-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0025294528
-
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
-
Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., and Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
3
-
-
0034781109
-
Phylogenetic relationships within the class Spirotrichea (Ciliophora) inferred from small subunit rRNA gene sequences
-
Bernhard, D., Stechmann, A., Foissner, W., Ammermann, D., Hehn, M., and Schlegel, M. (2001) Phylogenetic relationships within the class Spirotrichea (Ciliophora) inferred from small subunit rRNA gene sequences. Mol Phylogenet Evol 21: 86-92.
-
(2001)
Mol Phylogenet Evol
, vol.21
, pp. 86-92
-
-
Bernhard, D.1
Stechmann, A.2
Foissner, W.3
Ammermann, D.4
Hehn, M.5
Schlegel, M.6
-
4
-
-
67649985730
-
Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake
-
Buck, U., Grossart, H.P., Amann, R., and Pernthaler, J. (2009) Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake. Environ Microbiol 11: 1854-1865.
-
(2009)
Environ Microbiol
, vol.11
, pp. 1854-1865
-
-
Buck, U.1
Grossart, H.P.2
Amann, R.3
Pernthaler, J.4
-
5
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole, J.R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R.J., etal. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
-
6
-
-
79955509688
-
Description of a zoochlorella-bearing form of Euplotes, E.daidaleos n. sp. (Ciliophora, Hypotrichida)
-
Diller, W.F., and Kounaris, D. (1966) Description of a zoochlorella-bearing form of Euplotes, E.daidaleos n. sp. (Ciliophora, Hypotrichida). Biol Bull 131: 437-445.
-
(1966)
Biol Bull
, vol.131
, pp. 437-445
-
-
Diller, W.F.1
Kounaris, D.2
-
7
-
-
0025743732
-
'Touchdown' PCR to circumvent spurious priming during gene amplification
-
Don, R.H., Cox, P.T., Wainwright, B.J., Baker, K., and Mattick, J.S. (1991) 'Touchdown' PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res 19: 4008-4008.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 4008-4008
-
-
Don, R.H.1
Cox, P.T.2
Wainwright, B.J.3
Baker, K.4
Mattick, J.S.5
-
8
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (version 3.2)
-
Felsenstein, J. (1989) PHYLIP - Phylogeny Inference Package (version 3.2). Cladistics 5: 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
9
-
-
43049142668
-
Euplotespora binucleata n. gen., n. sp., (protozoa: Microsporidia), a parasite infecting the hypotrichous ciliate Euplotes woodruffi, with observations on microsporidian infections in ciliophora
-
Fokin, S.I., Di Giuseppe, G., Erra, F., and Dini, F. (2008) Euplotespora binucleata n. gen., n. sp., (protozoa: Microsporidia), a parasite infecting the hypotrichous ciliate Euplotes woodruffi, with observations on microsporidian infections in ciliophora. J Eukaryot Microbiol 55: 214-228.
-
(2008)
J Eukaryot Microbiol
, vol.55
, pp. 214-228
-
-
Fokin, S.I.1
Di Giuseppe, G.2
Erra, F.3
Dini, F.4
-
10
-
-
2142757655
-
Cirral patterns of cirrotype 9 Euplotes (Hypotrichida, Ciliophora)
-
Gates, M.A. (1978) Cirral patterns of cirrotype 9 Euplotes (Hypotrichida, Ciliophora). Protistologica 14: 125-132.
-
(1978)
Protistologica
, vol.14
, pp. 125-132
-
-
Gates, M.A.1
-
11
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S., and Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
12
-
-
23744486525
-
Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond
-
Hahn, M.W., Pöckl, M., and Wu, Q.L. (2005) Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond. Appl Environ Microbiol 71: 4539-4547.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4539-4547
-
-
Hahn, M.W.1
Pöckl, M.2
Wu, Q.L.3
-
13
-
-
70349329727
-
Emended description of the genus Polynucleobacter and the species P. necessarius and proposal of two subspecies, P. necessarius subspecies necessarius subsp. nov. and P. necessarius subspecies asymbioticus subsp. nov
-
Hahn, M.W., Lang, E., Brandt, U., Wu, Q.L., and Scheuerl, T. (2009) Emended description of the genus Polynucleobacter and the species P. necessarius and proposal of two subspecies, P. necessarius subspecies necessarius subsp. nov. and P. necessarius subspecies asymbioticus subsp. nov. Int J Syst Evol Microbiol 59: 2002-2009.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 2002-2009
-
-
Hahn, M.W.1
Lang, E.2
Brandt, U.3
Wu, Q.L.4
Scheuerl, T.5
-
14
-
-
76849114725
-
Polynucleobacter cosmopolitanus sp. nov., free-living planktonic bacteria inhabiting freshwater lakes and rivers
-
Hahn, M.W., Lang, E., Brandt, U., Lünsdorf, H., Wu, Q.L., and Stackebrandt, E. (2010) Polynucleobacter cosmopolitanus sp. nov., free-living planktonic bacteria inhabiting freshwater lakes and rivers. Int J Syst Evol Microbiol 60: 166-173.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 166-173
-
-
Hahn, M.W.1
Lang, E.2
Brandt, U.3
Lünsdorf, H.4
Wu, Q.L.5
Stackebrandt, E.6
-
15
-
-
0016610947
-
Omikron, ein essentieller endosymbiont von Euplotes aediculatus
-
Heckmann, K. (1975) Omikron, ein essentieller endosymbiont von Euplotes aediculatus. J Protozool 22: 97-104.
