Draft genome sequence of Gluconobacter oxydans WSH-003, a strain that is extremely tolerant of saccharides and alditols

Journal of Bacteriology

Volumn 194, Issue 16, 2012, Pages 4455-4456

  Gao, Lili ^a   Zhou, Jingwen ^a   Liu, Jie ^b   Du, Guocheng ^a   Chen, Jian ^a  

^a JIANGNAN UNIVERSITY   (China)

^b Jiangsu Jiangshan Pharmaceutical Co Ltd   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ALDITOL; CARBOHYDRATE; SORBOSE;

BACTERIAL GENOME; DNA BASE COMPOSITION; GENE CLUSTER; GENE SEQUENCE; GLUCONOBACTER OXYDANS; MULTIPLEX POLYMERASE CHAIN REACTION; NOTE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ANTI-BACTERIAL AGENTS; CARBOHYDRATE METABOLISM; DNA, BACTERIAL; GENOME, BACTERIAL; GLUCONOBACTER OXYDANS; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA;

GLUCONOBACTER OXYDANS;

EID: 84866327196     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00837-12     Document Type: Note

References (12)

1. Besemer J, Borodovsky M. 2005. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33:451-454.
2. Boeckmann B, et al. 2003. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31:365-370.
3. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679.
4. Deppenmeier U, Hoffmeister M, Prust C. 2002. Biochemistry and bio-technological applications of Gluconobacter strains. Appl. Microbiol. Biotechnol. 60:233-242.
5. Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. 2004. The KEGG resource for deciphering the genome. Nucleic Acids Res. 32:277-280.
6. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
7. Li R, et al. 2010. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20:265-272.
8. Margulies M, et al. 2005. Genome sequencing in microfabricated highdensity picolitre reactors. Nature 437:376-380.
9. Prust C, et al. 2005. Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. Nat. Biotechnol. 23:195-200.
10. Rutherford K, et al. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945.
11. Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:686-689.
12. Tatusov RL, et al. 2001. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29:22-28.