Web-based analysis and publication of flow cytometry experiments

Current Protocols in Cytometry

Volumn , Issue SUPPL. 53, 2010, Pages

  Kotecha, Nikesh ^a,b   Krutzik, Peter O ^a,b   Irish, Jonathan M ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b STANFORD UNIVERSITY   (United States)

Author keywords

analysis; Cytobank; database; flow cytometry; storage platform

Indexed keywords

ACCESS TO INFORMATION; COMPUTER PROGRAM; DATA ANALYSIS; FLOW CYTOMETRY; INFORMATION PROCESSING; INTERNET; ONLINE SYSTEM; PRIORITY JOURNAL; REVIEW; WEB BROWSER; COOPERATION; DATA BASE; INFORMATION DISSEMINATION; PHOSPHORYLATION; PROCEDURES; PUBLISHING; SIGNAL TRANSDUCTION;

COOPERATIVE BEHAVIOR; DATABASES AS TOPIC; FLOW CYTOMETRY; INFORMATION DISSEMINATION; INTERNET; PHOSPHORYLATION; PUBLISHING; SIGNAL TRANSDUCTION;

EID: 77954197414     PISSN: 19349297     EISSN: 19349300     Source Type: Journal    
DOI: 10.1002/0471142956.cy1017s53     Document Type: Review

References (14)

1. Barrett, T., Troup, D.B., Wilhite, S.E., Ledoux, P., Rudnev, D., Evangelista, C., Kim, I.F., Soboleva, A., Tomashevsky, M., Marshall, K.A., Phillippy, K.H., Sherman, P.M., Muertter, R.N., and, Edgar, R., 2009. NCBI GEO: Archive for high-throughput functional genomic data. Nucleic Acids Res. 37: 885 - 890.
2. Demeter, J., Beauheim, C., Gollub, J., Hernandez-Boussard, T., Jin, H., Maier, D., Matese, J.C., Nitzberg, M., Wymore, F., Zachariah, Z.K., Brown, P.O., Sherlock, G., and, Ball, C.A., 2007. The Stanford Microarray Database: Implementation of new analysis tools and open source release of software. Nucleic Acids Res. 35: 766 - 770.
3. Frelinger, J., Kepler, T.B., and, Chan, C., 2008. Flow: Statistics, visualization and informatics for flow cytometry. Biol. Med. 3: 10.
4. Hahne, F., LeMeur, N., Brinkman, R.R., Ellis, B., Haaland, P., Sarkar, D., Spidlen, J., Strain, E., and, Gentleman, R., 2009. FlowCore: A bioconductor package for high throughput flow cytometry. BMC Bioinformatics 10: 106.
5. Irish, J.M., Hovland, R., Krutzik, P.O., Perez, O.D., Bruserud, Ø., Gjertsen, B.T., and, Nolan, G.P., 2004. Single cell profiling of potentiated phospho-protein networks in cancer cells. Cell 118: 217 - 228.
6. Irish, J.M., Kotecha, N., and, Nolan, G.P., 2006. Mapping normal and cancer cell signaling networks: Towards single-cell proteomics. Nat. Rev. Cancer 6: 146 - 155.
7. Krutzik, P.O., and, Nolan, G.P., 2003. Intracellular phospho-protein staining techniques for flow cytometry: Monitoring single cell signaling events. Cytometry A 55: 61 - 70.
8. Krutzik, P.O., and, Nolan, G.P., 2006. Fluorescent cell barcoding in flow cytometry allows high-throughput drug screening and signaling profiling. Nat. Methods 3: 361 - 368.
9. Sachs, K., Perez, O., Peer, D., Lauffenburger, D.A., and, Nolan, G.P., 2005. Causal protein-signaling networks derived from multiparameter single-cell data. Science 308: 523 - 529.
10. http://www.cytobank.org This is the home page for Cytobank with links for logging in and registration, getting started, and to the latest documentation.
11. http://docs.cytobank.org This is the documentation site for Cytobank with links to the latest tutorials and frequently asked questions.
12. http://www.mozilla.org This is the homepage for Mozilla, creators of the FireFox Web browser. Cytobank works best with FireFox.
13. http://www.java.com This is the homepage for Java, with links and information about installing Java on your computer. Cytobank requires that your Web browser be configured to run java applets.
14. http://www.javatester.org/version.html This site can test whether your browser can run Java applets.