메뉴 건너뛰기




Volumn 287, Issue 39, 2012, Pages 32381-32393

The mitosis and neurodevelopment proteins NDE1 and NDEl1 form dimers, tetramers, and polymers with a folded back structure in solution

Author keywords

[No Author keywords available]

Indexed keywords

BACK-STRUCTURE; BIOPHYSICAL DATA; C-TERMINAL DOMAINS; C-TERMINAL REGIONS; CHAIN-LIKE; CHEMICAL CROSS-LINKING; COILED-COIL DOMAINS; DATABASE SEARCHING; DISORDERED REGIONS; ENCODED PROTEINS; FULL-LENGTH PROTEINS; HELICAL COILED-COIL; HOMOLOGY MODELING; ISOTOPE LABELING; N-TERMINALS; NEEDLE-LIKE; NEURODEVELOPMENT; NUCLEAR DISTRIBUTION; PARALOGS; SEQUENCE SIMILARITY; STRUCTURAL ARCHITECTURE; TETRAMERS; TRYPTIC DIGESTION; X-RAY DIFFRACTION STUDIES;

EID: 84866546052     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M112.393439     Document Type: Article
Times cited : (30)

References (54)
  • 2
    • 0034618076 scopus 로고    scopus 로고
    • The LIS1-related NUDF protein of Aspergillus nidulans interacts with the coiled-coil domain of the NUDE/RO11 protein
    • DOI 10.1083/jcb.150.3.681
    • Efimov, V. P., and Morris, N. R. (2000) The LIS1-related NUDF protein of Aspergillus nidulans interacts with the coiled-coil domain of the NUDE/RO11 protein. J. Cell Biol. 150, 681-688 (Pubitemid 30641409)
    • (2000) Journal of Cell Biology , vol.150 , Issue.3 , pp. 681-688
    • Efimov, V.P.1    Morris, N.R.2
  • 4
    • 84856118476 scopus 로고    scopus 로고
    • DISC1-binding proteins in neural development, signalling and schizophrenia
    • Bradshaw, N. J., and Porteous, D. J. (2012) DISC1-binding proteins in neural development, signalling and schizophrenia. Neuropharmacology 62, 1230-1241
    • (2012) Neuropharmacology , vol.62 , pp. 1230-1241
    • Bradshaw, N.J.1    Porteous, D.J.2
  • 5
    • 35948969808 scopus 로고    scopus 로고
    • The Structure of the Coiled-Coil Domain of Ndel1 and the Basis of Its Interaction with Lis1, the Causal Protein of Miller-Dieker Lissencephaly
    • DOI 10.1016/j.str.2007.09.015, PII S0969212607003425
    • Derewenda, U., Tarricone, C., Choi, W. C., Cooper, D. R., Lukasik, S., Perrina, F., Tripathy, A., Kim, M. H., Cafiso, D. S., Musacchio, A., and Derewenda, Z. S. (2007) The structure of the coiled-coil domain of Ndel1 and the basis of its interaction with Lis1, the causal protein of Miller-Dieker lissencephaly. Structure 15, 1467-1481 (Pubitemid 350064493)
    • (2007) Structure , vol.15 , Issue.11 , pp. 1467-1481
    • Derewenda, U.1    Tarricone, C.2    Choi, W.C.3    Cooper, D.R.4    Lukasik, S.5    Perrina, F.6    Tripathy, A.7    Kim, M.H.8    Cafiso, D.S.9    Musacchio, A.10    Derewenda, Z.S.11
  • 7
    • 0037315489 scopus 로고    scopus 로고
    • Human Nudel and NudE as regulators of cytoplasmic dynein in poleward protein transport along the mitotic spindle
    • DOI 10.1128/MCB.23.4.1239-1250.2003
    • Yan, X., Li, F., Liang, Y., Shen, Y., Zhao, X., Huang, Q., and Zhu, X. (2003) Human Nudel and NudE as regulators of cytoplasmic dynein in poleward protein transport along the mitotic spindle. Mol. Cell. Biol. 23, 1239-1250 (Pubitemid 36177034)
    • (2003) Molecular and Cellular Biology , vol.23 , Issue.4 , pp. 1239-1250
    • Yan, X.1    Li, F.2    Liang, Y.3    Shen, Y.4    Zhao, X.5    Huang, Q.6    Zhu, X.7
  • 8
    • 9644259058 scopus 로고    scopus 로고
    • Coupling PAF signaling to dynein regulation: Structure of LIS1 in complex with PAF-acetylhydrolase
    • DOI 10.1016/j.neuron.2004.11.019, PII S0896627304007512
    • Tarricone, C., Perrina, F., Monzani, S., Massimiliano, L., Kim, M. H., Derewenda, Z. S., Knapp, S., Tsai, L. H., and Musacchio, A. (2004) Coupling PAF signaling to dynein regulation. Structure of LIS1 in complex with PAF-acetylhydrolase. Neuron 44, 809-821 (Pubitemid 39575634)
    • (2004) Neuron , vol.44 , Issue.5 , pp. 809-821
