Comparative cytogenetic mapping between the lima bean (Phaseolus lunatus L.) and the common bean (P. vulgaris L.)

Theoretical and Applied Genetics

Volumn 124, Issue 8, 2012, Pages 1513-1520

  Bonifácio, Eliene Mariano ^a   Fonsêca, Artur ^a   Almeida, Cícero ^a,b   dos Santos, Karla G B ^a   Pedrosa Harand, Andrea ^a  

^a FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

^b FEDERAL UNIVERSITY OF ALAGOAS   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

CONSERVATION; FACSIMILE;

COMMON BEAN (PHASEOLUS VULGARIS); COMMON BEANS; FLUOROCHROMES; HUMAN CONSUMPTION; PHASEOLUS LUNATUS; REPETITIVE PATTERN; RIBOSOMAL DNA (RDNA); STRUCTURAL REARRANGEMENT;

CHROMOSOMES;

PHASEOLUS LUNATUS; PHASEOLUS VULGARIS;

4',6 DIAMIDINO 2 PHENYLINDOLE; CHROMOMYCIN A3; INDOLE DERIVATIVE; RIBOSOME DNA;

ARTICLE; BIOLOGICAL MODEL; CENTROMERE; CHEMISTRY; CHROMOSOME; CHROMOSOME MAP; CYTOGENETICS; FABACEAE; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; HETEROCHROMATIN; KARYOTYPING; METABOLISM; METHODOLOGY; PHASEOLUS; PLANT GENE; TELOMERE; ULTRASTRUCTURE;

CENTROMERE; CHROMOMYCIN A3; CHROMOSOME MAPPING; CHROMOSOMES; CYTOGENETICS; DNA, RIBOSOMAL; FABACEAE; GENES, PLANT; HETEROCHROMATIN; IN SITU HYBRIDIZATION, FLUORESCENCE; INDOLES; KARYOTYPING; MODELS, GENETIC; PHASEOLUS; TELOMERE;

EID: 84865699805     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-012-1806-x     Document Type: Article

References (48)

