun 2002; 290: 998-1009.
-
(2002)
Biochem Biophys Res Commun
, vol.290
, pp. 998-1009
-
-
Sakuma, Y.1
Liu, Q.2
Dubouzet, J.G.3
Abe, H.4
-
5
-
-
78651354953
-
Regulation of plant stress response by dehydration responsive element binding (DREB) transcription factors
-
Zhou ML, Ma JT, Pang JF, et al. Regulation of plant stress response by dehydration responsive element binding (DREB) transcription factors. Afr J Biotechnol 2010; 9: 9255-9279.
-
(2010)
Afr J Biotechnol
, vol.9
, pp. 9255-9279
-
-
Zhou, M.L.1
Ma, J.T.2
Pang, J.F.3
-
6
-
-
79951563448
-
Discovery and expression profile analysis of AP2/ERF family genes from Triticum aestivum
-
Zhuang J, Chen JM, Yao QH, et al. Discovery and expression profile analysis of AP2/ERF family genes from Triticum aestivum. Mol Biol Rep 2011; 38: 745-753.
-
(2011)
Mol Biol Rep
, vol.38
, pp. 745-753
-
-
Zhuang, J.1
Chen, J.M.2
Yao, Q.H.3
-
7
-
-
0032417391
-
Nuclear events in ethylene signaling: A transcriptional cascade mediated by ETHYLENEINSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1
-
Solano R, Stepanova A, Chao Q, et al. Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENEINSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1. Genes Dev 1998; 12: 3703-3714.
-
(1998)
Genes Dev
, vol.12
, pp. 3703-3714
-
-
Solano, R.1
Stepanova, A.2
Chao, Q.3
-
8
-
-
0037259469
-
ETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defense
-
Lorenzo O, Piqueras R, Sánchez-Serrano JJ, et al. ETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defense. Plant Cell 2003; 15: 165-178.
-
(2003)
Plant Cell
, vol.15
, pp. 165-178
-
-
Lorenzo, O.1
Piqueras, R.2
Sánchez-Serrano, J.J.3
-
9
-
-
2942645004
-
Ethylene Response Factor1 mediates Arabidopsis resistance to the soilborne fungus Fusarium oxysporum
-
Berrocal-Lobo M, Molina A. Ethylene Response Factor1 mediates Arabidopsis resistance to the soilborne fungus Fusarium oxysporum. Mol Plant-Microbe Interact 2004; 17: 763-770.
-
(2004)
Mol Plant-Microbe Interact
, vol.17
, pp. 763-770
-
-
Berrocal-Lobo, M.1
Molina, A.2
-
10
-
-
0036007581
-
Constitutive expression of ETHYLENE-RESPONSE FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi
-
Berrocal-Lobo M, Molina A, Solano R. Constitutive expression of ETHYLENE-RESPONSE FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. Plant J 2002; 29: 23-32.
-
(2002)
Plant J
, vol.29
, pp. 23-32
-
-
Berrocal-Lobo, M.1
Molina, A.2
Solano, R.3
-
11
-
-
51549112366
-
The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense
-
Pré M, Atallah M, Champion A, et al. The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense. Plant Physiol 2008; 147: 1347-1357.
-
(2008)
Plant Physiol
, vol.147
, pp. 1347-1357
-
-
Pré, M.1
Atallah, M.2
Champion, A.3
-
12
-
-
0032144961
-
Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought-and low gene expression respectively, in Arabidopsis
-
Liu Q, Kasuga M, Sahana Y, et al. Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought-and low gene expression respectively, in Arabidopsis. Plant Cell 1998; 10: 1391-1406.
-
(1998)
Plant Cell
, vol.10
, pp. 1391-1406
-
-
Liu, Q.1
Kasuga, M.2
Sahana, Y.3
-
13
-
-
0032497260
-
An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low temperature responsive gene expression
-
Shinwari ZK, Nakashima K, Miura S, et al. An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low temperature responsive gene expression. Biochem Biophys Res Commun 1998; 250: 161-170.
-
(1998)
Biochem Biophys Res Commun
, vol.250
, pp. 161-170
-
-
Shinwari, Z.K.1
Nakashima, K.2
Miura, S.3
-
14
-
-
0037297787
-
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt-and cold-responsive gene expression
-
Dubouzet JG, Sakuma Y, Ito Y, et al. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt-and cold-responsive gene expression. Plant J 2003; 33: 751-763.
-
(2003)
Plant J
, vol.33
, pp. 751-763
-
-
Dubouzet, J.G.1
Sakuma, Y.2
Ito, Y.3
-
15
-
-
0034016129
-
Organization and expression of two Arabidopsis DREB2 genes encoding DREbinding proteins involved in dehydration-and high-salinityresponsive gene expression
-
Nakashima K, Shinwarim ZK, Sakumam Y, et al. Organization and expression of two Arabidopsis DREB2 genes encoding DREbinding proteins involved in dehydration-and high-salinityresponsive gene expression. Plant Mol Biol 2000; 42: 657-665.
