-
1
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
1464427, 16056220
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Ho CH, Irzyk GP, Jando SC IML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380. 1464427, 16056220.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Ho, C.H.19
Irzyk, G.P.20
Jando, S.C.I.M.L.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
more..
-
2
-
-
50149095793
-
The Genome Sequencer FLX System-longer reads, more applications, straight forward bioinformatics and more complete data sets
-
10.1016/j.jbiotec.2008.03.021, 18616967
-
Droege M, Hill B. The Genome Sequencer FLX System-longer reads, more applications, straight forward bioinformatics and more complete data sets. J Biotechnol 2008, 136:3-10. 10.1016/j.jbiotec.2008.03.021, 18616967.
-
(2008)
J Biotechnol
, vol.136
, pp. 3-10
-
-
Droege, M.1
Hill, B.2
-
3
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
10.1016/0022-2836(70)90057-4, 5420325
-
Needleman SB, Wunsch CD. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 1970, 48:443-453. 10.1016/0022-2836(70)90057-4, 5420325.
-
(1970)
J Mol Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
4
-
-
0019887799
-
Identification of common molecular subsequences
-
10.1016/0022-2836(81)90087-5, 7265238
-
Smith TF, Waterman MS. Identification of common molecular subsequences. J Mol Biol 1981, 147:195-197. 10.1016/0022-2836(81)90087-5, 7265238.
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
5
-
-
0020484488
-
An improved algorithm for matching biological sequences
-
10.1016/0022-2836(82)90398-9, 7166760
-
Gotoh O. An improved algorithm for matching biological sequences. J Mol Biol 1982, 162:705-708. 10.1016/0022-2836(82)90398-9, 7166760.
-
(1982)
J Mol Biol
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
6
-
-
0021919480
-
Rapid and sensitive protein similarity searches
-
10.1126/science.2983426, 2983426
-
Lipman DJ, Pearson WR. Rapid and sensitive protein similarity searches. Science 1985, 227:1435-1441. 10.1126/science.2983426, 2983426.
-
(1985)
Science
, vol.227
, pp. 1435-1441
-
-
Lipman, D.J.1
Pearson, W.R.2
-
7
-
-
0023989064
-
Improved tools for biological sequence comparison
-
10.1073/pnas.85.8.2444, 280013, 3162770
-
Pearson WR, Lipman DJ. Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 1988, 85:2444-2448. 10.1073/pnas.85.8.2444, 280013, 3162770.
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
8
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
9
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
10
-
-
0034053725
-
A greedy algorithm for aligning DNA sequences
-
10.1089/10665270050081478, 10890397
-
Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. J Comput Biol 2000, 7:203-214. 10.1089/10665270050081478, 10890397.
-
(2000)
J Comput Biol
, vol.7
, pp. 203-214
-
-
Zhang, Z.1
Schwartz, S.2
Wagner, L.3
Miller, W.4
-
11
-
-
0034764307
-
SSAHA: a fast search method for large DNA databases
-
10.1101/gr.194201, 311141, 11591649
-
Ning Z, Cox AJ, Mullikin JC. SSAHA: a fast search method for large DNA databases. Genome Res 2001, 11:1725-1729. 10.1101/gr.194201, 311141, 11591649.
-
(2001)
Genome Res
, vol.11
, pp. 1725-1729
-
-
Ning, Z.1
Cox, A.J.2
Mullikin, J.C.3
-
12
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
187518, 11932250
-
Kent WJ. BLAT-the BLAST-like alignment tool. Genome Res 2002, 12:656-664. 187518, 11932250.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
13
-
-
33846697176
-
Striped Smith-Waterman speeds database searches six times over other SIMD implementations
-
10.1093/bioinformatics/btl582, 17110365
-
Farrar M. Striped Smith-Waterman speeds database searches six times over other SIMD implementations. Bioinformatics 2007, 23:156-161. 10.1093/bioinformatics/btl582, 17110365.
-
(2007)
Bioinformatics
, vol.23
, pp. 156-161
-
-
Farrar, M.1
-
15
-
-
67650924274
-
PanGEA: identification of allele specific gene expression using the 454 technology
-
10.1186/1471-2105-10-143, 2693439, 19442283
-
Kofler R, Torres TT, Lelley T, Schlötterer C. PanGEA: identification of allele specific gene expression using the 454 technology. BMC Bioinformatics 2009, 10:143. 10.1186/1471-2105-10-143, 2693439, 19442283.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 143
-
-
Kofler, R.1
Torres, T.T.2
Lelley, T.3
Schlötterer, C.4
-
16
-
-
79960557370
-
FAAST: Flow-space Assisted Alignment Search Tool
-
10.1186/1471-2105-12-293, 3228549, 21771335
-
Lysholm F, Andersson B, Persson B. FAAST: Flow-space Assisted Alignment Search Tool. BMC Bioinformatics 2011, 12:293. 10.1186/1471-2105-12-293, 3228549, 21771335.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 293
-
-
Lysholm, F.1
Andersson, B.2
Persson, B.3
-
17
-
-
33947607974
-
Viral metagenomics
-
10.1002/rmv.532, 17295196
-
Delwart EL. Viral metagenomics. Rev Med Virol 2007, 17:115-131. 10.1002/rmv.532, 17295196.