-
(1975)
J Protozool
, vol.22
, pp. 97-104
-
-
Heckmann, K.1
-
16
-
-
0000495106
-
Polynucleobacter necessarius gen. nov., spec. nov., an obligately endosymbiotic bacterium living in the cytoplasm of Euplotes aediculatus
-
Heckmann, K., and Schmidt, H.J. (1987) Polynucleobacter necessarius gen. nov., spec. nov., an obligately endosymbiotic bacterium living in the cytoplasm of Euplotes aediculatus. Int J Syst Bacteriol 37: 456-457.
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 456-457
-
-
Heckmann, K.1
Schmidt, H.J.2
-
17
-
-
84985059828
-
Fresh-water Euplotes species with a 9 type I cirrus pattern depend upon endosymbionts
-
Heckmann, K., ten Hagen, R., and Görtz, H.D. (1983) Fresh-water Euplotes species with a 9 type I cirrus pattern depend upon endosymbionts. J Protozool 30: 284-289.
-
(1983)
J Protozool
, vol.30
, pp. 284-289
-
-
Heckmann, K.1
ten Hagen, R.2
Görtz, H.D.3
-
19
-
-
33746357860
-
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package
-
Kumar, Y., Westram, R., Kipfer, P., Meier, H., and Ludwig, W. (2006) Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package. BMC Bioinformatics 7: 240.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 240
-
-
Kumar, Y.1
Westram, R.2
Kipfer, P.3
Meier, H.4
Ludwig, W.5
-
20
-
-
33846102841
-
probeBase - an online resource for rRNA-targeted oligonucleotide probes: new features 2007
-
Loy, A., Maixner, F., Wagner, M., and Horn, M. (2007) probeBase - an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Res 35: D800-D804.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Loy, A.1
Maixner, F.2
Wagner, M.3
Horn, M.4
-
21
-
-
0031895203
-
Bacterial phylogeny based on comparative sequence analysis
-
Ludwig, W., Strunk, O., Klugbauer, S., Klugbauer, N., Weizenegger, M., Neumaier, J., etal. (1998) Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19: 554-568.
-
(1998)
Electrophoresis
, vol.19
, pp. 554-568
-
-
Ludwig, W.1
Strunk, O.2
Klugbauer, S.3
Klugbauer, N.4
Weizenegger, M.5
Neumaier, J.6
-
22
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Kumar, Y., etal. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Kumar, Y.6
-
23
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions
-
Manz, W., Amann, R.I., Wagner, M., and Schleifer, K.H. (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst Appl Microbiol 15: 593-600.
-
(1992)
Syst Appl Microbiol
, vol.15
, pp. 593-600
-
-
Manz, W.1
Amann, R.I.2
Wagner, M.3
Schleifer, K.H.4
-
24
-
-
0024241467
-
The characterization of enzymatically amplified 16S-like rRNA coding regions
-
Medlin, L., Elwood, H.J., Stickel, S., and Sogin, M.L. (1988) The characterization of enzymatically amplified 16S-like rRNA coding regions. Gene 71: 491-499.
-
(1988)
Gene
, vol.71
, pp. 491-499
-
-
Medlin, L.1
Elwood, H.J.2
Stickel, S.3
Sogin, M.L.4
-
25
-
-
33845506649
-
Molecular systematics and ultrastructural characterization of a forgotten species: Chattonidium setense (Ciliophora, Heterotrichea)
-
Modeo, L., Rosati, G., Andreoli, I., Gabrielli, S., Verni, F., and Petroni, G. (2006) Molecular systematics and ultrastructural characterization of a forgotten species: Chattonidium setense (Ciliophora, Heterotrichea). Proc Jpn Acad Ser B Phys Biol Sci 82: 359-374.
-
(2006)
Proc Jpn Acad Ser B Phys Biol Sci
, vol.82
, pp. 359-374
-
-
Modeo, L.1
Rosati, G.2
Andreoli, I.3
Gabrielli, S.4
Verni, F.5
Petroni, G.6
-
26
-
-
59549107100
-
Bacterial succession within an ephemeral hypereutrophic Mojave Desert Playa Lake
-
Navarro, J.B., Moser, D.P., Flores, A., Ross, C., Rosen, M.R., Dong, H., etal. (2009) Bacterial succession within an ephemeral hypereutrophic Mojave Desert Playa Lake. Microb Ecol 57: 307-320.
