Gene expression profiles of vitrified in vitro- and in vivo-derived bovine blastocysts

Molecular Reproduction and Development

Volumn 79, Issue 9, 2012, Pages 613-625

  Aksu, Digdem Aktoprakligil ^a   Agca, Cansu ^b   Aksu, Soner ^a   Bagis, Haydar ^a,c   Akkoc, Tolga ^a   Caputcu, Arzu Tas ^a   Arat, Sezen ^d   Taskin, Ali Cihan ^a   Kizil, Sedat H ^e   Karasahin, Tahir ^e   Akyol, Numan ^f   Satilmis, Muharrem ^e   Sagirkaya, Hakan ^g   Ustuner, Burcu ^g   Nur, Zekeriya ^g   Agca, Yuksel ^b  

^a MATERIALS INSTITUTE   (Turkey)

^b UNIVERSITY OF MISSOURI   (United States)

^c ADIYAMAN UNIVERSITY   (Turkey)

^d NAMIK KEMAL UNIVERSITY   (Turkey)

^e Agriculture and Livestock   (Turkey)

^f KIRIKKALE UNIVERSITY   (Turkey)

^g ULUDAG UNIVERSITY   (Turkey)

Author keywords

[No Author keywords available]

Indexed keywords

SPHINGOLIPID;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BLASTOCYST; CONTROLLED STUDY; COW; EMBRYO; FEMALE; FERTILIZATION IN VITRO; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORK; IN VITRO STUDY; IN VIVO STUDY; MEIOSIS; MICROARRAY ANALYSIS; NONHUMAN; OOCYTE; OXIDATIVE PHOSPHORYLATION; PRIORITY JOURNAL; PURINE METABOLISM; RIBOSOME; SPLICEOSOME; STATISTICAL SIGNIFICANCE; STRESS; UPREGULATION; VITRIFICATION;

ANIMALS; BLASTOCYST; CATTLE; EMBRYO CULTURE TECHNIQUES; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; STRESS, PHYSIOLOGICAL; UP-REGULATION;

BOVINAE;

EID: 84866317684     PISSN: 1040452X     EISSN: 10982795     Source Type: Journal    
DOI: 10.1002/mrd.22068     Document Type: Article

References (43)

