Enrichment and analysis of anode-respiring bacteria from diverse anaerobic inocula

Environmental Science and Technology

Volumn 46, Issue 18, 2012, Pages 10349-10355

  Miceli, Joseph F ^a   Parameswaran, Prathap ^a   Kang, Dae Wook ^a   Krajmalnik Brown, Rosa ^a,b   Torres, César I ^a,b  

^a ARIZONA STATE UNIVERSITY   (United States)

^b Arizona State University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AG/AGCL; ANODE-RESPIRING BACTERIA; DIVERSE LOCATIONS; ELECTRON DONORS; ENVIRONMENTAL CONDITIONS; ENVIRONMENTAL SAMPLE; FUTURE APPLICATIONS; GEOBACTER; HIGH CURRENT DENSITIES; HIGH CURRENTS; INOCULA; LAKE SEDIMENTS; METABOLIC CAPACITIES; MICROBIAL ECOLOGY; MICROBIAL MATS; PYROSEQUENCING;

BACTERIA; BIOFILMS; ECOLOGY; SEDIMENTS;

CURRENT DENSITY;

ACETIC ACID; SILVER CHLORIDE;

ANOXIC CONDITIONS; BACTERIUM; BIOFILM; ELECTRODE; ELECTROKINESIS; ELECTRON; LACUSTRINE DEPOSIT; MICROBIAL COMMUNITY; MICROBIAL ECOLOGY; MICROBIAL MAT; SUBSTRATE;

ANAEROBIC BACTERIUM; ANODE RESPIRING BACTERIA; ARTICLE; BACTERIAL CELL; BACTERIUM DETECTION; BIOFILM; CONTROLLED STUDY; ELECTRODE; ELECTRON; GEOBACTER; GEOGRAPHIC DISTRIBUTION; INOCULATION; LAKE SEDIMENT; MARSH; MICROBIAL COMMUNITY; MICROBIAL ELECTROCHEMICAL CEL; MICROBIAL MAT; NONHUMAN; PYROSEQUENCING; SOIL ANALYSIS;

BIOELECTRIC ENERGY SOURCES; BIOFILMS; ELECTRICITY; ELECTRODES; ELECTRONS; GEOBACTER;

GEOBACTER;

EID: 84866363542     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es301902h     Document Type: Article

References (45)

