메뉴 건너뛰기




Volumn 11, Issue 9, 2012, Pages 814-823

Peptide production and decay rates affect the quantitative accuracy of protein cleavage isotope dilution mass spectrometry (PC-IDMS)

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE; STABLE ISOTOPE;

EID: 84865791474     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.O112.017145     Document Type: Article
Times cited : (65)

References (26)
  • 1
    • 0026133790 scopus 로고
    • Mass Spectrometric Quantification of Endogenous beta-Endorphin
    • Dass, C., Kusmierz, J. J., and Desiderio, D. M. (1991) Mass Spectrometric Quantification of Endogenous beta-Endorphin. Biol. Mass Spectrom. 20, 130-138
    • (1991) Biol. Mass Spectrom. , vol.20 , pp. 130-138
    • Dass, C.1    Kusmierz, J.J.2    Desiderio, D.M.3
  • 3
    • 0346668199 scopus 로고    scopus 로고
    • Absolute quantification of the g protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards
    • Barnidge, D. R., Dratz, E. A., Martin, T., Bonilla, L. E., Moran, L. B., and Lindall, A. (2003) Absolute quantification of the g protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards. Anal. Chem. 75, 445-451
    • (2003) Anal. Chem. , vol.75 , pp. 445-451
    • Barnidge, D.R.1    Dratz, E.A.2    Martin, T.3    Bonilla, L.E.4    Moran, L.B.5    Lindall, A.6
  • 4
    • 0037795741 scopus 로고    scopus 로고
    • Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. P
    • Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., and Gygi, S. P. (2003) Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. P. Natl. Acad. Sci. U.S.A. 100, 6940-6945
    • (2003) Natl. Acad. Sci. U.S.A. , vol.100 , pp. 6940-6945
    • Gerber, S.A.1    Rush, J.2    Stemman, O.3    Kirschner, M.W.4    Gygi, S.P.5
  • 5
    • 1842528125 scopus 로고    scopus 로고
    • Quantification of C-Reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and C-13-labeled peptide standards
    • Kuhn, E., Wu, J., Karl, J., Liao, H., Zolg, W., and Guild, B. (2004) Quantification of C-Reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and C-13-labeled peptide standards. Proteomics 4, 1175-1186
    • (2004) Proteomics , vol.4 , pp. 1175-1186
    • Kuhn, E.1    Wu, J.2    Karl, J.3    Liao, H.4    Zolg, W.5    Guild, B.6
  • 6
    • 8844233567 scopus 로고    scopus 로고
    • Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA)
    • Anderson, N. L., Anderson, N. G., Haines, L. R., Hardie, D. B., Olafson, R. W., and Pearson, T. W. (2004) Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA). J. Proteome Res. 3, 235-244
    • (2004) J. Proteome Res. , vol.3 , pp. 235-244
    • Anderson, N.L.1    Anderson, N.G.2    Haines, L.R.3    Hardie, D.B.4    Olafson, R.W.5    Pearson, T.W.6
  • 7
    • 4444301306 scopus 로고    scopus 로고
    • Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-MS/MS using protein cleavage and isotope dilution mass spectrometry
    • Barnidge, D. R., Goodmanson, M. K., Klee, G. G., and Muddiman, D. C. (2004) Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-MS/MS using protein cleavage and isotope dilution mass spectrometry. J. Proteome Res. 3, 644-652
    • (2004) J. Proteome Res. , vol.3 , pp. 644-652
    • Barnidge, D.R.1    Goodmanson, M.K.2    Klee, G.G.3    Muddiman, D.C.4
  • 8
    • 61849133375 scopus 로고    scopus 로고
    • Absolute quantification of C-reactive protein in human plasma derived from patients with epithelial ovarian cancer utilizing protein cleavage isotope dilution mass spectrometry
    • Williams, D. K., and Muddiman, D. C. (2009) Absolute quantification of C-reactive protein in human plasma derived from patients with epithelial ovarian cancer utilizing protein cleavage isotope dilution mass spectrometry. J. Proteome Res. 8, 1085-1090
    • (2009) J. Proteome Res. , vol.8 , pp. 1085-1090
    • Williams, D.K.1    Muddiman, D.C.2
  • 9
    • 23144442824 scopus 로고    scopus 로고
    • Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides
    • Beynon, R. J., Doherty, M. K., Pratt, J. M., and Gaskell, S. J. (2005) Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides. Nat. Methods 2, 587-589
    • (2005) Nat. Methods , vol.2 , pp. 587-589
    • Beynon, R.J.1    Doherty, M.K.2    Pratt, J.M.3    Gaskell, S.J.4
  • 10
    • 33847179916 scopus 로고    scopus 로고
    • Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
    • Pratt, J. M., Simpson, D. M., Doherty, M. K., Rivers, J., Gaskell, S. J., and Beynon, R. J. (2006) Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes. Nat. Protoc. 1, 1029-1043
    • (2006) Nat. Protoc. , vol.1 , pp. 1029-1043
    • Pratt, J.M.1    Simpson, D.M.2    Doherty, M.K.3    Rivers, J.4    Gaskell, S.J.5    Beynon, R.J.6
  • 12
    • 54049090766 scopus 로고    scopus 로고
    • Selected reaction monitoring for quantitative proteomics: A tutorial
    • Lange, V., Picotti, P., Domon, B., and Aebersold, R. (2008) Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol. 4, 14