    • Tarricone, C.1    Perrina, F.2    Monzani, S.3    Massimiliano, L.4    Kim, M.-H.5    Derewenda, Z.S.6    Knapp, S.7    Tsai, L.-H.8    Musacchio, A.9
  • 12
    • 0034520636 scopus 로고    scopus 로고
    • NUDEL is a novel Cdk5 substrate that associates with LIS1 and cytoplasmic dynein
    • DOI 10.1016/S0896-6273(00)00147-1
    • Niethammer, M., Smith, D. S., Ayala, R., Peng, J., Ko, J., Lee, M. S., Morabito, M., and Tsai, L. H. (2000) NUDEL is a novel Cdk5 substrate that associates with LIS1 and cytoplasmic dynein. Neuron 28, 697-711 (Pubitemid 32038065)
    • (2000) Neuron , vol.28 , Issue.3 , pp. 697-711
    • Niethammer, M.1    Smith, D.S.2    Ayala, R.3    Peng, J.4    Ko, J.5    Lee, M.-S.6    Morabito, M.7    Tsai, L.-H.8
  • 14
    • 1242285142 scopus 로고    scopus 로고
    • Nudel functions in membrane traffic mainly through association with Lis1 and cytoplasmic dynein
    • DOI 10.1083/jcb.200308058
    • Liang, Y., Yu, W., Li, Y., Yang, Z., Yan, X., Huang, Q., and Zhu, X. (2004) Nudel functions in membrane traffic mainly through association with Lis1 and cytoplasmic dynein. J. Cell Biol. 164, 557-566 (Pubitemid 38233317)
    • (2004) Journal of Cell Biology , vol.164 , Issue.4 , pp. 557-566
    • Liang, Y.1    Yu, W.2    Li, Y.3    Yang, Z.4    Yan, X.5    Huang, Q.6    Zhu, X.7
  • 15
    • 31944437434 scopus 로고    scopus 로고
    • Nudel contributes to microtubule anchoring at the mother centriole and is involved in both dynein-dependent and -independent centrosomal protein assembly
    • DOI 10.1091/mbc.E05-04-0360
    • Guo, J., Yang, Z., Song, W., Chen, Q., Wang, F., Zhang, Q., and Zhu, X. (2006) Nudel contributes to microtubule anchoring at the mother centriole and is involved in both dynein-dependent and -independent centrosomal protein assembly. Mol. Biol. Cell 17, 680-689 (Pubitemid 43191103)
    • (2006) Molecular Biology of the Cell , vol.17 , Issue.2 , pp. 680-689
    • Guo, J.1    Yang, Z.2    Song, W.3    Chen, Q.4    Wang, F.5    Zhang, Q.6    Zhu, X.7
  • 19
    • 78650941122 scopus 로고    scopus 로고
    • Identification of a novel dynein binding domain in nudel essential for spindle pole organization in Xenopus egg extract
    • Wang, S., and Zheng, Y. (2011) Identification of a novel dynein binding domain in nudel essential for spindle pole organization in Xenopus egg extract. J. Biol. Chem. 286, 587-593
    • (2011) J. Biol. Chem. , vol.286 , pp. 587-593
    • Wang, S.1    Zheng, Y.2
  • 21
    • 79851513173 scopus 로고    scopus 로고
    • The beginning of a beautiful friendship. Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
    • Rappsilber, J. (2011) The beginning of a beautiful friendship. Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes. J. Struct. Biol. 173, 530-540
    • (2011) J. Struct. Biol. , vol.173 , pp. 530-540
    • Rappsilber, J.1
  • 23
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 25
    • 34548183872 scopus 로고    scopus 로고
    • Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
    • DOI 10.1038/nprot.2007.261, PII NPROT.2007.261
    • Rappsilber, J., Mann, M., and Ishihama, Y. (2007) Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat. Protoc. 2, 1896-1906 (Pubitemid 47308128)
    • (2007) Nature Protocols , vol.2 , Issue.8 , pp. 1896-1906
    • Rappsilber, J.1    Mann, M.2    Ishihama, Y.3
  • 26
    • 0037317228 scopus 로고    scopus 로고
    • Stop And Go Extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
    • DOI 10.1021/ac026117i
    • Rappsilber, J., Ishihama, Y., and Mann, M. (2003) Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal. Chem. 75, 663-670 (Pubitemid 36176744)
    • (2003) Analytical Chemistry , vol.75 , Issue.3 , pp. 663-670
    • Rappsilber, J.1    Ishihama, Y.2    Mann, M.3
  • 28
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox, J., and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367-1372