1. Agca Y, Monson RL, Northey DL, Mazni OA, Schaefer DM, Rutledge JJ. 1998. Transfer of fresh and cryopreserved IVP bovine embryos: Normal calving, birth weight and gestation lengths. Theriogenology 50: 147-162.
2. Akkoc T, Taskin AC, Caputcu Tas A, Arat S, Bagis H. 2011. The effect of solid surface vitrification (SSV) versus classic vitrification technique on survive rate of in vitro produced bovine blastocysts. J Anim Vet Adv 10: 2885-2891.
3. Arat S, Caputcu AT, Akkoc T, Pabuccuoglu S, Sagirkaya H, Cirit U, Nak Y, Koban E, Bagis H, Demir K, Nak D, Senunver A, Kilicaslan AR, Tuna B, Cetinkaya G, Denizci M, Aslan O. 2011. Using cell banks as a tool in conservation programmes of native domestic breeds: The production of the first cloned Anatolian Grey cattle Reprod Fertil Dev 23: 1012-1023.
4. Baumann CG, Morris DG, Sreenan JM, Leese HJ. 2007. The quiet embryo hypothesis: Molecular characteristics favoring viability. Mol Reprod Dev 74: 1345-1353.
5. Boonkusol D, Gal AB, Bodo S, Gorhony B, Kitiyanant Y, Dinnyes A. 2006. Gene expression profiles and in vitro development following vitrification of pronuclear and 8-cell stage mouse embryos. Mol Reprod Dev 73: 700-708.
6. Brackett BG, Zuelkea KA. 1993. Analysis of factors involved in the in vitro production of bovine embryos. Theriogenology 39: 43-64.
7. Clemente M, Lopez-Vidriero I, O'Gaora P, Mehta JP, Forde N, Gutierrez-Adan A, Lonergan P, Rizos D. 2011. Transcriptome changes at the initiation of elongation in the bovine conceptus. Biol Reprod 85: 285-295.
8. Corcoran D, Fair T, Park S, Rizos D, Patel OV, Smith GW, Coussens PM, Ireland JJ, Boland MP, Evans AC, Lonergan P. 2006. Suppressed expression of genes involved in transcription and translation in in vitro compared with in vivo cultured bovine embryos. Reproduction 131: 651-660.
9. Cooke S, Quinn P, Kime L, Ayres C, Tyler JP, Driscoll GL. 2002. Improvement in early human embryo development using new formulation sequential stage-specific culture media. Fertil Steril 78: 1254-1260.
10. Dennis G, Jr., Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA. 2003. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 4: P3.
11. Dobrinsky JR. 2002. Advancements in cryopreservation of domestic animal embryos. Theriogenology 57: 285-302.
12. Dobson AT, Raja R, Abeyta MJ, Taylor T, Shen S, Haqq C, Pera RA. 2004. The unique transcriptome through day 3 of human preimplantation development. Hum Mol Genet 13: 1461-1470.
13. Giritharan G, Talbi S, Donjacour A, Di Sebastiano F, Dobson AT, Rinaudo PF. 2007. Effect of in vitro fertilization on gene expression and development of mouse preimplantation embryos. Reproduction 134: 63-72.
14. Hasler JF, Henderson WB, Hurtgen PJ, Lin ZQ, McCauley AD, Mower SA, Neeley B, Shuey LS, Stokes JE, Trimmer SA. 1995. Production, freezing and transfer of bovine IVF embryos and subsequent calving results. Theriogenology 43: 141-152.
15. Huang DW, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nat Protoc 4: 44-57.
16. Kanagawa H, Shimohira I, Saitoh N. 1995. Manual of bovine embryo transfer. Japan: Livestock Technology Association Press.
17. Lazzari G, Wrenzycki C, Herrmann D, Duchi R, Kruip T, Niemann H, Galli C. 2002. Cellular and molecular deviations in bovine in vitro produced embryos are related to the large offspring syndrome. Biol Reprod 67: 767-775.
18. Leese HJ. 2002. Quiet please, do not disturb: A hypothesis of embryo metabolism and viability. Bioessays 24: 845-849.
19. Leese HJ, Sturmey RG, Baumann CG, McEvoy TG. 2007. Embryo viability and metabolism: Obeying the quiet rules. Hum Reprod 22: 3047-3050.
20. Leibo SP, Loskutoff NM. 1993. Cryobiology of in vitro-derived bovine embryos. Theriogenology 39: 81-94.
21. Lonergan P, Rizos D, Gutierrez-Adan A, Fair T, Boland MP. 2003a. Oocyte and embryo quality: Effect of origin, culture conditions and gene expression patterns. Reprod Domest Anim 38: 259-267.
22. Lonergan P, Rizos D, Gutierrez-Adan A, Moreira PM, Pintado B, de la Fuente J. 2003b. Temporal divergence in the pattern of messenger RNA expression in bovine embryos cultured from the zygote to blastocyst stage in vitro or in vivo. Biol Reprod 69: 1424-1431.
