Genetic linkage map construction and QTL mapping of cadmium accumulation in radish (Raphanus sativus L.)

Theoretical and Applied Genetics

Volumn 125, Issue 4, 2012, Pages 659-670

  Xu, Liang ^a   Wang, Liangju ^a   Gong, Yiqin ^a   Dai, Wenhao ^b   Wang, Yan ^a   Zhu, Xianwen ^b   Wen, Tiancai ^a   Liu, Liwang ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b NORTH DAKOTA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CADMIUM; CHEMICAL CONTAMINATION; HEALTH RISKS; MAPPING;

BREEDING PROGRAM; CD CONCENTRATIONS; MAPPING POPULATIONS; MARKER-ASSISTED SELECTION; MOLECULAR MECHANISM; PHENOTYPIC VARIANCE; PHENOTYPIC VARIATIONS; QUANTITATIVE TRAIT LOCUS;

PLANTS (BOTANY);

RAPHANUS SATIVUS;

EID: 84866309510     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-012-1858-y     Document Type: Article

References (50)

1. Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M (2005) Cytokinin oxidase regulates rice grain production. Science 309: 741-745.
2. Bassam BJ, Anollés GC, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196: 80-83.
3. Besson-Bard A, Gravot A, Richaud P, Auroy P, Duc C, Gaymard F, Taconnat L, Renou JP, Pugin A, Wendehenne D (2009) Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron uptake. Plant Physiol 149: 1302-1315.
4. Bett KE, Lydiate DJ (2003) Genetic analysis and genome mapping in Raphanus. Genome 46: 423-430.
5. Budahn H, Peterka H, Mousa MA, Ding Y, Zhang S, Li J (2009) Molecular mapping in oil radish (Raphanus sativus L.) and QTL analysis of resistance against beet cyst nematode (Heterodera schachtii). Theor Appl Genet 118: 775-782.
6. Choi SR, Teakle GR, Plaha P, Kim JH, Allender CJ, Beynon E, Piao ZY, Soengas P, Han TH, King GJ, Baker GC, Hand P, Lydiate DJ, Batley J, Edwards D, Koo DH, Bang JW, Park B-S, Lim YP (2007) The reference genetic linkage map for the multinational Brassica rapa genome sequencing project. Theor Appl Genet 115: 777-792.
7. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
8. Clarke JM, Leisle D, Kopytko GL (1997) Inheritance of cadmium concentration in five durum wheat crosses. Crop Sci 37: 1722-1725.
9. Courbot M, Willems G, Motte P, Arvidsson S, Roosens N, Saumitou-Laprade P, Verbruggen N (2007) A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4, a gene encoding a heavy metal ATPase. Plant Physiol 144: 1052-1065.
10. Deckert J (2005) Cadmium toxicity in plants: is there any analogy to its carcinogenic effect in mammalian cells? Biometals 18: 475-481.
11. Deniau AX, Pieper B, Ten Bookum WM, Lindhout P, Aarts MGM, Schat H (2006) QTL analysis of cadmium and zinc accumulation in the heavy metal hyperaccumulator Thlaspi caerulescens. Theor Appl Genet 113: 907-920.
12. Fourmann M, Charlot F, Froger N, Delourme R, Brunel D (2001) Expression, mapping, and genetic variability of Brassica napus disease resistance gene analogues. Genome 44: 1083-1099.
13. Gao MQ, Li GY, Yang B, Qiu D, Farnham M, Quiros CF (2007) High-density Brassica oleracea linkage map: identification of useful new linkages. Theor Appl Genet 115: 277-287.
14. Grant CA, Buckley WT, Bailey LD, Selles F (1998) Cadmium accumulation in crops. Can J Plant Sci 78: 1-17.
15. Grant CA, Clarke JM, Duguid S, Chaney RL (2008) Selection and breeding of plant cultivars to minimize cadmium accumulation. Sci Total Environ 390: 301-310.
16. Ishikawa S, Ae N, Yano M (2005) Chromosomal regions with quantitative trait loci controlling cadmium concentration in brown rice (Oryza sativa). New Phytol 168: 345-350.
17. Ishikawa S, Abe T, Kuramata M, Yamaguchi M, Ando T, Yamamoto T, Yano M (2010) A major quantitative trait locus for increasing cadmium-specific concentration in rice grain is located on the short arm of chromosome 7. J Exp Bot 61: 923-934.
18. Jegadeesan S, Yu KF, Poysa V, Gawalko E, Morrison MJ, Shi C, Cober E (2010) Mapping and validation of simple sequence repeat markers linked to a major gene controlling seed cadmium accumulation in soybean [Glycine max (L.) Merr]. Theor Appl Genet 121: 283-294.
19. Kamei A, Tsuro M, Kubo N, Hayashi T, Wang N, Fujimura T, Hirai M (2010) QTL mapping of clubroot resistance in radish (Raphanus sativus L.). Theor Appl Genet 120: 1021-1027.
20. Kashiwagi T, Shindoh K, Hirotsu N, Ishimaru K (2009) Evidence for separate pathways in determining cadmium accumulation in grain and aerial plant parts in rice. BMC Plant Biol 9: 8. doi: 10. 1186/1471-2229-9-8.
21. Knox RE, Pozniak CJ, Clarke FR, Clarke JM, Houshmand S, Singh AK (2009) Chromosomal location of the cadmium uptake gene (Cdu1) in durum wheat. Genome 52: 741-747.
22. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12: 172-175.
23. Li GY, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103: 455-461.
