A proteomic study of Xanthomonas oryzae pv. oryzae in rice xylem sap

Journal of Proteomics

Volumn 75, Issue 18, 2012, Pages 5911-5919

  González, Juan F ^a   Degrassi, Giuliano ^a   Devescovi, Giulia ^a   De Vleesschauwer, David ^b   Höfte, Monica ^b   Myers, Michael P ^a   Venturi, Vittorio ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

In planta expressed proteins; Protein U; Rice; Secreted proteins; Xanthomonas oryzae

Indexed keywords

VEGETABLE PROTEIN; VIRULENCE FACTOR;

ARTICLE; BACTERIAL VIRULENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; RICE; XANTHOMONAS ORYZAE; XYLEM SAP;

BACTERIAL PROTEINS; ORYZA SATIVA; PLANT DISEASES; PROTEOMICS; XANTHOMONAS; XYLEM;

BACTERIA (MICROORGANISMS); XANTHOMONAS ORYZAE; XANTHOMONAS ORYZAE PV. ORYZAE;

EID: 84866555319     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2012.07.019     Document Type: Article

References (43)

1. Swings J., Van Den Mooter M., Vauterin L., Hoste B., Gillis M., Mew T.W., et al. Reclassification of the Causal Agents of Bacterial Blight (Xanthomonas campestris pv. oryzae) and Bacterial Leaf Streak (Xanthomonas campestris pv. oryzicola) of Rice as Pathovars of Xanthomonas oryzae (ex Ishiyama 1922) sp. nov., nom. rev. Int J Syst Bacteriol 1990, 40:309-311.
2. Mew T.W., Alvarez A.M., Leach J.E., Swings J. Focus on bacterial blight of rice. Plant Dis. 1993, 77:5-12.
3. Shen Y., Ronald P. Molecular determinants of disease and resistance in interactions of Xanthomonas oryzae pv. oryzae and rice. Microbes Infect 2002, 4:1361-1367.
4. Lee B.M., Park Y.J., Park D.S., Kang H.W., Kim J.G., Song E.S., et al. The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice. Nucleic Acids Res 2005, 33:577-586.
5. Nino-Liu D.O., Ronald P.C., Bogdanove A.J. Xanthomonas oryzae pathovars: model pathogens of a model crop. Mol Plant Pathol 2006, 7:303-324.
6. Buttner D., Bonas U. Regulation and secretion of Xanthomonas virulence factors. FEMS Microbiol Rev 2010, 34:107-133.
7. Paper J.M., Scott-Craig J.S., Adhikari N.D., Cuomo C.A., Walton J.D. Comparative proteomics of extracellular proteins in vitro and in planta from the pathogenic fungus Fusarium graminearum. Proteomics 2007, 7:3171-3183.
8. Watt S.A., Wilke A., Patschkowski T., Niehaus K. Comprehensive analysis of the extracellular proteins from Xanthomonas campestris pv. campestris B100. Proteomics 2005, 5:153-167.
9. Smolka M.B., Martins-de-Souza D., Winck F.V., Santoro C.E., Castellari R.R., Ferrari F., et al. Proteome analysis of the plant pathogen Xylella fastidiosa reveals major cellular and extracellular proteins and a peculiar codon bias distribution. Proteomics 2003, 3:224-237.
10. Mehta A., Rosato Y.B. Differentially expressed proteins in the interaction of Xanthomonas axonopodis pv. citri with leaf extract of the host plant. Proteomics 2001, 1:1111-1118.
11. Tahara S.T., Mehta A., Rosato Y.B. Proteins induced by Xanthomonas axonopodis pv. passiflorae with leaf extract of the host plant (Passiflorae edulis). Proteomics 2003, 3:95-102.
12. Chung W.-J., Shu H.-Y., Lu C.-Y., Wu C.-Y., Tseng Y.-H., Tsai S.-F., et al. Qualitative and comparative proteomic analysis of Xanthomonas campestris pv. campestris 17. Proteomics 2007, 7:2047-2058.
13. Goo E., Kang Y., Kim H., Hwang I. Proteomic Analysis of Quorum Sensing-dependent Proteins in Burkholderia glumae. J Proteome Res 2010, 9:3184-3199.
14. Mahmood T., Jan A., Kakishima M., Komatsu S. Proteomic analysis of bacterial-blight defense-responsive proteins in rice leaf blades. Proteomics 2006, 6:6053-6065.
15. Yu C.L., Yan S.P., Wang C.C., Hu H.T., Sun W.N., Yan C.Q., et al. Pathogenesis-related proteins in somatic hybrid rice induced by bacterial blight. Phytochemistry 2008, 69:1989-1996.
16. Chen F., Yuan Y., Li Q., He Z. Proteomic analysis of rice plasma membrane reveals proteins involved in early defense response to bacterial blight. Proteomics 2007, 7:1529-1539.
17. Ferluga S., Bigiriman J., Höfte M., Venturi V. A LuxR homologue of Xanthomonas oryzae pv. oryzae is required for optimal rice virulence. Mol Plant Pathol 2007, 8:529-538.
18. Ferluga S., Venturi V. OryR Is a LuxR-Family Protein Involved in Interkingdom Signaling between Pathogenic Xanthomonas oryzae pv. oryzae and Rice. J Bacteriol 2009, 191:890-897.