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 14
    • Lange, V.1    Picotti, P.2    Domon, B.3    Aebersold, R.4
  • 13
    • 79551662220 scopus 로고    scopus 로고
    • Absolute quantification of protein and post-translational modification abundance with stable isotope-labeled synthetic peptides
    • Kettenbach, A. N., Rush, J., and Gerber, S. A. (2011) absolute quantification of protein and post-translational modification abundance with stable isotope-labeled synthetic peptides. Nat. Protoc. 6, 175-186
    • (2011) Nat. Protoc. , vol.6 , pp. 175-186
    • Kettenbach, A.N.1    Rush, J.2    Gerber, S.A.3
  • 14
    • 45749100868 scopus 로고    scopus 로고
    • Mass spectrometry-based approaches toward absolute quantitative proteomics
    • Kito, K., and Ito, T. (2008) Mass spectrometry-based approaches toward absolute quantitative proteomics. Curr. Genomics 9, 263-274
    • (2008) Curr. Genomics , vol.9 , pp. 263-274
    • Kito, K.1    Ito, T.2
  • 15
    • 44949092745 scopus 로고    scopus 로고
    • Protein quantification by isotope dilution mass spectrometry of proteolytic fragments: Cleavage rate and accuracy
    • Arsene, C. G., Ohlendorf, R., Burkitt, W., Pritchard, C., Henrion, A., O'Connor, G., Bunk, D. M., and Güttler, B. (2008) Protein quantification by isotope dilution mass spectrometry of proteolytic fragments: cleavage rate and accuracy. Anal. Chem. 80, 4154-4160
    • (2008) Anal. Chem. , vol.80 , pp. 4154-4160
    • Arsene, C.G.1    Ohlendorf, R.2    Burkitt, W.3    Pritchard, C.4    Henrion, A.5    O'Connor, G.6    Bunk, D.M.7    Güttler, B.8
  • 16
    • 67649511917 scopus 로고    scopus 로고
    • Isotope dilution strategies for absolute quantitative proteomics
    • Brun, V., Masselon, C., Garin, J., and Dupuis, A. (2009) Isotope dilution strategies for absolute quantitative proteomics. J. Proteomics 72, 740-749
    • (2009) J. Proteomics , vol.72 , pp. 740-749
    • Brun, V.1    Masselon, C.2    Garin, J.3    Dupuis, A.4
  • 18
    • 74549176584 scopus 로고    scopus 로고
    • Towards a systems approach for lignin biosynthesis in Populus trichocarpa: Transcript abundance and specificity of the monolignol biosynthetic genes
    • Shi, R., Sun, Y. H., Li, Q., Heber, S., Sederoff, R., and Chiang, V. L. (2010) Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes. Plant Cell Physiol. 51, 144-163
    • (2010) Plant Cell Physiol. , vol.51 , pp. 144-163
    • Shi, R.1    Sun, Y.H.2    Li, Q.3    Heber, S.4    Sederoff, R.5    Chiang, V.L.6
  • 19
    • 84862908469 scopus 로고    scopus 로고
    • Membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis
    • Chen, H. C., Li, Q., Shuford, C. M., Liu, J., Muddiman, D. C., Sederoff, R. R., and Chiang, V. L. (2011) membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis. Proc. Natl. Acad. Sci. U.S.A. 108, 21253-21258
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 21253-21258
    • Chen, H.C.1    Li, Q.2    Shuford, C.M.3    Liu, J.4    Muddiman, D.C.5    Sederoff, R.R.6    Chiang, V.L.7
  • 20
    • 0016160429 scopus 로고
    • Measurement of protein by spectrophotometry at 205-nm
    • Scopes, R. K. (1974) Measurement of protein by spectrophotometry at 205-nm. Anal. Biochem. 59, 277-282
    • (1974) Anal. Biochem. , vol.59 , pp. 277-282
    • Scopes, R.K.1
  • 21
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wiśniewski, J. R., Zougman, A., Nagaraj, N., and Mann, M. (2009) Universal sample preparation method for proteome analysis. Nat. Methods 6, 359-362
    • (2009) Nat. Methods , vol.6 , pp. 359-362
    • Wiśniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 24
    • 79961202534 scopus 로고    scopus 로고
    • The importance of the digest: Proteolysis and absolute quantification in proteomics
    • Brownridge, P., and Beynon, R. J. (2011) The importance of the digest: Proteolysis and absolute quantification in proteomics. Methods 54, 351-360
    • (2011) Methods , vol.54 , pp. 351-360
    • Brownridge, P.1    Beynon, R.J.2
  • 25
    • 0013784519 scopus 로고
    • Reactions of cyanate with functional groups of proteins. 3. Reactions with amino and carboxyl groups
    • Stark, G. R. (1965) Reactions of cyanate with functional groups of proteins. 3. Reactions with amino and carboxyl groups. Biochemistry 4, 1030-1036
    • (1965) Biochemistry , vol.4 , pp. 1030-1036
    • Stark, G.R.1
  • 26
    • 4444334030 scopus 로고    scopus 로고
    • Evaluation of a cleavable stable isotope labeled synthetic peptide for absolute protein quantification using LC-MS/MS
    • Barnidge, D. R., Hall, G. D., Stocker, J. L., and Muddiman, D. C. (2004) Evaluation of a cleavable stable isotope labeled synthetic peptide for absolute protein quantification using LC-MS/MS. J. Proteome Res. 3, 658-661
    • (2004) J. Proteome Res. , vol.3 , pp. 658-661
    • Barnidge, D.R.1    Hall, G.D.2    Stocker, J.L.3    Muddiman, D.C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.