1. Adam-Blondon A, Sévignac M, Dron M, Bannerot H (1994) A genetic map of common bean to localize specific resistance genes against anthracnose. Genome 37: 915-924.
2. Almeida C, Pedrosa-Harand A (2010) Contrasting rDNA evolution in lima bean (Phaseolus lunatus L.) and common bean (P. vulgaris L., Fabaceae). Cytogenet Genome Res 132: 212-217.
3. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9: 208-218.
4. Broughton WJ, Hernández G, Blair M, Beebe S, Gepts P, Vanderleyden J (2003) Beans (Phaseolus spp.): model food legumes. Plant Soil 252: 55-128.
5. Cabral JS, Felix LP, Guerra M (2006) Heterochromatin diversity and its co-localization with 5S and 45S rDNA sites in chromosomes of four Maxillaria species (Orchidaceae). Genet Mol Biol 29: 659-664.
6. Carvalho R, Filho WSS, Brasileiro-Vidal AC, Guerra M (2005) The relationship among lemons, limes and citron: a chromosomal comparison. Cytogenetic Genome Res 109: 276-282.
7. Chacón SMI, Pickersgill B, Debouck DG (2005) Domestication patterns in common bean (Phaseolus vulgaris L.) and the origin of the Mesoamerican and Andean cultivated races. Theor Appl Genet 110: 432-444.
8. David P, Chen NWG, Pedrosa-Harand A et al (2009) A nomadic subtelomeric disease resistance gene cluster in common bean. Plant Physiol 151: 1048-1065.
9. Deumling B, Greilhuber J (1982) Characterization of heterochromatin in different species of the Scilla siberica group (Liliaceae) by in situ hybridization of satellite DNAs and fluorochrome banding. Chromosoma 84: 535-555.
10. Doganlar S, Frary A, Daunay M-C, Lester RN, Tanksley SD (2002) A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the Solanaceae. Genetics 161: 1697-1711.
11. Dubcovsky J, Dvorak J (1995) Ribossomal RNA multigene loci: nomads of the Triticeae genomes. Genetics 140: 1367-1377.
12. Ferrier-Cana E, Geffroy V, Macadré C et al (2003) Characterization of expressed NBS-LRR resistance gene candidates from common bean. Theor Appl Genet 106: 251-261.
13. Fonsêca A, Ferreira J, Santos TRB et al (2010) Cytogenetic map of common bean (Phaseolus vulgaris L.). Chromosome Res 8: 487-502.
14. Freyre R, Skroch PW, Geffroy V et al (1998) Towards an integrated linkage map of common bean 4: development of a core linkage map and alignment of RFLP maps. Theor Appl Genet 97: 847-856.
15. Geffroy V, Sévignac M, Billiant P, Dron M, Langin T (2008) Resistance to Colletotrichum lindemuthianum in Phaseolus vulgaris: a case study for mapping two independent genes. Theor Appl Genet 116: 407-415.
16. Geffroy V, Macadré C, David P et al (2009) Molecular analysis of a large subtelomeric NBS-LRR family in two representative genotypes of the major gene pools of Phaseolus vulgaris. Genetics 181: 405-419.
17. Han Y, Zhang Z, Liu C et al (2009) Centromere repositioning in cucurbit species: implication of the genomic impact from centromere activation and inactivation. Proc Natl Acad Sci USA 106: 14937-14941.
18. Heslop-Harrison JS, Harrison GE, Leitch IJ (1992) Reprobing of DNA: DNA in situ hybridization preparations. Trends Genet 8: 372-373.
19. Hizume M, Ohgiku A, Tanaka A (1989) Chromosome banding in the genus Pinus II. Interespecific variation on fluorescent banding patterns in P. densiflora e P. thunbergii. Bot Mag 102: 25-36.
20. Iovene M, Wielgus SM, Simom PH, Buell CR, Jiang J (2008) Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics 180: 1307-1317.
21. Iovene M, Cavagnaro PF, Senalik D, Buell CR, Jiang J, Simon PW (2011) Comparative FISH mapping of Daucus species (Apiaceae family). Chromosome Res 19: 493-506.
22. Kami J, Poncet V, Geffroy V, Gepts P (2006) Development of four phylogenetically-arrayed BAC libraries and sequence of the APA locus in Phaseolus vulgaris. Theor Appl Genet 112: 987-998.
23. Koumbaris GL, Bass HW (2003) A new single-locus cytogenetic mapping system for maize (Zea mays L.): overcoming FISH detection limits with marker-selected sorghum (S. propiquum L.) BAC clones. Plant J 35: 647-659.
24. Lysak MA, Berr A, Pecinka A, Schmidt R, McBreen K, Schubert I (2006) Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species. Proc Natl Acad Sci USA 103: 5224-5229.
25. Ma L, Vu GTH, Schubert V et al (2010) Synteny between Brachypodium distachyon and Hordeum vulgare as revealed by FISH. Chromosome Res 18: 841-850.
