-
1
-
-
84930483147
-
Multinational cholera outbreak after wedding in the Dominican Republic
-
3310595, 22204039
-
Jiménez ML, Apostolou A, Suarez AJP, Meyer L, Hiciano S, Newton A, Morgan O, Then C, Pimentel R. Multinational cholera outbreak after wedding in the Dominican Republic. Emerging Infect Dis 2011, 17:2172-2174. 3310595, 22204039.
-
(2011)
Emerging Infect Dis
, vol.17
, pp. 2172-2174
-
-
Jiménez, M.L.1
Apostolou, A.2
Suarez, A.J.P.3
Meyer, L.4
Hiciano, S.5
Newton, A.6
Morgan, O.7
Then, C.8
Pimentel, R.9
-
2
-
-
84856116963
-
Elimination of cholera transmission in Haiti and the Dominican Republic
-
10.1016/S0140-6736(12)60031-2, 22240408
-
Periago MR, Frieden TR, Tappero JW, De Cock KM, Aasen B, Andrus JK. Elimination of cholera transmission in Haiti and the Dominican Republic. Lancet 2012, 379:e12-e13. 10.1016/S0140-6736(12)60031-2, 22240408.
-
(2012)
Lancet
, vol.379
-
-
Periago, M.R.1
Frieden, T.R.2
Tappero, J.W.3
De Cock, K.M.4
Aasen, B.5
Andrus, J.K.6
-
3
-
-
78650623432
-
Update on Cholera - Haiti, Dominican Republic, and Florida, 2010
-
CDC
-
CDC Update on Cholera - Haiti, Dominican Republic, and Florida, 2010. Morbidity Mortality Weekly Report (MMWR) 2010, 59:1637-1641. CDC.
-
(2010)
Morbidity Mortality Weekly Report (MMWR)
, vol.59
, pp. 1637-1641
-
-
-
4
-
-
84930483964
-
Cholera in Haiti and other Caribbean regions, 19th century
-
3310590, 22099117
-
Jenson D, Szabo V. Cholera in Haiti and other Caribbean regions, 19th century. Emerging Infect Dis 2011, 17:2130-2135. 3310590, 22099117.
-
(2011)
Emerging Infect Dis
, vol.17
, pp. 2130-2135
-
-
Jenson, D.1
Szabo, V.2
-
5
-
-
79953713967
-
Recent Clonal Origin of Cholera in Haiti
-
Ali A. Recent Clonal Origin of Cholera in Haiti. Emerging Infectious Diseases 2011,
-
(2011)
Emerging Infectious Diseases
-
-
Ali, A.1
-
6
-
-
84930480293
-
Characterization of toxigenic Vibrio cholerae from Haiti, 2010-2011
-
3310580, 22099116
-
Talkington D, Bopp C, Tarr C, Parsons MB, Dahourou G, Freeman M, Joyce K, Turnsek M, Garrett N, Humphrys M, Gomez G, Stroika S, Boncy J, Ochieng B, Oundo J, Klena J, Smith A, Keddy K, Gerner-Smidt P. Characterization of toxigenic Vibrio cholerae from Haiti, 2010-2011. Emerging Infect Dis 2011, 17:2122-2129. 3310580, 22099116.
-
(2011)
Emerging Infect Dis
, vol.17
, pp. 2122-2129
-
-
Talkington, D.1
Bopp, C.2
Tarr, C.3
Parsons, M.B.4
Dahourou, G.5
Freeman, M.6
Joyce, K.7
Turnsek, M.8
Garrett, N.9
Humphrys, M.10
Gomez, G.11
Stroika, S.12
Boncy, J.13
Ochieng, B.14
Oundo, J.15
Klena, J.16
Smith, A.17
Keddy, K.18
Gerner-Smidt, P.19
-
8
-
-
78650854393
-
The Origin of the Haitian Cholera Outbreak Strain
-
10.1056/NEJMoa1012928, 3030187, 21142692
-
Chin C-S, Sorenson J, Harris JB, Robins WP, Charles RC, Jean-Charles RR, Bullard J, Webster DR, Kasarskis A, Peluso P, Paxinos EE, Yamaichi Y, Calderwood SB, Mekalanos JJ, Schadt EE, Waldor MK. The Origin of the Haitian Cholera Outbreak Strain. N Engl J Med 2011, 364:33-42. 10.1056/NEJMoa1012928, 3030187, 21142692.