-
(2007)
Rev Med Virol
, vol.17
, pp. 115-131
-
-
Delwart, E.L.1
-
18
-
-
78650635638
-
An unbiased metagenomic search for infectious agents using monozygotic twins discordant for chronic fatigue
-
10.1186/1471-2180-11-2, 3022642, 21194495
-
Sullivan PF, Allander T, Lysholm F, Goh S, Persson B, Jacks A, Evengård B, Pedersen NL, Andersson B. An unbiased metagenomic search for infectious agents using monozygotic twins discordant for chronic fatigue. BMC Microbiol 2011, 11:2. 10.1186/1471-2180-11-2, 3022642, 21194495.
-
(2011)
BMC Microbiol
, vol.11
, pp. 2
-
-
Sullivan, P.F.1
Allander, T.2
Lysholm, F.3
Goh, S.4
Persson, B.5
Jacks, A.6
Evengård, B.7
Pedersen, N.L.8
Andersson, B.9
-
19
-
-
84856567743
-
Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate
-
Tamaki H, Zhang R, Angly FE, Nakamura S, Hong PY, Yasunaga T, Kamagata Y, Liu WT. Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate. Rev Environ Microbiol 2012, 14:441-452.
-
(2012)
Rev Environ Microbiol
, vol.14
, pp. 441-452
-
-
Tamaki, H.1
Zhang, R.2
Angly, F.E.3
Nakamura, S.4
Hong, P.Y.5
Yasunaga, T.6
Kamagata, Y.7
Liu, W.T.8
-
20
-
-
0026063030
-
Molecular sequence accuracy and the analysis of protein coding regions
-
10.1073/pnas.88.13.5518, 51908, 2062834
-
States DJ, Botstein D. Molecular sequence accuracy and the analysis of protein coding regions. Proc Natl Acad Sci U S A 1991, 88:5518-5522. 10.1073/pnas.88.13.5518, 51908, 2062834.
-
(1991)
Proc Natl Acad Sci U S A
, vol.88
, pp. 5518-5522
-
-
States, D.J.1
Botstein, D.2
-
21
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
10.1038/nature10242, 21776081
-
Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, Hoon J, Simons JF, Marran D, Myers JW, Davidson JF, Branting A, Nobile JR, Puc BP, Light D, Clark TA, Huber M, Branciforte JT, Stoner IB, Cawley SE, Lyons M, Fu Y, Homer N, Sedova M, Miao X, Reed B, Sabina J, et al. An integrated semiconductor device enabling non-optical genome sequencing. Nature 2011, 475:348-352. 10.1038/nature10242, 21776081.
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
Schultz, J.4
Mileski, W.5
Davey, M.6
Leamon, J.H.7
Johnson, K.8
Milgrew, M.J.9
Edwards, M.10
Hoon, J.11
Simons, J.F.12
Marran, D.13
Myers, J.W.14
Davidson, J.F.15
Branting, A.16
Nobile, J.R.17
Puc, B.P.18
Light, D.19
Clark, T.A.20
Huber, M.21
Branciforte, J.T.22
Stoner, I.B.23
Cawley, S.E.24
Lyons, M.25
Fu, Y.26
Homer, N.27
Sedova, M.28
Miao, X.29
Reed, B.30
Sabina, J.31
more..
-
22
-
-
0036166599
-
Heterogeneity of TT virus related sequences isolated from human tumour biopsy specimens
-
Villiers EM, Schmidt R, Delius H, Hausen H. Heterogeneity of TT virus related sequences isolated from human tumour biopsy specimens. J Mol Med (Berl) 2002, 80:44-50.
-
(2002)
J Mol Med (Berl)
, vol.80
, pp. 44-50
-
-
Villiers, E.M.1
Schmidt, R.2
Delius, H.3
Hausen, H.4
-
23
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
10.1073/pnas.89.22.10915, 50453, 1438297
-
Henikoff S, Henikoff JG. Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci U S A 1992, 89:10915-10919. 10.1073/pnas.89.22.10915, 50453, 1438297.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
24
-
-
81255207159
-
An efficient simulator of 454 data using configurable statistical models
-
10.1186/1756-0500-4-449, 3214204, 22029428
-
Lysholm F, Andersson B, Persson B. An efficient simulator of 454 data using configurable statistical models. BMC Res Notes 2011, 4:449. 10.1186/1756-0500-4-449, 3214204, 22029428.
-
(2011)
BMC Res Notes
, vol.4
, pp. 449
-
-
Lysholm, F.1
Andersson, B.2
Persson, B.3
-
25
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
10.1016/0005-2795(75)90109-9, 1180967
-
Matthews BW. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 1975, 405:442-451. 10.1016/0005-2795(75)90109-9, 1180967.
-
(1975)
Biochim Biophys Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
|