-
(2009)
Microb Ecol
, vol.57
, pp. 307-320
-
-
Navarro, J.B.1
Moser, D.P.2
Flores, A.3
Ross, C.4
Rosen, M.R.5
Dong, H.6
-
27
-
-
0036362507
-
A molecular approach to the tangled intrageneric relationships underlying phylogeny in Euplotes (Ciliophora, Spirotrichea)
-
Petroni, G., Dini, F., Verni, F., and Rosati, G. (2002) A molecular approach to the tangled intrageneric relationships underlying phylogeny in Euplotes (Ciliophora, Spirotrichea). Mol Phylogenet Evol 22: 118-130.
-
(2002)
Mol Phylogenet Evol
, vol.22
, pp. 118-130
-
-
Petroni, G.1
Dini, F.2
Verni, F.3
Rosati, G.4
-
28
-
-
0038323856
-
In situ identification by fluorescently labeled oligonucleotide probes of morphologically similar, closely related ciliate species
-
Petroni, G., Rosati, G., Vannini, C., Modeo, L., Dini, F., and Verni, F. (2003) In situ identification by fluorescently labeled oligonucleotide probes of morphologically similar, closely related ciliate species. Microb Ecol 45: 156-162.
-
(2003)
Microb Ecol
, vol.45
, pp. 156-162
-
-
Petroni, G.1
Rosati, G.2
Vannini, C.3
Modeo, L.4
Dini, F.5
Verni, F.6
-
29
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W.G., Peplies, J., and Glockner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.G.5
Peplies, J.6
Glockner, F.O.7
-
30
-
-
0035174578
-
The species concept for prokaryotes
-
Rosselló-Mora, R., and Amann, R. (2001) The species concept for prokaryotes. FEMS Microbiol Rev 25: 39-67.
-
(2001)
FEMS Microbiol Rev
, vol.25
, pp. 39-67
-
-
Rosselló-Mora, R.1
Amann, R.2
-
31
-
-
0036205377
-
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt, H.A., Strimmer, K., Vingron, M., and von Haeseler, A. (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
-
32
-
-
34047215906
-
Morphology, ultrastructure, molecular phylogeny, and autecology of Euplotes elegans Kahl, 1932 (Hypotrichida; Euplotidae) isolated from the anoxic Mariager Fjord, Denmark
-
Schwarz, M.V.J., Zuendorf, A., and Stoeck, T. (2007) Morphology, ultrastructure, molecular phylogeny, and autecology of Euplotes elegans Kahl, 1932 (Hypotrichida; Euplotidae) isolated from the anoxic Mariager Fjord, Denmark. J Eukaryot Microbiol 54: 125-136.
-
(2007)
J Eukaryot Microbiol
, vol.54
, pp. 125-136
-
-
Schwarz, M.V.J.1
Zuendorf, A.2
Stoeck, T.3
-
33
-
-
0030061074
-
Polynucleobacter necessarius, an obligate bacterial endosymbiont of the hypotrichous ciliate Euplotes aediculatus, is a member of the β- subclass of Proteobacteria
-
Springer, N., Amann, R., Ludwig, W., Schleifer, K.H., and Schmidt, H. (1996) Polynucleobacter necessarius, an obligate bacterial endosymbiont of the hypotrichous ciliate Euplotes aediculatus, is a member of the β- subclass of Proteobacteria. FEMS Microbiol Lett 135: 333-336.
-
(1996)
FEMS Microbiol Lett
, vol.135
, pp. 333-336
-
-
Springer, N.1
Amann, R.2
Ludwig, W.3
Schleifer, K.H.4
Schmidt, H.5
-
34
-
-
41049100468
-
Pheromone evolution in the protozoan ciliate Euplotes: the ability to synthesize diffusible forms is ancestral and secondarily lost
-
Vallesi, A., Di Giuseppe, G., Dini, F., and Luporini, P. (2008) Pheromone evolution in the protozoan ciliate Euplotes: the ability to synthesize diffusible forms is ancestral and secondarily lost. Mol Phylogenet Evol 47: 439-442.
-
(2008)
Mol Phylogenet Evol
, vol.47
, pp. 439-442
-
-
Vallesi, A.1
Di Giuseppe, G.2
Dini, F.3
Luporini, P.4
-
35
-
-
4243201449
-
Euplotes magnicirratus (Ciliophora, Hypotrichia) depends on its bacterial endosymbiont 'Candidatus Devosia euplotis' for food digestion
-
Vannini, C., Schena, A., Verni, F., and Rosati, G. (2004) Euplotes magnicirratus (Ciliophora, Hypotrichia) depends on its bacterial endosymbiont 'Candidatus Devosia euplotis' for food digestion. Aquat Microb Ecol 36: 19-28.