-
(2011)
N Engl J Med
, vol.364
, pp. 33-42
-
-
Chin, C.-S.1
Sorenson, J.2
Harris, J.B.3
Robins, W.P.4
Charles, R.C.5
Jean-Charles, R.R.6
Bullard, J.7
Webster, D.R.8
Kasarskis, A.9
Peluso, P.10
Paxinos, E.E.11
Yamaichi, Y.12
Calderwood, S.B.13
Mekalanos, J.J.14
Schadt, E.E.15
Waldor, M.K.16
-
9
-
-
84930485738
-
Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa
-
3310578, 22099115
-
Reimer AR, Van Domselaar G, Stroika S, Walker M, Kent H, Tarr C, Talkington D, Rowe L, Olsen-Rasmussen M, Frace M, Sammons S, Dahourou GA, Boncy J, Smith AM, Mabon P, Petkau A, Graham M, Gilmour MW, Gerner-Smidt P. Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa. Emerging Infect Dis 2011, 17:2113-2121. 3310578, 22099115.
-
(2011)
Emerging Infect Dis
, vol.17
, pp. 2113-2121
-
-
Reimer, A.R.1
Van Domselaar, G.2
Stroika, S.3
Walker, M.4
Kent, H.5
Tarr, C.6
Talkington, D.7
Rowe, L.8
Olsen-Rasmussen, M.9
Frace, M.10
Sammons, S.11
Dahourou, G.A.12
Boncy, J.13
Smith, A.M.14
Mabon, P.15
Petkau, A.16
Graham, M.17
Gilmour, M.W.18
Gerner-Smidt, P.19
-
10
-
-
80052597651
-
Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak
-
Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM. Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. MBio 2011, 2:e00157-111.
-
(2011)
MBio
, vol.2
-
-
Hendriksen, R.S.1
Price, L.B.2
Schupp, J.M.3
Gillece, J.D.4
Kaas, R.S.5
Engelthaler, D.M.6
Bortolaia, V.7
Pearson, T.8
Waters, A.E.9
Upadhyay, B.P.10
Shrestha, S.D.11
Adhikari, S.12
Shakya, G.13
Keim, P.S.14
Aarestrup, F.M.15
-
11
-
-
84863888444
-
PNAS Plus: Genomic diversity of 2010 Haitian cholera outbreak strains
-
10.1073/pnas.1207359109, 22711841
-
Hasan NA, Choi SY, Eppinger M, Clark PW, Chen A, Alam M, Haley BJ, Taviani E, Hine E, Su Q, Tallon LJ, Prosper JB, Furth K, Hoq MM, Li H, Fraser-Liggett CM, Cravioto A, Huq A, Ravel J, Cebula TA, Colwell RR. PNAS Plus: Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci 2012, 109:E2010-E2017. 10.1073/pnas.1207359109, 22711841.
-
(2012)
Proc Natl Acad Sci
, vol.109
-
-
Hasan, N.A.1
Choi, S.Y.2
Eppinger, M.3
Clark, P.W.4
Chen, A.5
Alam, M.6
Haley, B.J.7
Taviani, E.8
Hine, E.9
Su, Q.10
Tallon, L.J.11
Prosper, J.B.12
Furth, K.13
Hoq, M.M.14
Li, H.15
Fraser-Liggett, C.M.16
Cravioto, A.17
Huq, A.18
Ravel, J.19
Cebula, T.A.20
Colwell, R.R.21
more..
-
12
-
-
17144462135
-
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
-
10.1038/35020000, 10952301
-
Heidelberg JF, Eisen JA, Nelson WC, Clayton RA, Gwinn ML, Dodson RJ, Haft DH, Hickey EK, Peterson JD, Umayam L, Gill SR, Nelson KE, Read TD, Tettelin H, Richardson D, Ermolaeva MD, Vamathevan J, Bass S, Qin H, Dragoi I, Sellers P, McDonald L, Utterback T, Fleishmann RD, Nierman WC, White O, Salzberg SL, Smith HO, Colwell RR, Mekalanos JJ, Venter JC, Fraser CM. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 2000, 406:477-483. 10.1038/35020000, 10952301.