-
(2000)
Plant Mol Biol
, vol.42
, pp. 657-665
-
-
Nakashima, K.1
Shinwarim, Z.K.2
Sakumam, Y.3
-
16
-
-
33751219922
-
Roles of DREB transcription factors in biotic and abiotic stress tolerance in plants
-
Agarwal PK, Agarwal P, Reddy MK, et al. Roles of DREB transcription factors in biotic and abiotic stress tolerance in plants. Plant Cell Rep 2006; 25: 1263-1274.
-
(2006)
Plant Cell Rep
, vol.25
, pp. 1263-1274
-
-
Agarwal, P.K.1
Agarwal, P.2
Reddy, M.K.3
-
17
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
Alonso JM, Stepanova AN, Leisse TJ. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 2003; 301: 653-657.
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
-
18
-
-
16544383025
-
Arabidopsis RAVI is downregulated by brassinosteroid and may act as a negative regulator during plant development
-
Hu YX, Wang YX, Liu XF, et al. Arabidopsis RAVI is downregulated by brassinosteroid and may act as a negative regulator during plant development. Cell Res 2004; 14: 8-15.
-
(2004)
Cell Res
, vol.14
, pp. 8-15
-
-
Hu, Y.X.1
Wang, Y.X.2
Liu, X.F.3
-
19
-
-
33747590336
-
Expression and functional roles of the pepper pathogen-induced transcription factor RAV1 in bacterial disease resistance, and drought and salt stress tolerance
-
Sohn KH, Lee SC, Jung HW, et al. Expression and functional roles of the pepper pathogen-induced transcription factor RAV1 in bacterial disease resistance, and drought and salt stress tolerance. Plant Mol Biol 2006; 61: 897-915.
-
(2006)
Plant Mol Biol
, vol.61
, pp. 897-915
-
-
Sohn, K.H.1
Lee, S.C.2
Jung, H.W.3
-
20
-
-
79951569343
-
Gene structures, classification and expression models of the AP2/EREBP transcription factor family in Rice
-
Sharoni AM, Nuruzzaman M, Satoh K, et al. Gene structures, classification and expression models of the AP2/EREBP transcription factor family in Rice. Plant Cell Physiol 2011; 52: 344-360.
-
(2011)
Plant Cell Physiol
, vol.52
, pp. 344-360
-
-
Sharoni, A.M.1
Nuruzzaman, M.2
Satoh, K.3
-
21
-
-
78651337578
-
PlantTFDB 2.0: Update and improvement of the comprehensive plant transcription factor database
-
Zhang H, Jin JP, Tang L, et al. PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res 2011; 39: 1114-1117.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1114-1117
-
-
Zhang, H.1
Jin, J.P.2
Tang, L.3
-
22
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
doi: 10.1093/molbev/msr121
-
Tamura K, Peterson D, Peterson N, et al. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011; doi: 10.1093/molbev/msr121.
-
(2011)
Mol Biol Evol
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
-
23
-
-
0027968068
-
CLUSTAL W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
24
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
25
-
-
0025953577
-
Predicting the solubility of recombinant proteins in Escherichia coli
-
Wilkinson DL, Harrison RG. Predicting the solubility of recombinant proteins in Escherichia coli. Biotechnol 1991; 9: 443-448.
-
(1991)
Biotechnol
, vol.9
, pp. 443-448
-
-
Wilkinson, D.L.1
Harrison, R.G.2
-
26
-
-
0043122944
-
ExPASy: The proteomics server for in-depth protein knowledge and analysis
-
Gasteiger E, Gattiker A, Hoogland C, et al. ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 2003; 31: 3784-3788.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
-
27
-
-
79955875150
-
Genome-wide atlas of transcription during maize development
-
Sekhon RS, Lin H, Childs KL, et al. Genome-wide atlas of transcription during maize development. Plant J 2011; 66: 553-563.
-
(2011)
Plant J
, vol.66
, pp. 553-563
-
-
Sekhon, R.S.1
Lin, H.2
Childs, K.L.3
-
28
-
-
33646832415
-
Genome-wide analysis of the ERF gene family in Arabidopsis and rice
-
Nakano T, Suzuki K, Fujimura T, et al. Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol 2006; 140: 411-432.
-
(2006)
Plant Physiol
, vol.140
, pp. 411-432
-
-
Nakano, T.1
Suzuki, K.2
Fujimura, T.3
-
29
-
-
32344431966
-
The conserved Ala37 in the ERF/AP2 domain is essential for binding with the DRE element and the GCC box
-
Liu Y, Zhao TJ, Liu JM, et al. The conserved Ala37 in the ERF/AP2 domain is essential for binding with the DRE element and the GCC box. FEBS Lett 2006; 580: 1303-1308.