-
(2004)
Aquat Microb Ecol
, vol.36
, pp. 19-28
-
-
Vannini, C.1
Schena, A.2
Verni, F.3
Rosati, G.4
-
36
-
-
21844447878
-
Polynucleobacter bacteria in the brackish-water species Euplotes harpa (Ciliata, Hypotrichia)
-
Vannini, C., Petroni, G., Verni, F., and Rosati, G. (2005) Polynucleobacter bacteria in the brackish-water species Euplotes harpa (Ciliata, Hypotrichia). J Eukaryot Microbiol 52: 116-122.
-
(2005)
J Eukaryot Microbiol
, vol.52
, pp. 116-122
-
-
Vannini, C.1
Petroni, G.2
Verni, F.3
Rosati, G.4
-
37
-
-
33846127088
-
Endosymbiosis in statu nascendi: close phylogenetic relationship between obligately endosymbiotic and obligately free-living Polynucleobacter strains (Betaproteobacteria)
-
Vannini, C., Pöckl, M., Petroni, G., Wu, Q.L., Lang, E., Stackebrandt, E., etal. (2007a) Endosymbiosis in statu nascendi: close phylogenetic relationship between obligately endosymbiotic and obligately free-living Polynucleobacter strains (Betaproteobacteria). Environ Microbiol 9: 347-359.
-
(2007)
Environ Microbiol
, vol.9
, pp. 347-359
-
-
Vannini, C.1
Pöckl, M.2
Petroni, G.3
Wu, Q.L.4
Lang, E.5
Stackebrandt, E.6
-
38
-
-
34347336277
-
Polynucleobacter: symbiotic bacteria in ciliates compensate for a genetic disorder in glycogenolisis
-
Vannini, C., Lucchesi, S., and Rosati, G. (2007b) Polynucleobacter: symbiotic bacteria in ciliates compensate for a genetic disorder in glycogenolisis. Symbiosis 44: 85-91.
-
(2007)
Symbiosis
, vol.44
, pp. 85-91
-
-
Vannini, C.1
Lucchesi, S.2
Rosati, G.3
-
39
-
-
77953641399
-
'Candidatus Anadelfobacter veles' and 'Candidatus Cyrtobacter comes', two new Rickettsiales species hosted by the protist ciliate Euplotes harpa (Ciliophora, Spirotrichea)
-
Vannini, C., Ferrantini, F., Schleifer, K.H., Ludwig, W., Verni, F., and Petroni, G. (2010) 'Candidatus Anadelfobacter veles' and 'Candidatus Cyrtobacter comes', two new Rickettsiales species hosted by the protist ciliate Euplotes harpa (Ciliophora, Spirotrichea). Appl Environ Microbiol 76: 4047-4054.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4047-4054
-
-
Vannini, C.1
Ferrantini, F.2
Schleifer, K.H.3
Ludwig, W.4
Verni, F.5
Petroni, G.6
-
40
-
-
0025134521
-
PCR amplification of 16S rDNA from lyophilized cell cultures facilitates studies in molecular systematics
-
Wisotzkey, J.D., Jurtshuk, P., and Fox, G.E. (1990) PCR amplification of 16S rDNA from lyophilized cell cultures facilitates studies in molecular systematics. Curr Microbiol 21: 325-327.
-
(1990)
Curr Microbiol
, vol.21
, pp. 325-327
-
-
Wisotzkey, J.D.1
Jurtshuk, P.2
Fox, G.E.3
-
41
-
-
68149132427
-
Persistent Wolbachia and cultivable bacteria infection in the reproductive and somatic tissues of the mosquito vector Aedes albopictus
-
Zouache, K., Voronin, D., Tran-Van, V., Mousson, L., Failloux, A.B., and Mavingui, P. (2009) Persistent Wolbachia and cultivable bacteria infection in the reproductive and somatic tissues of the mosquito vector Aedes albopictus. PLoS ONE 4: e6388.
-
(2009)
PLoS ONE
, vol.4
-
-
Zouache, K.1
Voronin, D.2
Tran-Van, V.3
Mousson, L.4
Failloux, A.B.5
Mavingui, P.6
-
42
-
-
0037178021
-
Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
-
Zwart, G., Crump, B.C., Kamst-van Agterveld, M.P., Hagen, F., and Han, S.K. (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28: 141-155.
-
(2002)
Aquat Microb Ecol
, vol.28
, pp. 141-155
-
-
Zwart, G.1
Crump, B.C.2
Kamst Van Agterveld, M.P.3
Hagen, F.4
Han, S.K.5
|