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 29
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • DOI 10.1006/jmbi.1993.1626
    • Sali, A., and Blundell, T. L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234, 779-815 (Pubitemid 24007801)
    • (1993) Journal of Molecular Biology , vol.234 , Issue.3 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 30
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 31
    • 0025398721 scopus 로고
    • WHAT IF. A molecular modeling and drug design program
    • Vriend, G. (1990) WHAT IF. A molecular modeling and drug design program. J. Mol. Graphics 8, 52-56, 29
    • (1990) J. Mol. Graphics , vol.8
    • Vriend, G.1
  • 32
    • 0033377664 scopus 로고    scopus 로고
    • EMAN: Semiautomated software for high-resolution single-particle reconstructions
    • DOI 10.1006/jsbi.1999.4174
    • Ludtke, S. J., Baldwin, P. R., and Chiu, W. (1999) EMAN. Semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 128, 82-97 (Pubitemid 30013436)
    • (1999) Journal of Structural Biology , vol.128 , Issue.1 , pp. 82-97
    • Ludtke, S.J.1    Baldwin, P.R.2    Chiu, W.3
  • 34
    • 43049167463 scopus 로고    scopus 로고
    • Insolubility of disrupted-in-schizophrenia 1 disrupts oligomer-dependent interactions with nuclear distribution element 1 and is associated with sporadic mental disease
    • Leliveld, S. R., Bader, V., Hendriks, P., Prikulis, I., Sajnani, G., Requena, J. R., and Korth, C. (2008) Insolubility of disrupted-in-schizophrenia 1 disrupts oligomer-dependent interactions with nuclear distribution element 1 and is associated with sporadic mental disease. J. Neurosci. 28, 3839-3845
    • (2008) J. Neurosci. , vol.28 , pp. 3839-3845
    • Leliveld, S.R.1    Bader, V.2    Hendriks, P.3    Prikulis, I.4    Sajnani, G.5    Requena, J.R.6    Korth, C.7
  • 35
    • 83755181444 scopus 로고    scopus 로고
    • Molecular characterization of disrupted in schizophrenia-1 risk variant S704C reveals the formation of altered oligomeric assembly
    • Narayanan, S., Arthanari, H., Wolfe, M. S., and Wagner, G. (2011) Molecular characterization of disrupted in schizophrenia-1 risk variant S704C reveals the formation of altered oligomeric assembly. J. Biol. Chem. 286, 44266-44276
    • (2011) J. Biol. Chem. , vol.286 , pp. 44266-44276
    • Narayanan, S.1    Arthanari, H.2    Wolfe, M.S.3    Wagner, G.4
  • 36
    • 0034517593 scopus 로고    scopus 로고
    • LIS1 regulates CNS lamination by interacting with mNudE, a central component of the centrosome
    • DOI 10.1016/S0896-6273(00)00145-8
    • Feng, Y., Olson, E. C., Stukenberg, P. T., Flanagan, L. A., Kirschner, M. W., and Walsh, C. A. (2000) LIS1 regulates CNS lamination by interacting with mNudE, a central component of the centrosome. Neuron 28, 665-679 (Pubitemid 32038063)
    • (2000) Neuron , vol.28 , Issue.3 , pp. 665-679
    • Feng, Y.1    Olson, E.C.2    Stukenberg, P.T.3    Flanagan, L.A.4    Kirschner, M.W.5    Walsh, C.A.6
  • 37
    • 16644385314 scopus 로고    scopus 로고
    • Remorins form a novel family of coiled coil-forming oligomeric and filamentous proteins associated with apical, vascular and embryonic tissues in plants
    • DOI 10.1007/s11103-004-1520-4
    • Bariola, P. A., Retelska, D., Stasiak, A., Kammerer, R. A., Fleming, A., Hijri, M., Frank, S., and Farmer, E. E. (2004) Remorins form a novel family of coiled-coil-forming oligomeric and filamentous proteins associated with apical, vascular and embryonic tissues in plants. Plant Mol. Biol. 55, 579-594 (Pubitemid 40653986)
    • (2004) Plant Molecular Biology , vol.55 , Issue.4 , pp. 579-594
    • Bariola, P.A.1    Retelska, D.2    Stasiak, A.3    Kammerer, R.A.4    Fleming, A.5    Hijri, M.6    Frank, S.7    Farmer, E.E.8
  • 38
    • 47749144375 scopus 로고    scopus 로고
    • Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters
    • Kalkhof, S., and Sinz, A. (2008) Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters. Anal. Bioanal. Chem. 392, 305-312
    • (2008) Anal. Bioanal. Chem. , vol.392 , pp. 305-312
    • Kalkhof, S.1    Sinz, A.2
  • 39
    • 55249096652 scopus 로고    scopus 로고
    • Ndel1 alters its conformation by sequestering cAMP-specific phosphodiesterase-4D3 (PDE4D3) in a manner that is dynamically regulated through protein kinase A (PKA)
    • Collins, D. M., Murdoch, H., Dunlop, A. J., Charych, E., Baillie, G. S., Wang, Q., Herberg, F. W., Brandon, N., Prinz, A., and Houslay, M. D. (2008) Ndel1 alters its conformation by sequestering cAMP-specific phosphodiesterase- 4D3 (PDE4D3) in a manner that is dynamically regulated through protein kinase A (PKA). Cell Signal. 20, 2356-2369
    • (2008) Cell Signal. , vol.20 , pp. 2356-2369
    • Collins, D.M.1    Murdoch, H.2    Dunlop, A.J.3    Charych, E.4    Baillie, G.S.5    Wang, Q.6    Herberg, F.W.7    Brandon, N.8    Prinz, A.9    Houslay, M.D.10
  • 40
    • 84964596705 scopus 로고    scopus 로고
    • Ndel1-derived peptides modulate bidirectional transport of injected beads in the squid giant axon
    • Segal, M., Soifer, I., Petzold, H., Howard, J., Elbaum, M., and Reiner, O. (2012) Ndel1-derived peptides modulate bidirectional transport of injected beads in the squid giant axon. Biol. Open 1, 220-231
    • (2012) Biol. Open , vol.1 , pp. 220-231
    • Segal, M.1    Soifer, I.2    Petzold, H.3    Howard, J.4    Elbaum, M.5    Reiner, O.6
  • 45
    • 0034520597 scopus 로고    scopus 로고
    • A LIS1/NUDEL/cytoplasmic dynein heavy chain complex in the developing and adult nervous system
    • DOI 10.1016/S0896-6273(00)00146-X
    • Sasaki, S., Shionoya, A., Ishida, M., Gambello, M. J., Yingling, J., Wynshaw-Boris, A., and Hirotsune, S. (2000) A LIS1/NUDEL/cytoplasmic dynein heavy chain complex in the developing and adult nervous system. Neuron 28, 681-696 (Pubitemid 32038064)
    • (2000) Neuron , vol.28 , Issue.3 , pp. 681-696
    • Sasaki, S.1    Shionoya, A.2    Ishida, M.3    Gambello, M.J.4    Yingling, J.5    Wynshaw-Boris, A.6    Hirotsune, S.7
  • 47
    • 73849148044 scopus 로고    scopus 로고
    • Functional interplay between LIS1, NDE1 and NDEL1 in dyne-independent organelle positioning
    • Lam, C., Vergnolle, M. A., Thorpe, L., Woodman, P. G., and Allan, V. J. (2010) Functional interplay between LIS1, NDE1 and NDEL1 in dyne-independent organelle positioning. J. Cell Sci. 123, 202-212
    • (2010) J. Cell Sci. , vol.123 , pp. 202-212
    • Lam, C.1    Vergnolle, M.A.2    Thorpe, L.3    Woodman, P.G.4    Allan, V.J.5
  • 53
    • 51649107017 scopus 로고    scopus 로고
    • Rare chromosomal deletions and duplications increase risk of schizophrenia
    • International Schizophrenia Consortium
    • International Schizophrenia Consortium. (2008) Rare chromosomal deletions and duplications increase risk of schizophrenia. Nature 455, 237-241
    • (2008) Nature , vol.455 , pp. 237-241
  • 54
    • 64549147485 scopus 로고    scopus 로고
    • Support for the involvement of large copy number variants in the pathogenesis of schizophrenia
    • International Schizophrenia Consortium, Wellcome Trust Case Control Consortium
    • Kirov, G., Grozeva, D., Norton, N., Ivanov, D., Mantripragada, K. K., Holmans, P., International Schizophrenia Consortium, Wellcome Trust Case Control Consortium, Craddock, N., Owen, M. J., and O'Donovan, M. C. (2009) Support for the involvement of large copy number variants in the pathogenesis of schizophrenia. Hum. Mol. Genet. 18, 1497-1503
    • (2009) Hum. Mol. Genet. , vol.18 , pp. 1497-1503
    • Kirov, G.1    Grozeva, D.2    Norton, N.3    Ivanov, D.4    Mantripragada, K.K.5    Holmans, P.6    Craddock, N.7    Owen, M.J.8    O'Donovan, M.C.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.