-
(2006)
FEBS Lett
, vol.580
, pp. 1303-1308
-
-
Liu, Y.1
Zhao, T.J.2
Liu, J.M.3
-
30
-
-
0032530719
-
A novel mode of DNA recognition by a β-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA
-
Allen MD, Yamasaki K, Ohme-Takagi M, et al. A novel mode of DNA recognition by a β-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J 1998; 17: 5484-5496.
-
(1998)
EMBO J
, vol.17
, pp. 5484-5496
-
-
Allen, M.D.1
Yamasaki, K.2
Ohme-Takagi, M.3
-
31
-
-
77955086378
-
Discovery, phylogeny and expression patterns of AP2-like genes in maize
-
Zhuang J, Deng DX, Yao QH, et al. Discovery, phylogeny and expression patterns of AP2-like genes in maize. Plant Growth Regul 2010; 62:51-58.
-
(2010)
Plant Growth Regul
, vol.62
, pp. 51-58
-
-
Zhuang, J.1
Deng, D.X.2
Yao, Q.H.3
-
32
-
-
33847267229
-
PlnTFDB: An integrative plant transcription factor database
-
Riano PDM, Ruzicic S, Dreyer I, et al. PlnTFDB: an integrative plant transcription factor database. BMC Bioinformatics 2007; 8: 42.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 42
-
-
Riano, P.D.M.1
Ruzicic, S.2
Dreyer, I.3
-
33
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillon O, Aury JM, Noel B, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007; 449: 463-467.
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
Aury, J.M.2
Noel, B.3
-
34
-
-
0037446860
-
What happens to genes in duplicated genomes
-
Kellogg EA. What happens to genes in duplicated genomes. Proc Natl Acad Sci USA 2003; 100: 4369-4371.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 4369-4371
-
-
Kellogg, E.A.1
-
35
-
-
14744269229
-
The evolutionary dynamics of plant duplicate genes
-
Moore RC, Purugganan MD. The evolutionary dynamics of plant duplicate genes. Curr Opin Plant Biol 2005; 8: 122-128.
-
(2005)
Curr Opin Plant Biol
, vol.8
, pp. 122-128
-
-
Moore, R.C.1
Purugganan, M.D.2
-
36
-
-
33745088890
-
Intron gain and loss in segmentally duplicated genes in rice
-
Lin H, Zhu W, Silva CJ, et al. Intron gain and loss in segmentally duplicated genes in rice. Genome Biol 2006; 7: 41.
-
(2006)
Genome Biol
, vol.7
, pp. 41
-
-
Lin, H.1
Zhu, W.2
Silva, C.J.3
-
37
-
-
48449102214
-
Sequence and expression analysis of the thioredoxin protein gene family in rice
-
Nuruzzaman M, Gupta M, Zhang C, et al. Sequence and expression analysis of the thioredoxin protein gene family in rice. Mol Genet Genomics 2008; 280: 139-151.
-
(2008)
Mol Genet Genomics
, vol.280
, pp. 139-151
-
-
Nuruzzaman, M.1
Gupta, M.2
Zhang, C.3
-
38
-
-
0030986363
-
The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis
-
Okamuro JK, Caster B, Villarroel R, et al. The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. Proc Natl Acad Sci USA 1997; 94: 7076-7081.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 7076-7081
-
-
Okamuro, J.K.1
Caster, B.2
Villarroel, R.3
-
39
-
-
78650515927
-
Plant AP2/ERF transcription factors
-
Saleh A, Pagés M. Plant AP2/ERF transcription factors. Genetika 2003; 35: 37-50.
-
(2003)
Genetika
, vol.35
, pp. 37-50
-
-
Saleh, A.1
Pagés, M.2
-
40
-
-
0033556230
-
RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants
-
Kagaya Y, Ohmiya K, Hattori T. RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants. Nucleic Acids Res 1999; 27: 470-478.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 470-478
-
-
Kagaya, Y.1
Ohmiya, K.2
Hattori, T.3
-
41
-
-
0036017870
-
Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17 regulation through the drought-responsive element in an ABA-dependent pathway
-
Kizis D, Pagés M. Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17 regulation through the drought-responsive element in an ABA-dependent pathway. Plant J 2002; 30: 679-689.
-
(2002)
Plant J
, vol.30
, pp. 679-689
-
-
Kizis, D.1
Pagés, M.2
-
42
-
-
4644356483
-
Cloning and functional analysis of a novel DREB1/CBF transcription factor involved in cold-responsive gene expression in Zea mays L
-
Qin F, Sakuma Y, Li J, et al. Cloning and functional analysis of a novel DREB1/CBF transcription factor involved in cold-responsive gene expression in Zea mays L. Plant Cell Physiol 2004; 45: 1042-1052.
-
(2004)
Plant Cell Physiol
, vol.45
, pp. 1042-1052
-
-
Qin, F.1
Sakuma, Y.2
Li, J.3
|