-
(2000)
Nature
, vol.406
, pp. 477-483
-
-
Heidelberg, J.F.1
Eisen, J.A.2
Nelson, W.C.3
Clayton, R.A.4
Gwinn, M.L.5
Dodson, R.J.6
Haft, D.H.7
Hickey, E.K.8
Peterson, J.D.9
Umayam, L.10
Gill, S.R.11
Nelson, K.E.12
Read, T.D.13
Tettelin, H.14
Richardson, D.15
Ermolaeva, M.D.16
Vamathevan, J.17
Bass, S.18
Qin, H.19
Dragoi, I.20
Sellers, P.21
McDonald, L.22
Utterback, T.23
Fleishmann, R.D.24
Nierman, W.C.25
White, O.26
Salzberg, S.L.27
Smith, H.O.28
Colwell, R.R.29
Mekalanos, J.J.30
Venter, J.C.31
Fraser, C.M.32
more..
-
13
-
-
58149250207
-
A Recalibrated Molecular Clock and Independent Origins for the Cholera Pandemic Clones
-
10.1371/journal.pone.0004053, 2605724, 19115014
-
Feng L, Reeves PR, Lan R, Ren Y, Gao C, Zhou Z, Ren Y, Cheng J, Wang W, Wang J, Qian W, Li D, Wang L. A Recalibrated Molecular Clock and Independent Origins for the Cholera Pandemic Clones. PLoS One 2008, 3:e4053. 10.1371/journal.pone.0004053, 2605724, 19115014.
-
(2008)
PLoS One
, vol.3
-
-
Feng, L.1
Reeves, P.R.2
Lan, R.3
Ren, Y.4
Gao, C.5
Zhou, Z.6
Ren, Y.7
Cheng, J.8
Wang, W.9
Wang, J.10
Qian, W.11
Li, D.12
Wang, L.13
-
14
-
-
0036855374
-
Characterization of a novel Vibrio pathogenicity island (VPI-2) encoding neuraminidase (nanH) among toxigenic Vibrio cholerae isolates
-
Jermyn WS, Boyd EF. Characterization of a novel Vibrio pathogenicity island (VPI-2) encoding neuraminidase (nanH) among toxigenic Vibrio cholerae isolates. Microbiology 2002, 148:3681-3693.
-
(2002)
Microbiology
, vol.148
, pp. 3681-3693
-
-
Jermyn, W.S.1
Boyd, E.F.2
-
15
-
-
70349304423
-
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
-
10.1073/pnas.0907787106, 2741270, 19720995
-
Chun J, Grim CJ, Hasan NA, Lee JH, Choi SY, Haley BJ, Taviani E, Jeon Y-S, Kim DW, Lee J-H, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Munk AC, Chertkov O, Meincke L, Saunders E, Walters RA, Huq A, Nair GB, Colwell RR. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proc Natl Acad Sci 2009, 106:15442-15447. 10.1073/pnas.0907787106, 2741270, 19720995.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 15442-15447
-
-
Chun, J.1
Grim, C.J.2
Hasan, N.A.3
Lee, J.H.4
Choi, S.Y.5
Haley, B.J.6
Taviani, E.7
Jeon, Y.-S.8
Kim, D.W.9
Lee, J.-H.10
Brettin, T.S.11
Bruce, D.C.12
Challacombe, J.F.13
Detter, J.C.14
Han, C.S.15
Munk, A.C.16
Chertkov, O.17
Meincke, L.18
Saunders, E.19
Walters, R.A.20
Huq, A.21
Nair, G.B.22
Colwell, R.R.23
more..
-
16
-
-
0027944329
-
Genetic characterization of mannose-sensitive hemagglutinin (MSHA)-negative mutants of Vibrio cholerae derived by Tn5 mutagenesis
-
10.1016/0378-1119(94)90852-4, 7959047
-
Häse CC, Bauer ME, Finkelstein RA. Genetic characterization of mannose-sensitive hemagglutinin (MSHA)-negative mutants of Vibrio cholerae derived by Tn5 mutagenesis. Gene 1994, 150:17-25. 10.1016/0378-1119(94)90852-4, 7959047.
