Three new genera representing novel lineages of sordariomycetidae (Sordariomycetes, Ascomycota) from tropical freshwater habitats in Costa Rica

Mycologia

Volumn 104, Issue 4, 2012, Pages 865-879

  Ferrer, Astrid ^a   Miller, Andrew N ^b   Sarmiento, Carolina ^c   Shearer, Carol A ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSITY OF ILLINOIS   (United States)

^c UNIVERSIDAD DE LOS ANDES   (Colombia)

Author keywords

Aquatic; Ascomycetes; Fungal systematics; LSU; Phylogenetics; SSU

Indexed keywords

FRESHWATER ENVIRONMENT; FUNGUS; HABITAT STRUCTURE; MOLECULAR ANALYSIS; MORPHOLOGY; NEW GENUS; NEW SPECIES; PHYLOGENETICS; PHYLOGENY; SPORE; TAXONOMY; TROPICAL ENVIRONMENT; WOODY DEBRIS;

COSTA RICA;

ASCOMYCOTA; OPHIOSTOMATALES; SORDARIOMYCETES; SORDARIOMYCETIDAE;

FRESH WATER; FUNGAL DNA;

ADAPTATION; ARTICLE; ASCOMYCETES; CELL WALL; CHEMISTRY; CLASSIFICATION; COLOR; COSTA RICA; CYTOLOGY; ECOSYSTEM; FUNGUS SPORE; GENETICS; MICROBIOLOGY; PHYLOGENY; PHYSIOLOGY; SPECIES DIFFERENCE; TIME;

ADAPTATION, PHYSIOLOGICAL; ASCOMYCOTA; CELL WALL; COLOR; COSTA RICA; DNA, FUNGAL; ECOSYSTEM; FRESH WATER; PHYLOGENY; SPECIES SPECIFICITY; SPORES, FUNGAL; TIME FACTORS; WATER MICROBIOLOGY;

EID: 84866245661     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/11-111     Document Type: Article

References (28)

1. Edgar R. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797, doi:10.1093/nar/gkh340
2. Ferrer A, Shearer CA. 2005. New records and a new species of Canalisporium from aquatic habitats in Panama. Mycotaxon 93:179-188.
3. Ferrer A. 2007. Three new species of Luttrellia from temperate and tropical freshwater habitats. Mycologia 99:144-151, doi:10.3852/mycologia.99.1.144
4. Galtier N, Gouy M, Gautier C. 1996. SeaView and Phylo_win: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548.
5. Gouy M, Guindon S, Gascuel O. 2010. SeaView 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27:221-224, doi:10.1093/molbev/msp259
6. Huelsenbeck JP, Mark PVD, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees.3.1.2. http:mrbayes.csit.fsu.edu/download.php [Accessed Jan 2009].
7. Huelsenbeck JP, Ronquist FR. 2001. MrBayes: Bayesian inference of phylogenetic trees. Biometrics 17:754-755.
8. Inderbitzin P, Landvik S, Abdel-Wahab A, Berbee ML. 2001. Aliquandostipitaceae, a new family for two new tropical ascomycetes with unusually wide hyphae and dimorphic ascomata. Am J Bot 88:52-61, doi:10.2307/ 2657126
9. Jones EBG. 1994. Ultrastructure and taxonomy of the aquatic ascomycetous order Halosphaeriales. Can J Bot 73(Suppl. 1):S790-S801.
10. Jones EBG. 2006. Form and function of fungal spore appendages. Mycoscience 47:167-183, doi:10.1007/s10267-006-0295-7
11. Jones EBG, Sakayaroj J, Suetrong S, Somrithipol S, Pang KL. 2009. Classification of marine Ascomycota, anamorphic and Basidiomycota. Fungal Divers 35:1-187.
12. Nakagiri A, Tokura R. 1987. Taxonomic studies of the genus Corollospora (Halosphaeriales, Ascomycotina) with descriptions of seven new species. Trans Mycol Soc Japan 28:413-436.
13. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 49:817-818, doi:10.1093/bioinformatics/14.9.817
14. Promputtha I, Miller AN. 2010. Three new species of Acanthostigma (Tubeufiaceae, Pleosporales) from the Great Smoky Mountains National Park. Mycologia 102: 574-587, doi:10.3852/09-051
15. Raja HA, Shearer CA. 2006. Jahnula species from North and Central America, including three new species. Mycologia 98:312-332, doi:10.3852/mycologia.98.2.319
16. Rehner SA, Samuels GJ. 1994. Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunitribosomal DNA sequences. Mycol Res 98:625-634, doi:10.1016/S0953-7562(09)80409-7
17. Réblová M. 2006. Molecular systematics of Ceratostomella sensu lato and morphologically similar fungi. Mycologia 98:68-93, doi:10.3852/mycologia.98.1.68
18. Réblová M. 2009. Teleomorph of Rhodoveronae (Sordariomycetidae) discovered and re-evaluation of Pleurophragmium. Fungal Divers 36:129-139.
19. Shearer CA. 1978. Fungi of the Chesapeake bay and its tributaries VII. Luttrellia estuarina gen. et sp. nov. (Ascomycetes) Mycologia 70:692-697.
20. Shearer CA. 1993. The freshwater ascomycetes. Nova Hedwig 56: 1-33.
21. Spatafora JW, Volkmann-Kohlmeyer B, Kohlmeyer J. 1998. Independent terrestrial origins of the Halosphaeriales (Marine Ascomycota). Am J Bot 85:1569-1580, doi:10.2307/2446483
22. Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-260, doi:10. 1093/bioinformatics/btl446
23. Swofford DL. 2002. PAUP*4: phylogenetic analysis using parsimony (*and other methods). Sunderland, Massachusetts: Sinauer Associates.
24. Vijaykrishna D, Jeewon R, Hyde KD. 2006. Molecular taxonomy, origins and evolution of freshwater ascomycetes. Fungal Divers 23:367-406.
25. Vilgalys R, Hester M. 1990. Rapid identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238-4246.
26. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JS, White TJ, eds. PCR protocol: a guide to methods and applications. San Diego: Academic Press. p 315-322.
27. Wiens JJ. 1998. Combining datasets with different phylogenetic histories. Syst Biol 57:568-581, doi:10.1080/ 106351598260581
28. Zhang N, Castlebury LA, Miller AN, Huhndorf S, Schoch CL, Seifert KA, Rossman AY, Rogers JD, Kohlmeyer J, Volkmann-Kohlmeyer B, Sung G-H. 2006. An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98:1076-1087, doi:10.3852/mycologia.98.6.1076