Colletotrichum carthami comb. nov., an anthracnose pathogen of safflower, garland chrysanthemum and pot marigold, revived by molecular phylogeny with authentic herbarium specimens

Journal of General Plant Pathology

Volumn 78, Issue 5, 2012, Pages 316-330

  Uematsu, Seiji ^a   Kageyama, Koji ^b   Moriwaki, Jouji ^c   Sato, Toyozo ^d  

^a Chiba Prefectural Agriculture and Forestry Research Center 1762   (Japan)

^b GIFU UNIVERSITY   (Japan)

^c Toyama Agricultural Research Center   (Japan)

^d NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Tubulin 2 gene; Calendula officinalis; Carthamus tinctorius; Chrysanthemum coronarium var. spatiosum; Epitype; Gloeosporium chrysanthemi

Indexed keywords

CALENDULA OFFICINALIS; CARTHAMUS TINCTORIUS; CHRYSANTHEMUM; CHRYSANTHEMUM CORONARIUM; CHRYSANTHEMUM CORONARIUM CORONARIUM; COLLETOTRICHUM; COLLETOTRICHUM CARTHAMI; GLOEOSPORIUM;

EID: 84866014575     PISSN: 13452630     EISSN: 1610739X     Source Type: Journal    
DOI: 10.1007/s10327-012-0397-3     Document Type: Article

References (41)