1. Logan, B. E.; Hamelers, B.; Rozendal, R.; Schröder, U.; Keller, J.; Freguia, S.; Aelterman, P.; Verstraete, W.; Rabaey, K. Microbial fuel cells: Methodology and technology Environ. Sci. Technol. 2006, 40, 5181-5192
2. Erable, B.; Duţeanu, N. M.; Ghangrekar, M. M.; Dumas, C.; Scott, K. Application of electro-active biofilms Biofouling 2010, 26, 57-71
3. Torres, C. I.; Marcus, A. K.; Rittmann, B. E. Kinetics of consumption of fermentation products by anode-respiring bacteria Appl. Microbiol. Biotechnol. 2007, 77, 689-97
4. Parameswaran, P.; Torres, C. I.; Lee, H.-S.; Krajmalnik-Brown, R.; Rittmann, B. E. Syntrophic interactions among anode respiring bacteria (ARB) and non-ARB in a biofilm anode: electron balances Biotechnol. Bioeng. 2009, 103, 513-23
5. Lovley, D. R. Dissimilatory Metal Reduction Ann. Rev. Microbiol. 1993, 47, 263-290
6. Nealson, K. H.; Saffarini, D. Iron and Manganese in Anaerobic Respiration: Environmental Significance, Physiology, and Regulation Ann. Rev. Microbiol. 1994, 48, 311-43
7. Weber, K.; Achenbach, L.; Coates, J. D. Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction Nat. Rev. Microbiol. 2006, 4, 752-64
8. Chae, K.-J.; Choi, M.-J.; Lee, J.-W.; Kim, K.-Y.; Kim, I. S. Effect of different substrates on the performance, bacterial diversity, and bacterial viability in microbial fuel cells Bioresour. Technol. 2009, 100, 3518-25
9. Holmes, D. E.; Bond, D. R.; ONeil, R.; Reimers, C. E.; Tender, L. M.; Lovley, D. R. Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments Microb. Ecol. 2004, 48, 178-90
10. Bond, D. R.; Holmes, D. E.; Tender, L. M.; Lovley, D. R. Electrode-reducing microorganisms that harvest energy from marine sediments Science 2002, 295, 483-5
11. Tender, L. M.; Reimers, C. E.; Stecher, H.; Holmes, D. E.; Bond, D. R.; Lowy, D.; Pilobello, K.; Fertig, S. J.; Lovley, D. R. Harnessing microbially generated power on the seafloor Nat. Biotechnol. 2002, 20, 821-5
12. Logan, B. E.; Murano, C.; Scott, K.; Gray, N. D.; Head, I. M. Electricity generation from cysteine in a microbial fuel cell Water Res. 2005, 39, 942-52
13. Rabaey, K.; Boon, N.; Siciliano, S. D.; Verhaege, M.; Verstraete, W. Biofuel Cells Select for Microbial Consortia That Self-Mediate Electron Transfer Appl. Environ. Microbiol. 2004, 70, 5373-5382
14. Kan, J.; Hsu, L.; Cheung, A. C. M.; Pirbazari, M.; Nealson, K. H. Current production by bacterial communities in microbial fuel cells enriched from wastewater sludge with different electron donors Environ. Sci. Technol. 2011, 45, 1139-46
15. Borole, A. P.; Hamilton, C. Y.; Vishnivetskaya, T. A.; Leak, D.; Andras, C. Improving power production in acetate-fed microbial fuel cells via enrichment of exoelectrogenic organisms in flow-through systems Biochem. Eng. J. 2009, 48, 71-80
16. Harnisch, F.; Koch, C.; Patil, S. A.; Hübschmann, T.; Müller, S.; Schröder, U. Revealing the electrochemically driven selection in natural community derived microbial biofilms using flow-cytometry Energy Environ. Sci. 2011, 4, 1265
17. Jung, S.; Regan, J. M. Comparison of anode bacterial communities and performance in microbial fuel cells with different electron donors Appl. Microbiol. Biotechnol. 2007, 77, 393-402
18. Kim, B. H.; Park, H. S.; Kim, H. J.; Kim, G. T.; Chang, I.-s.; Lee, J.; Phung, N. T. Enrichment of microbial community generating electricity using a fuel-cell-type electrochemical cell Appl. Microbiol. Biotechnol. 2004, 63, 672-81
19. Lee, J.; Phung, N. T.; Chang, I.-s.; Kim, B. H.; Sung, H. C. Use of acetate for enrichment of electrochemically active microorganisms and their 16S rDNA analyses FEMS Microbiol. Lett. 2003, 223, 185-191
20. Lefebvre, O.; Nguyen, T. T. H.; Al-Mamun, A.; Chang, I.-s.; Ng, H. Y. T-RFLP reveals high β-Proteobacteria diversity in microbial fuel cells enriched with domestic wastewater J. Appl. Microbiol. 2010, 109, 839-50
21. Salvin, P.; Roos, C.; Robert, F. Tropical mangrove sediments as a natural inoculum for efficient electroactive biofilms Bioresour. Technol. 2012, 120, 45-51
22. Liu, J. L.; Lowy, D. a; Baumann, R. G.; Tender, L. M. Influence of anode pretreatment on its microbial colonization J. Appl. Microbiol. 2007, 102, 177-83
23. Boon, N.; Pham, T. H.; Aelterman, P.; Clauwaert, P.; De Schamphelaire, L.; Van Oostveldt, P.; Verbeken, K.; Rabaey, K.; Verstraete, W. High Shear Enrichment Improves the Performance of the Anodophilic Microbial Consortium in a Microbial Fuel Cell Microb. Biotechnol. 2008, 1, 487-496
24. Wang, A.; Sun, D.; Ren, N.; Liu, C.; Liu, W.; Logan, B. E.; Wu, W.-M. A rapid selection strategy for an anodophilic consortium for microbial fuel cells Bioresour. Technol. 2010, 101, 5733-5