-
(1994)
Gene
, vol.150
, pp. 17-25
-
-
Häse, C.C.1
Bauer, M.E.2
Finkelstein, R.A.3
-
17
-
-
1642535426
-
The CTXphi repressor RstR binds DNA cooperatively to form tetrameric repressor-operator complexes
-
Kimsey HH, Waldor MK. The CTXphi repressor RstR binds DNA cooperatively to form tetrameric repressor-operator complexes. J Biol Chem 2004, 279:2640-2647.
-
(2004)
J Biol Chem
, vol.279
, pp. 2640-2647
-
-
Kimsey, H.H.1
Waldor, M.K.2
-
18
-
-
80053133499
-
Evidence for several waves of global transmission in the seventh cholera pandemic
-
10.1038/nature10392, 21866102
-
Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, Kariuki S, Croucher NJ, Choi SY, Harris SR, Lebens M, Niyogi SK, Kim EJ, Ramamurthy T, Chun J, Wood JLN, Clemens JD, Czerkinsky C, Nair GB, Holmgren J, Parkhill J, Dougan G. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 2011, 477:462-465. 10.1038/nature10392, 21866102.
-
(2011)
Nature
, vol.477
, pp. 462-465
-
-
Mutreja, A.1
Kim, D.W.2
Thomson, N.R.3
Connor, T.R.4
Lee, J.H.5
Kariuki, S.6
Croucher, N.J.7
Choi, S.Y.8
Harris, S.R.9
Lebens, M.10
Niyogi, S.K.11
Kim, E.J.12
Ramamurthy, T.13
Chun, J.14
Wood, J.L.N.15
Clemens, J.D.16
Czerkinsky, C.17
Nair, G.B.18
Holmgren, J.19
Parkhill, J.20
Dougan, G.21
more..
-
19
-
-
79959898835
-
Understanding the cholera epidemic, Haiti
-
10.3201/eid1707.110059, 3381400, 21762567
-
Piarroux R, Barrais R, Faucher B, Haus R, Piarroux M, Gaudart J, Magloire R, Raoult D. Understanding the cholera epidemic, Haiti. Emerging Infect Dis 2011, 17:1161-1168. 10.3201/eid1707.110059, 3381400, 21762567.
-
(2011)
Emerging Infect Dis
, vol.17
, pp. 1161-1168
-
-
Piarroux, R.1
Barrais, R.2
Faucher, B.3
Haus, R.4
Piarroux, M.5
Gaudart, J.6
Magloire, R.7
Raoult, D.8
-
20
-
-
0030797026
-
Regulation, replication, and integration functions of the Vibrio cholerae CTXphi are encoded by region RS2
-
10.1046/j.1365-2958.1997.3911758.x, 9220000
-
Waldor MK, Rubin EJ, Pearson GD, Kimsey H, Mekalanos JJ. Regulation, replication, and integration functions of the Vibrio cholerae CTXphi are encoded by region RS2. Mol Microbiol 1997, 24:917-926. 10.1046/j.1365-2958.1997.3911758.x, 9220000.
-
(1997)
Mol Microbiol
, vol.24
, pp. 917-926
-
-
Waldor, M.K.1
Rubin, E.J.2
Pearson, G.D.3
Kimsey, H.4
Mekalanos, J.J.5
-
21
-
-
79955765269
-
Proteomic analysis of the Vibrio cholerae type II secretome reveals new proteins, including three related serine proteases
-
10.1074/jbc.M110.211078, 3089498, 21385872
-
Sikora AE, Zielke RA, Lawrence DA, Andrews PC, Sandkvist M. Proteomic analysis of the Vibrio cholerae type II secretome reveals new proteins, including three related serine proteases. J Biol Chem 2011, 286:16555-16566. 10.1074/jbc.M110.211078, 3089498, 21385872.