1. Cullen DW, Lees AK, Toth IK, Duncan JM (2002) Detection of Colletotrichum coccodes from soil and potato tubers by conventional and quantitative real-time PCR. Plant Pathol 51: 281-292.
2. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
3. Fukui T (1916) Some fungi on the useful plants in Japan (in Japanese). J Scient Agric Soc Tokyo 166: 381-383.
4. Fujinaga M, Yamagishi N, Ogiso H, Takeuchi J, Moriwaki J, Sato T (2011) First report of celery stunt anthracnose caused by Colletotrichum simmondsii in Japan. J Gen Plant Pathol 77: 243-247.
5. Glass NL, Donaldson GC (1995) Development of primer sets designed for use with the PCR to amplify conserved genes form filamentous ascomycetes. Appl Environ Microbiol 61: 1323-1330.
6. Guerber JC, Correll JC (2001) Characterization of Glomerella acutata, the teleomorph of Colletotrichum acutatum. Mycologia 93: 216-229.
7. Guerber JC, Liu B, Correll JC, Johnston PR (2003) Characterization of diversity in Colletotrichum acutatumsensu lato by sequence analysis of two gene introns, mtDNA and intron RFLPs, and mating compatibility. Mycologia 95: 872-895.
8. Hemmi T (1919) Vorläufige mitteilung ueber eine anthraknose von Carthamus tinctorius (in German). Ann Phytopathol Soc Jpn 1: 1-11.
9. Hotta M, Ogata K, Nitta A, Hoshikawa K, Yanagi M, Yamazaki K (eds) (1989) Useful plants of the world (in Japanese). Heibonsha Co, Tokyo, pp 191-192, 221-222, 259-260.
10. Johnston PR, Jones D (1997) Relationships among Colletotrichum isolates from fruit-rots assessed using rDNA sequences. Mycologia 89: 420-430.
11. Kanagawa T (2003) Bias and artifacts in multitemplate polymerase chain reactions (PCR). J Biosci Bioeng 96: 317-323.
12. Kim WG, Moon YG, Cho WD, Park SD (1999) Anthracnose of safflower caused by Colletotrichum acutatum. Plant Pathol J 15: 62-67.
13. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
14. Kwon JH, Kang SW, Kim HK, Park CS (1998) Safflower (Carthamus tinctorius L.) anthracnose caused by Colletotrichum acutatum in Korea (in Korean). Korean J Plant Pathol 14: 651-653.
15. Lardner R, Johnston PR, Plummer KM, Pearson MN (1999) Morphological and molecular analysis of Colletotrichum acutatum sensu lato. Mycol Res 103: 275-285.
16. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2. 0. Bioinformatics 23: 2947-2948.
17. Li M, Asano T, Suga H, Kageyama K (2011) A multiplex PCR for the detection of Phytophthora nicotianae and P. cactorum, and a survey of their occurrence in strawberry production areas of Japan. Plant Dis 95: 1270-1278.
18. Li W, Song S, Brlansky RH, Hartung JS (2007) Genetic diversity of citrus bacterial canker pathogens preserved in herbarium specimens. Proc Natl Acad Sci USA 104: 18427-18432.
19. Nakata K, Takimoto S (1928) Anthracnose of crown daisy, Glebionis coronaria (L.) Cass. ex Spach. In: descriptive catalogue of the Korean fungi (in Japanese). Ann Agric Expt Stat 15: 87 (Gov Chosen).
20. Numata I, Enjoji S, Urabe Y, Shoji H (1958) Anthracnose of Calendula officinalis (new disease) (abstract in Japanese). Ann Phytopathol Soc Jpn 23: 21.
21. O'Donnell K, Cigelnik E (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol Phylogenet Evol 7: 103-116.
22. O'Gorman DT, Sholberg PL, Stokes SC, Ginns J (2008) DNA sequence analysis of herbarium specimens facilitates the revival of Botrytis mali, a postharvest pathogen of apple. Mycologia 100: 227-235.
23. Ristaino JB, Groves CT, Parra GR (2001) PCR amplification of the Irish potato famine pathogen from historic specimens. Nature 411: 695-697.
24. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
25. Sato T, Ueda S, Iijima A, Tezuka N (1996) Re-identification of pathogens of anemone and prune anthracnose. Ann Phytopathol Soc Jpn 62: 170-174.
26. Sato T, Uematsu S, Mizoguchi H, Kiku T, Miura T (1997) Anthracnose of prairie gentian and loquat caused by Colletotrichum acutatum. Ann Phytopathol Soc Jpn 63: 16-20.
27. Sawada K (1943) Descriptive catalogue of the Formosan fungi Part VIII-119. Anthracnose fungus of crown daisy, Glebionis coronaria (in Japanese). Rep Govt Res Inst Dep Agric, Formosa 85: 81-82.
28. Shivas RG, Tan YP (2009) A taxonomic re-assessment of Colletotrichum acutatum, introducing C. fioriniae comb. et stat. nov. and C. simmondsii sp. nov. Fungal Divers 39: 111-122.
29. Sreenivasaprasad S, Talhinhas P (2005) Genotypic and phenotypic diversity in Colletotrichum acutatum, a cosmopolitan pathogen causing anthracnose on a wide range of hosts. Mol Plant Pathol 6: 361-378.
30. Swofford DL (2002) PAUP*: Phylogenetic analysis using parsimony (*and other methods) ver. 4. 0 beta 10. Sinauer, Sunderland.
31. Takimoto S (1924) Anthracnose of crown daisy, Glebionis coronaria (in Japanese). Nihon-engei-zasshi 36(9): 27-28.
32. Tanaka T (1917) New Japanese fungi, notes and translations-I. Mycologia 9: 167-172.
33. Talhinhas P, Sreenivasaprasad S, Neves-Martins J, Oliveira H (2002) Genetic and morphological characterization of Colletotrichum acutatum causing anthracnose of lupins. Phytopathology 92: 986-996.
34. Talhinhas P, Sreenivasaprasad S, Neves-Martins J, Oliveira H (2005) Molecular and phenotypic analyses reveal association of diverse Colletotrichum acutatum groups and a low level of C. gloeosporioides with olive anthracnose. Appl Environ Microbiol 71: 2987-2998.
35. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 25: 4876-4882.
36. Ueda I, Kajiwara T (1968) Anthracnose of asteraceous plants (abstract in Japanese). Ann Phytopathol Soc Jpn 34: 371.
37. Uematsu S, Kato SM, Moriwaki J, Sato T, Ebihara Y (2004) Anthracnose of Calendula officinalis, Chrysanthemum coronarium var. spatiosum and Carthamus tinctorius caused by Colletotrichum acutatum (abstract in Japanese). Ann Phytopathol Soc Jpn 70: 47.
38. Víchová J, Vejražka K, Cholastová T, Pokorný R, Hrudová E (2011) Colletotrichum simmondsii causing anthracnose on safflower in the Czech Republic. Plant Dis 95: 79.
39. Vinnere O, Fatehi J, Wright SAI, Gerhardson B (2002) The causal agent of anthracnose of Rhododendron in Sweden and Latvia. Mycol Res 106: 60-69.
40. von Arx JA (1957) Die arten der gattung Colletotrichum Cda (in German). Phytopathol Z 29: 413-468.
41. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: A guide to methods and applications. Academic Press, San Diego, pp 315-322.