24. Li F, Hasegawa Y, Saito M, Shirasawa S, Fukushima A, Ito T, Fujii H, Kishitani S, Kitashiba H, Nishio T (2011) Extensive chromosome homoeology among Brassiceae species were revealed by comparative genetic mapping with high-density EST-based SNP markers in radish (Raphanus sativus L.). DNA Res 18: 401-411.
25. Liu L, Guo W, Zhu X, Zhang T (2003) Inheritance and fine mapping of fertility-restoration for cytoplasmic male sterility in Gossypium hirsutum L. Theor Appl Genet 106: 461-469.
26. Liu L, Zhu X, Gong Y, Song X, Wang Y, Zhao L, Wang L (2007) Genetic diversity analysis of radish germplasm with RAPD, AFLP and SRAP markers. Acta Hortic 760: 125-130.
27. Liu L, Yang J, Hou X, Gong Y, Zhu X, Wang F, Zhang C, Chu R (2008) Genotypic differences of Cd uptake and distribution in radish (Raphanus sativus L.). Bioinformatics and Biomedical Engineering (ICBBE) 4696-4699. doi: 10. 1109/ICBBE. 2008. 332.
28. McGrath SP, Zhao FJ, Lombi E (2001) Plant and rhizosphere processes involved in phytoremediation of metal-contaminated soils. Plant Soil 232: 207-214.
29. 2+ transporters OsIRT1 and OsIRT2 in rice. Soil Sci Plant Nutr 52: 464-469.
30. Saal B, Struss D (2005) RGA- and RAPD-derived SCAR markers for a Brassica B-genome introgression conferring resistance to blackleg in oilseed rape. Theor Appl Genet 111: 281-290.
31. Shirasawa K, Oyama M, Hirakawa H, Sato S, Tabata S, Fujioka T, Kimizuka-Takagi C, Sasamoto S, Watanabe A, Kato M, Kishida Y, Kohara M, Takahashi C, Tsuruoka H, Wada T, Sakai T, Isobe S (2011) An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae. DNA Res 18: 221-232.
32. Smooker AM, Wells R, Morgan C, Beaudoin F, Cho K, Fraser F, Bancroft I (2011) The identification and mapping of candidate genes and QTL involved in the fatty acid desaturation pathway in Brassica napus. Theor Appl Genet 122: 1075-1090.
33. Suwabe K, Iketani H, Nunome T, Kage T, Hirai M (2002) Isolation and characterization of microsatellites in Brassica rapa L. Theor Appl Genet 104: 1092-1098.
34. Suwabe K, Tsukazaki H, Iketani H, Hatakeyama K, Kondo M, Fujimura M, Nunome T, Fukuoka H, Hirai M, Matsumoto S (2006) Simple sequence repeat-based comparative genomics between Brassica rapa and Arabidopsis thaliana: the genetic origin of clubroot resistance. Genet 173: 309-319.
35. Takahashi R, Ishimaru Y, Senoura T, Shimo H, Ishikawa S, Arao T, Nakanishi H, Nishizawa NK (2011) The OsNRAMP1 iron transporter is involved in Cd accumulation in rice. J Exp Bot 62: 4843-4850.
36. Tanhuanpää P, Kalendar R, Schulman AH, Kiviharju E (2007) A major gene for grain cadmium accumulation in oat (Avena sativa L.). Genome 50: 588-594.
37. Tezuka K, Miyadate H, Katou K, Kodama I, Matsumoto S, Kawamoto T, Masaki S, Satoh H, Yamagucji M, Sakurai K, Takahashi H, Satoh-Nagasawa N, Watanabe A, Fujimura T, Akagi H (2010) A single recessive gene controls cadmium translocation in the cadmium hyperaccumulating rice cultivar Cho-Ko-Kohu. Theor Appl Genet 120: 1175-1182.
38. Tsuro M, Suwabe K, Kubo N, Matsumoto S, Hirai M (2005) Construction of a linkage map of radish (Raphanus sativus L.), based on AFLP and Brassica-SSR markers. Breed Sci 55: 107-111.
39. Tsuro M, Suwabe K, Kubo N, Matsumoto S, Hirai M (2008) Mapping of QTLs controlling for root shape and red pigmentation in radish, Raphanus sativus L. Breed Sci 58: 55-61.
40. Ueno D, Kono I, Yokosho K, Ando T, Yano M, Ma JF (2009) A major quantitative trait locus controlling cadmium translocation in rice (Oryza sativa). New Phytol 182: 644-653.
41. van Ooijen JW, Voorrips RE (2001) JoinMap Version 3. 0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen.
42. Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTL. J Hered 93: 77-78.
43. Wang L, He Q (2005) China radish. Scientific and Technical Documents Publishing House, Beijing.
44. Wang N, Hu J, Ohsawa R, Ohta M, Fujimura T (2007a) Identification and characterization of microsatellite markers derived from expressed sequence tags (ESTs) of radish (Raphanus sativus L.). Mol Ecol Notes 7: 503-506.
45. Wang S, Basten CJ, Zeng ZB (2007b) Windows QTL cartographer 2. 5. Department of Statistics, North Carolina State University, Raleigh, NC.
46. Wiebe K, Harris NS, Faris JD, Clarke JM, Knox RE, Taylor GJ, Pozniak CJ (2010) Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum). Theor Appl Genet 121: 1047-1058.
47. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6531-6535.
48. Xue D, Chen M, Zhang G (2009) Mapping of QTLs associated with cadmium tolerance and accumulation during seedling stage in rice (Oryza sativa L.). Euphytica 165: 587-596.
49. Yamamoto T, Yonemaru J, Yano M (2009) Towards the understanding of complex traits in rice: Substantially or superficially? DNA Res 16: 141-154.
50. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.