26. Mandáková T, Lysak MA (2008) Chromosomal phylogeny and karyotype evolution in x = 7 crucifer species (Brassicaceae). Plant Cell 20: 2559-2570.
27. Men AE, Meksem K, Kassem MA et al (2001) A bacterial chromosome library of Lotus japonicus constructed in an Agrobacterium tumefaciens-transformable vector. MPMI 14: 422-425.
28. Mercado-Ruaro P, Delgado-Salinas A (1996) Karyological studies in several Mexican species of Phaseolus L. and Vigna savi (Phaseolinae, Fabaceae). In: Pickergill B, Lock JM (eds) Advances in legumes systematics 8: legumes of economic importance. Royal Botanic Gardens, Kew, pp 83-87.
29. Mercado-Ruaro P, Delgado-Salinas A (1998) Karyotypic studies on species of Phaseolus (Fabaceae: Phaseolinae). Am J Bot 85: 1-9.
30. Moscone EA, Klein F, Lambrou M, Fuchs J, Schweizer D (1999) Quantitative karyotyping and dual-color FISH mapping of 5S and 18S-25S rDNA probes in the cultivated Phaseolus species (Leguminosae). Genome 42: 1224-1233.
31. Nodari RO, Tsai SM, Gilbertson RL, Gepts P (1993) Towards an integrated linkage map of common bean: II development of an RFLP-based linkage map. Theor Appl Genet 85: 513-520.
32. Oliveira AP, Alves EU, Alves AU et al (2004) Produção de feijão-fava em função do uso de doses de fósforo em um Neossolo Regolítico. Hortic Bras 22: 543-546.
33. Pedrosa A, Sandal N, Stougaard J, Schweizer D, Bachmair A (2002) Chromosomal map of the model legume Lotus japonicus. Genetics 161: 1661-1672.
34. Pedrosa A, Vallejos CE, Bachmair A, Schweizer D (2003) Integration of common bean (Phaseolus vulgaris L.) linkage and chromosomal maps. Theor Appl Genet 106: 205-212.
35. Pedrosa-Harand A, Porch T, Gepts P (2008) Standard nomenclature for common bean chromosomes and linkage groups. Annu Rep Bean Improv Coop 51: 106-107.
36. Pedrosa-Harand A, Kami J, Gepts P, Geffroy V, Schweizer D (2009) Cytogenetic mapping of common bean chromosomes reveals a less compartmentalised small-genome plant species. Chromosome Res 17: 405-417.
37. Raskina O, Belyayev A, Nevo E (2004) Quantum speciation in Aegilops: molecular cytogenetic evidence from rDNA cluster variability in natural populations. Proc Natl Acad Sci USA 101: 14818-14823.
38. Schubert I, Lysak MA (2011) Interpretation of karyotype evolution should consider chromosome structural constraints. Trends Genet 27: 207-2016.
39. Serrano-Serrano ML, Hernández-Torres J, Castillo-Villamizar G, Debouck DG, Sánchez MI (2010) Gene pools in wild Lima bean (Phaseolus lunatus L.) from the Americas: evidences for an Andean origin and past migrations. Mol Phylogenet Evol 54: 76-87.
40. Silva SC, Martins MIG, Santos RC et al (2010) Karyological features and banding patterns in Arachis species belonging to the Heteranthae section. Plant Syst Evol 285: 201-207.
41. Souza MGC, Benko-Iseppon AM (2004) Cytogenetics and chromosome banding patterns in Caesalpinioideae and Papilionioideae species of Pará, Amazonas, Brazil. Bot J Linn Soc 144: 181-191.
42. Tang X, Szinay D, Lang C et al (2008) Cross-species bacterial artificial chromosome-fluorescence in situ hybridization painting of the tomato and potato chromosome 6 reveals undescribed chromosomal rearrangements. Genetics 180: 1319-1328.
43. Topp CN, Okagaki RJ, Melo JR, Kynast RG, Phillips RL, Dawe RK (2009) Identification of a maize neocentromere in an oat-maize addition line. Cytogenet Genome Res 124: 228-238.
44. Vallejos CE, Sakiyama NS, Chase CD (1992) A molecular marker-based linkage map of Phaseolus vulgaris L. Genetics 131: 733-740.
45. Wanzenböck E-M, Schöfer C, Schweizer D, Bachmair A (1997) Ribosomal transcription units integrated via T-DNA transformation associate with the nucleolus and do not require upstream repeat sequences for activity in Arabidopsis thaliana. Plant J 11: 1007-1016.
46. Wu C-C, Nimmakayala P, Santos FA et al (2004) Construction and characterization of a soybean bacterial artificial chromosome library and use of multiple complementary libraries for genome physical mapping. Theor Appl Genet 109: 1041-1050.
47. Yang J, Wang Q, Deng D et al (2003) Construction and characterization of a bacterial artificial chromosome library of maize inbred line 77Ht2. Plant Mol Biol Rep 21: 159-169.
48. Zheng J, Nakata M, Uchiyama H, Morikawa H, Tanaka R (1991) Giemsa C-banding patterns in several species of Phaseolus L. and Vigna savi, Fabaceae. Cytologia 56: 459-466.