23. Mamo S, Bodo S, Kobolak J, Polgar Z, Tolgyesi G, Dinnyes A. 2006. Gene expression profiles of vitrified in vivo derived 8-cell stage mouse embryos detected by high density oligonucleotide microarrays. Mol Reprod Dev 73: 1380-1392.
24. Massip A, Mermillod P, Dynnes A. 1995. Morphology and biochemistry of in vitro-produced bovine embryos: Implications for their cryopreservation. Human Reprod 10: 3004-3011.
25. Manjunatha BM, Ravindra JP, Gupta PSP, Devaraj M, Honnappa TG, Krishnaswamy A. 2009. Post-thaw development of in vitro produced buffalo embryos cryopreserved by cytoskeletal stabilization and vitrification J Vet Sci 10: 153-156.
26. Men H, Agca Y, Mullen SF, Critser ES, Critser JK. 2005. Osmotic tolerance of in vitro produced porcine blastocysts assessed by their morphological integrity and cellular actin filament organization. Cryobiology 51: 119-129.
27. Misirlioglu M, Page GP, Sagirkaya H, Kaya A, Parrish JJ, First NL, Memili E. 2006. Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos. Proc Natl Acad Sci USA 103: 18905-18910.
28. Moore K, Bonilla AQ. 2006. Cryopreservation of Mammalian Embryos: The State of the Art. ARBS Annu Rev Biomed Sci 8: 19-32.
29. Pfaffl MW, Horgan GW, Dempfle L. 2002. Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res 30: 9, e36.
30. Pollard JW, Leibo SP. 1994. Chilling sensitivity of mammalian embryos. Theriogenology 41: 101-106.
31. Rall WF, Fahy GM. 1985. Ice-free cryopreservation of mouse embryos at -196 degrees C by vitrification. Nature 313: 573-575.
32. Rinaudo PF, Giritharan G, Talbi S, Dobson AT, Schultz RM. 2006. Effects of oxygen tension on gene expression in preimplantation mouse embryos. Fertil Steril 86: 1252-1265.
33. Rizos D, Clemente M, Bermejo-Alvarez P, de La Fuente J, Lonergan P, Gutierrez-Adan A. 2008. Consequences of in vitro culture conditions on embryo development and quality. Reprod Domest Anim 43: 44-50.
34. Rizos D, Lonergan P, Boland MP, Arroyo-Garcia R, Pintado B, de la Fuente J, Gutierrez-Adan A. 2002. Analysis of differential Messenger RNA expression between bovine blastocysts produced in different culture systems: Implications for blastocyst quality. Biol Reprod 66: 589-595.
35. Rozen S, Skaletsky HJ. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, editors. Bioinformatics methods and protocols: Methods in molecular biology. New Jersey: Humana Press. pp 365-386.
36. Sirard MA, Dufort I, Vallee M, Massicotte L, Gravel C, Reghenas H, Watson AJ, King WA, Robert C. 2005. Potential and limitations of bovine specific arrays for the analysis of mRNA levels in early development: Preliminary analysis using a bovine embryonic array. Reprod Fertil Dev 17: 47-57.
37. Tesfaye D, Ponsuksili S, Wimmers K, Gilles M, Schellander K. 2004. A comparative expression analysis of gene transcripts in post-fertilization developmental stages of bovine embryos produced in vitro or in vivo. Reprod Domest Anim 39: 396-404.
38. Thompson JG, Partridge RJ, Houghton FD, Cox CI, Leese HJ. 1996. Oxygen uptake and carbohydrate metabolism by in vitro derived bovine embryos. J Reprod Fertil 106: 299-306.
39. Whitworth KM, Agca C, Kim JG, Patel RV, Springer GK, Bivens NJ, Forrester LJ, Mathialagan N, Green JA, Prather RS. 2005. Transcriptional profiling of pig embryogenesis by using a 15-K member unigene set specific for pig reproductive tissues and embryos. Biol Reprod 72: 1437-1451.
40. Wrenzycki C, Herrmann D, Lucas-Hahn A, Lemme E, Korsawe K, Niemann H. 2004. Gene expression patterns in in vitro-produced and somatic nuclear transfer-derived preimplantation bovine embryos: Relationship to the large offspring syndrome? Anim Reprod Sci 82-83: 593-603.
41. Wrenzycki C, Herrmann D, Lucas-Hahn A, Korsawe K, Lemme E, Niemann H. 2005. Messenger RNA expression patterns in bovine embryos derived from in vitro procedures and their implications for development. Reprod Fertil Dev 17: 23-35.
42. Wrenzycki C, Herrmann D, Niemann H. 2007. Messenger RNA in oocytes and embryos in relation to embryo viability. Theriogenology 68: S77-S83.
43. Zhang Y, Lu H. 2009. Signaling to p53: Ribosomal proteins find their way. Cancer Cell 16: 369-377.