19. Jha G., Rajeshwari R., Sonti R.V. Functional interplay between two Xanthomonas oryzae pv, oryzae secretion systems in modulating virulence on rice. Mol Plant Microbe Interact 2007, 20:31-40.
20. Tsuge S., Furutani A., Fukunaka R., Oku T., Tsuno K., Ochiai H., et al. Expression of Xanthomonas oryzae pv. oryzae hrp Genes in XOM2, a Novel Synthetic Medium. J Gen Plant Pathol 2002, 68:363-371.
21. Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol 1983, 166:557-580.
22. Sambrook J., Fritsch E.F., Maniatis T. Molecular cloning: a laboratory manual 1989.
23. Better M., Lewis B., Corbin D., Ditta G., Helinski D.R. Structural relationships among Rhizobium meliloti symbiotic promoters. Cell 1983, 35:479-485.
24. γ Chorismate Mutase That Is Involved in Rice Virulence. Phytopathology 2010, 100:262-270.
25. Kauffman H.E., Reddy A.P.K., Hsieh S.P.Y., Merca S.D. An improved technique for evaluation of resistance rice varieties to Xanthomonas oryzae. Plant Dis Rep 1973, 57:537-541.
26. Ross P.L., Huang Y.N., Marchese J.N., Williamson B., Parker K., Hattan S., et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 2004, 3:1154-1169.
27. Rappsilber J., Ishihama Y., Mann M. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem 2003, 75:663-670.
28. Elias J.E., Gygi S.P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods 2007, 4:207-214.
29. White T.J., Gonzalez C.F. Application of Electroporation for Efficient Transformation of Xanthomonas campestris pv oryzae. Phytopathology 1991, 81:521-524.
30. Ishihama Y., Oda Y., Tabata T., Sato T., Nagasu T., Rappsilber J., et al. Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol Cell Proteomics 2005, 4:1265-1272.
31. Petersen T.N., Brunak S., von Heijne G., Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 2011, 8:785-786.
32. Subramoni S., Sonti R.V. Growth deficiency of a Xanthomonas oryzae pv. oryzae fur mutant in rice leaves is rescued by ascorbic acid supplementation. Mol Plant Microbe Interact 2005, 18:644-651.
33. Xu J., Wu M., He C. Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae. Wei Sheng Wu Xue Bao 2010, 50:155-161.
34. Tondo M.L., Petrocelli S., Ottado J., Orellano E.G. The monofunctional catalase KatE of Xanthomonas axonopodis pv. citri is required for full virulence in citrus plants. PLoS One 2010, 5:e10803.
35. Green J., Paget M.S. Bacterial redox sensors. Nat Rev Microbiol 2004, 2:954-966.
36. Ray S.K., Rajeshwari R., Sharma Y., Sonti R.V. A high-molecular-weight outer membrane protein of Xanthomonas oryzae pv. oryzae exhibits similarity to non-fimbrial adhesins of animal pathogenic bacteria and is required for optimum virulence. Mol Microbiol 2002, 46:637-647.
37. Bordes P., Lavatine L., Phok K., Barriot R., Boulanger A., Castanie-Cornet M.P., et al. Insights into the extracytoplasmic stress response of Xanthomonas campestris pv. campestris: role and regulation of {sigma}E-dependent activity. J Bacteriol 2011, 193:246-264.
38. Gurlebeck D., Thieme F., Bonas U. Type III effector proteins from the plant pathogen Xanthomonas and their role in the interaction with the host plant. J Plant Physiol 2006, 163:233-255.
39. Furutani A., Tsuge S., Ohnishi K., Hikichi Y., Oku T., Tsuno K., et al. Evidence for HrpXo-dependent expression of type II secretory proteins in Xanthomonas oryzae pv. oryzae. J Bacteriol 2004, 186:1374-1380.
40. Kunze G., Zipfel C., Robatzek S., Niehaus K., Boller T., Felix G. The N terminus of bacterial elongation factor Tu elicits innate immunity in Arabidopsis plants. Plant Cell 2004, 16:3496-3507.
41. Gollop R., Inouye M., Inouye S. Protein U a late-developmental spore coat protein of Myxococcus xanthus, is a secretory protein. J Bacteriol 1991, 173:3597-3600.
42. Tomaras A.P., Dorsey C.W., Edelmann R.E., Actis L.A. Attachment to and biofilm formation on abiotic surfaces by Acinetobacter baumannii: involvement of a novel chaperone-usher pili assembly system. Microbiology 2003, 149:3473-3484.
43. Mauriello E.M., Mouhamar F., Nan B., Ducret A., Dai D., Zusman D.R., et al. Bacterial motility complexes require the actin-like protein, MreB and the Ras homologue, MglA. EMBO J 2010, 29:315-326.