CytoSPADE: High-performance analysis and visualization of high-dimensional cytometry data

Bioinformatics

Volumn 28, Issue 18, 2012, Pages 2400-2401

  Linderman, Michael D ^a,b   Bjornson, Zach ^c   Simonds, Erin F ^c   Qiu, Peng ^c,d   Bruggner, Robert V ^c   Sheode, Ketaki ^c   Meng, Teresa H ^a   Plevritis, Sylvia K ^c   Nolan, Garry P ^c  

^a Stanford University   (United States)

^b MOUNT SINAI SCHOOL OF MEDICINE   (United States)

^c STANFORD UNIVERSITY   (United States)

^d UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER GRAPHICS; COMPUTER PROGRAM; FLOW CYTOMETRY; METHODOLOGY;

ALGORITHMS; COMPUTER GRAPHICS; FLOW CYTOMETRY; SOFTWARE;

EID: 84866453621     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts425     Document Type: Article

References (6)

1. Bendall,S.C. et al. (2011) Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science, 332, 687-696.
2. Cline,M.S. et al. (2007) Integration of biological networks and gene expression data using Cytoscape. Nat. Protoc., 2, 2366-2382.
3. Hahne,F. et al. (2009) flowCore: a Bioconductor package for high throughput flow cytometry. BMC Bioinformatics, 10, 106.
4. Kotecha,N. et al. (2010) Web-based analysis and publication of flow cytometry experiments. Curr. Protoc. Cytom., Chapter 10, Unit10.17.
5. Lo,K. et al. (2009) flowClust: a Bioconductor package for automated gating of flow cytometry data. BMC Bioinformatics, 10, 145.
6. Qiu,P. et al. (2011) Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE. Nat. Biotechnol., 29, 886-891.