-
(2011)
J Biol Chem
, vol.286
, pp. 16555-16566
-
-
Sikora, A.E.1
Zielke, R.A.2
Lawrence, D.A.3
Andrews, P.C.4
Sandkvist, M.5
-
22
-
-
79951486038
-
TagA is a secreted protease of Vibrio cholerae that specifically cleaves mucin glycoproteins
-
(Reading, Engl.), 10.1099/mic.0.044529-0, 3090133, 20966091
-
Szabady RL, Yanta JH, Halladin DK, Schofield MJ, Welch RA. TagA is a secreted protease of Vibrio cholerae that specifically cleaves mucin glycoproteins. Microbiology 2011, 157:516-525. (Reading, Engl.), 10.1099/mic.0.044529-0, 3090133, 20966091.
-
(2011)
Microbiology
, vol.157
, pp. 516-525
-
-
Szabady, R.L.1
Yanta, J.H.2
Halladin, D.K.3
Schofield, M.J.4
Welch, R.A.5
-
23
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
10.1101/gr.078212.108, 2577856, 18714091
-
Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18:1851-1858. 10.1101/gr.078212.108, 2577856, 18714091.
-
(2008)
Genome Res
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
24
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
10.1101/gr.074492.107, 2336801, 18349386
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18:821-829. 10.1101/gr.074492.107, 2336801, 18349386.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
25
-
-
33644876685
-
The UCSC Archaeal Genome Browser
-
10.1093/nar/gkj134, 1347496, 16381898
-
Schneider KL, Pollard KS, Baertsch R, Pohl A, Lowe TM. The UCSC Archaeal Genome Browser. Nucleic Acids Res 2006, 34:D407-D410. 10.1093/nar/gkj134, 1347496, 16381898.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Schneider, K.L.1
Pollard, K.S.2
Baertsch, R.3
Pohl, A.4
Lowe, T.M.5
-
26
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
10.1093/bioinformatics/btp324, 2705234, 19451168
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760. 10.1093/bioinformatics/btp324, 2705234, 19451168.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
27
-
-
77956295988
-
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
10.1101/gr.107524.110, 2928508, 20644199
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 2010, 20:1297-1303. 10.1101/gr.107524.110, 2928508, 20644199.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
Daly, M.10
DePristo, M.A.11
-
28
-
-
69949122158
-
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
-
10.1093/bioinformatics/btp373, 2734323, 19542151
-
Koboldt DC, Chen K, Wylie T, Larson DE, McLellan MD, Mardis ER, Weinstock GM, Wilson RK, Ding L. VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics 2009, 25:2283-2285. 10.1093/bioinformatics/btp373, 2734323, 19542151.
-
(2009)
Bioinformatics
, vol.25
, pp. 2283-2285
-
-
Koboldt, D.C.1
Chen, K.2
Wylie, T.3
Larson, D.E.4
McLellan, M.D.5
Mardis, E.R.6
Weinstock, G.M.7
Wilson, R.K.8
Ding, L.9
-
30
-
-
77954380824
-
Genome Sequence of Hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and Comparative Genomics with V. cholerae
-
10.1128/JB.00040-10, 2897672, 20348258
-
Grim CJ, Hasan NA, Taviani E, Haley B, Chun J, Brettin TS, Bruce DC, Detter JC, Han CS, Chertkov O, Challacombe J, Huq A, Nair GB, Colwell RR. Genome Sequence of Hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and Comparative Genomics with V. cholerae. J Bacteriol 2010, 192:3524-3533. 10.1128/JB.00040-10, 2897672, 20348258.
-
(2010)
J Bacteriol
, vol.192
, pp. 3524-3533
-
-
Grim, C.J.1
Hasan, N.A.2
Taviani, E.3
Haley, B.4
Chun, J.5
Brettin, T.S.6
Bruce, D.C.7
Detter, J.C.8
Han, C.S.9
Chertkov, O.10
Challacombe, J.11
Huq, A.12
Nair, G.B.13
Colwell, R.R.14
-
32
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
33
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
10.1093/bioinformatics/btl446, 16928733
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690. 10.1093/bioinformatics/btl446, 16928733.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
34
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
10.1101/gr.092759.109, 2752132, 19541911
-
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA. Circos: an information aesthetic for comparative genomics. Genome Res 2009, 19:1639-1645. 10.1101/gr.092759.109, 2752132, 19541911.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
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