25. Liu, Y.; Harnisch, F.; Fricke, K.; Sietmann, R.; Schröder, U. Improvement of the anodic bioelectrocatalytic activity of mixed culture biofilms by a simple consecutive electrochemical selection procedure Biosens. Bioelectron. 2008, 24, 1012-7
26. Torres, C. I.; Krajmalnik-Brown, R.; Parameswaran, P.; Marcus, A. K.; Wanger, G.; Gorby, Y. A.; Rittmann, B. E. Selecting anode-respiring bacteria based on anode potential: Phylogenetic, electrochemical, and microscopic characterization Environ. Sci. Technol. 2009, 43, 9519-24
27. Finkelstein, D. A.; Tender, L. M.; Zeikus, J. G. Effect of electrode potential on electrode-reducing microbiota Environ. Sci. Technol. 2006, 40, 6990-5
28. Parameswaran, P.; Zhang, H.; Torres, C. I.; Rittmann, B. E.; Krajmalnik-Brown, R. Microbial community structure in a biofilm anode fed with a fermentable substrate: The significance of hydrogen scavengers Biotechnol. Bioeng. 2010, 105, 69-78
29. Parameswaran, P.; Torres, C. I.; Lee, H.-S.; Rittmann, B. E.; Krajmalnik-Brown, R. Hydrogen consumption in microbial electrochemical systems (MXCs): The role of homo-acetogenic bacteria Bioresour. Technol. 2011, 102, 263-71
30. Torres, C. I.; Marcus, A. K.; Rittmann, B. E. Proton transport inside the biofilm limits electrical current generation by anode-respiring bacteria Biotechnol. Bioeng. 2008, 100, 872-81
31. Torres, C. I.; Marcus, A. K.; Parameswaran, P.; Rittmann, B. E. Kinetic experiments for evaluating the Nernst-Monod model for anode-respiring bacteria (ARB) in a biofilm anode Environ. Sci. Technol. 2008, 42, 6593-7
32. Garcia-Peña, E. I.; Parameswaran, P.; Kang, D. W.; Canul-Chan, M.; Krajmalnik-Brown, R. Anaerobic digestion and co-digestion processes of vegetable and fruit residues: process and microbial ecology Bioresour. Technol. 2011, 102, 9447-55
33. Schloss, P. D.; Westcott, S. L.; Ryabin, T.; Hall, J. R.; Hartmann, M.; Hollister, E. B.; Lesniewski, R. A.; Oakley, B. B.; Parks, D. H.; Robinson, C. J.; Sahl, J. W.; Stres, B.; Thallinger, G. G.; Van Horn, D. J.; Weber, C. F. Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities Appl. Environ. Microbiol. 2009, 75, 7537-41
34. Cole, J. R.; Wang, Q.; Cardenas, E.; Fish, J.; Chai, B.; Farris, R. J.; Kulam-Syed-Mohideen, A. S.; McGarrell, D. M.; Marsh, T.; Garrity, G. M.; Tiedje, J. M. The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis Nucleic Acids Res. 2009, 37, D141-5
35. Marcus, A. K.; Torres, C. I.; Rittmann, B. E. Analysis of a microbial electrochemical cell using the proton condition in biofilm (PCBIOFILM) model Bioresour. Technol. 2011, 102, 253-62
36. Torres, C. I.; Marcus, A. K.; Lee, H.-S.; Parameswaran, P.; Krajmalnik-Brown, R.; Rittmann, B. E. A kinetic perspective on extracellular electron transfer by anode-respiring bacteria FEMS Microbiol. Rev. 2010, 34, 3-17
37. Zavarzina, D. G.; Kolganova, T. V.; Boulygina, E. S.; Kostrikina, N. A.; Tourova, T. P.; Zavarzin, G. A. Geoalkalibacter ferrihydriticus gen. nov. sp. nov., the first alkaliphilic representative of the family Geobacteraceae, isolated from a soda lake Microbiology 2006, 75, 673-682
38. Greene, A. C.; Patel, B. K. C.; Yacob, S. Geoalkalibacter subterraneus sp. nov., an anaerobic Fe(III)- and Mn(IV)-reducing bacterium from a petroleum reservoir, and emended descriptions of the family Desulfuromonadaceae and the genus Geoalkalibacter Int. J. Syst. Evol. Microbiol. 2009, 59, 781-5
39. Denger, K.; Stackebrandt, E.; Cook, A. M. Desulfonispora thiosulfatigenes gen. nov., sp. nov., a taurine-fermenting, thiosulfate-producing anaerobic bacterium Int. J. Syst. Bacteriol. 1999, 49, 1599-1603
40. Ravot, G.; Magot, M.; Fardeau, M.-l.; Patel, B. K. C.; Ollivierl, B. Fusibacter paucivorans gen. nov., sp. nov., an anaerobic, thiosulfate-reducing bacterium from an oil-producing well Int. J. Syst. Bacteriol. 1999, 1141-1147
41. Chen, S.; Dong, X. Proteiniphilum acetatigenes gen. nov., sp. nov., from a UASB reactor treating brewery wastewater Int. J. Syst. Evol. Microbiol. 2005, 55, 2257-61
42. Ishii, S.; Logan, B. E.; Sekiguchi, Y. Enhanced electrode-reducing rate during the enrichment process in an air-cathode microbial fuel cell Appl. Microbiol. Biotechnol. 2012, 94, 1087-1094
43. Klouche, N.; Fardeau, M.-L.; Lascourrèges, J.-F.; Cayol, J.-L.; Hacene, H.; Thomas, P.; Magot, M. Geosporobacter subterraneus gen. nov., sp. nov., a spore-forming bacterium isolated from a deep subsurface aquifer Int. J. Syst. Evol. Microbiol. 2007, 57, 1757-61
44. Zhu, L.; Chen, H.; Huang, L.; Cai, J.; Xu, Z. Electrochemical analysis of Clostridium propionicum and its acrylic acid production in microbial fuel cells Eng. Life Sci. 2011, 11, 238-244
45. Torres, C. I.; Lee, H.-S.; Rittmann, B. E. Carbonate species as OH- carriers for decreasing the pH gradient between cathode and anode in biological fuel cells Environ. Sci. Technol. 2008, 42, 8773-7